EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000006556 (Gene tree)
Gene ID: -
Gene Symbol: LSM7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 5417 bases
Position: chrKK499449.1:1502268-1507684
Accession: 103681650
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000008588	LSM	PF01423.22	6.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000010256	LSM7-201	523	XM_008711215	ENSUMAP00000008588	128 (aa)	XP_008709437	UPI0004E004BA

Gene Model

Click here to download ENSUMAG00000006556's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000006556's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000006556	LSM7	55	35.714	ENSUMAG00000016465	-	85	35.714
ENSUMAG00000006556	LSM7	55	40.845	ENSUMAG00000021476	-	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000006556	LSM7	79	99.010	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSUMAG00000006556	LSM7	74	93.684	ENSAPOG00000015573	lsm7	82	93.684	Acanthochromis_polyacanthus
ENSUMAG00000006556	LSM7	80	99.020	ENSAMEG00000005484	LSM7	99	99.020	Ailuropoda_melanoleuca
ENSUMAG00000006556	LSM7	76	93.814	ENSACIG00000006498	lsm7	71	94.382	Amphilophus_citrinellus
ENSUMAG00000006556	LSM7	79	95.050	ENSAOCG00000001077	lsm7	93	94.118	Amphiprion_ocellaris
ENSUMAG00000006556	LSM7	79	95.050	ENSAPEG00000024447	lsm7	93	94.118	Amphiprion_percula
ENSUMAG00000006556	LSM7	78	95.000	ENSAPEG00000000694	lsm7	98	94.059	Amphiprion_percula
ENSUMAG00000006556	LSM7	78	95.000	ENSATEG00000008557	lsm7	98	94.059	Anabas_testudineus
ENSUMAG00000006556	LSM7	79	91.089	ENSANAG00000022222	-	98	91.089	Aotus_nancymaae
ENSUMAG00000006556	LSM7	79	99.010	ENSANAG00000037196	-	98	99.010	Aotus_nancymaae
ENSUMAG00000006556	LSM7	78	94.000	ENSACLG00000021021	lsm7	90	93.548	Astatotilapia_calliptera
ENSUMAG00000006556	LSM7	78	95.000	ENSAMXG00000037622	lsm7	98	94.059	Astyanax_mexicanus
ENSUMAG00000006556	LSM7	79	99.010	ENSBTAG00000004521	LSM7	98	99.010	Bos_taurus
ENSUMAG00000006556	LSM7	80	55.882	WBGene00003081	lsm-7	88	56.522	Caenorhabditis_elegans
ENSUMAG00000006556	LSM7	80	99.020	ENSCAFG00000019409	LSM7	99	99.020	Canis_familiaris
ENSUMAG00000006556	LSM7	81	98.077	ENSCAFG00020018168	LSM7	74	100.000	Canis_lupus_dingo
ENSUMAG00000006556	LSM7	80	98.039	ENSCHIG00000023663	LSM7	99	98.039	Capra_hircus
ENSUMAG00000006556	LSM7	55	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSUMAG00000006556	LSM7	79	99.010	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSUMAG00000006556	LSM7	79	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSUMAG00000006556	LSM7	79	99.010	ENSCATG00000023543	LSM7	98	99.010	Cercocebus_atys
ENSUMAG00000006556	LSM7	79	99.010	ENSCLAG00000011635	LSM7	98	99.010	Chinchilla_lanigera
ENSUMAG00000006556	LSM7	79	99.010	ENSCSAG00000011599	LSM7	98	99.010	Chlorocebus_sabaeus
ENSUMAG00000006556	LSM7	55	94.366	ENSCPBG00000021317	LSM7	76	94.366	Chrysemys_picta_bellii
ENSUMAG00000006556	LSM7	75	80.208	ENSCING00000022134	-	91	81.111	Ciona_intestinalis
ENSUMAG00000006556	LSM7	79	99.010	ENSCANG00000035525	LSM7	98	99.010	Colobus_angolensis_palliatus
ENSUMAG00000006556	LSM7	79	98.020	ENSCGRG00001000807	-	98	98.020	Cricetulus_griseus_chok1gshd
ENSUMAG00000006556	LSM7	70	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSUMAG00000006556	LSM7	80	97.059	ENSCGRG00000014355	-	99	96.117	Cricetulus_griseus_crigri
ENSUMAG00000006556	LSM7	70	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSUMAG00000006556	LSM7	85	90.826	ENSCSEG00000014900	lsm7	93	90.000	Cynoglossus_semilaevis
ENSUMAG00000006556	LSM7	81	93.269	ENSCVAG00000021091	lsm7	97	92.381	Cyprinodon_variegatus
ENSUMAG00000006556	LSM7	78	95.000	ENSDARG00000058328	lsm7	90	94.624	Danio_rerio
ENSUMAG00000006556	LSM7	79	99.010	ENSDORG00000024460	Lsm7	99	99.010	Dipodomys_ordii
ENSUMAG00000006556	LSM7	80	74.757	FBgn0261068	LSm7	83	78.022	Drosophila_melanogaster
ENSUMAG00000006556	LSM7	80	95.098	ENSETEG00000012788	LSM7	100	95.098	Echinops_telfairi
ENSUMAG00000006556	LSM7	65	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSUMAG00000006556	LSM7	79	84.158	ENSEBUG00000016992	lsm7	98	83.333	Eptatretus_burgeri
ENSUMAG00000006556	LSM7	82	92.381	ENSECAG00000001440	LSM7	71	90.090	Equus_caballus
ENSUMAG00000006556	LSM7	79	100.000	ENSFCAG00000003445	LSM7	98	100.000	Felis_catus
ENSUMAG00000006556	LSM7	78	97.000	ENSFALG00000011912	LSM7	99	97.000	Ficedula_albicollis
ENSUMAG00000006556	LSM7	75	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSUMAG00000006556	LSM7	71	95.604	ENSFHEG00000006349	lsm7	94	92.381	Fundulus_heteroclitus
ENSUMAG00000006556	LSM7	79	92.079	ENSGMOG00000013320	lsm7	99	91.176	Gadus_morhua
ENSUMAG00000006556	LSM7	78	96.000	ENSGAFG00000013902	lsm7	98	95.050	Gambusia_affinis
ENSUMAG00000006556	LSM7	79	93.069	ENSGACG00000010390	lsm7	99	92.157	Gasterosteus_aculeatus
ENSUMAG00000006556	LSM7	79	99.010	ENSGGOG00000010172	LSM7	98	99.010	Gorilla_gorilla
ENSUMAG00000006556	LSM7	80	92.157	ENSHBUG00000004616	lsm7	90	93.548	Haplochromis_burtoni
ENSUMAG00000006556	LSM7	79	99.010	ENSHGLG00000010587	LSM7	98	99.010	Heterocephalus_glaber_female
ENSUMAG00000006556	LSM7	79	99.010	ENSHGLG00100000852	LSM7	98	99.010	Heterocephalus_glaber_male
ENSUMAG00000006556	LSM7	78	94.000	ENSHCOG00000020252	lsm7	92	93.548	Hippocampus_comes
ENSUMAG00000006556	LSM7	78	95.000	ENSIPUG00000024724	lsm7	98	94.059	Ictalurus_punctatus
ENSUMAG00000006556	LSM7	80	98.039	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSUMAG00000006556	LSM7	79	97.030	ENSJJAG00000001936	Lsm7	98	97.030	Jaculus_jaculus
ENSUMAG00000006556	LSM7	78	96.000	ENSKMAG00000022151	lsm7	98	95.050	Kryptolebias_marmoratus
ENSUMAG00000006556	LSM7	78	95.000	ENSLBEG00000005203	lsm7	98	94.059	Labrus_bergylta
ENSUMAG00000006556	LSM7	79	98.020	ENSLACG00000015700	LSM7	98	98.020	Latimeria_chalumnae
ENSUMAG00000006556	LSM7	79	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSUMAG00000006556	LSM7	80	97.087	ENSLAFG00000029302	LSM7	100	97.087	Loxodonta_africana
ENSUMAG00000006556	LSM7	79	99.010	ENSMFAG00000044572	LSM7	98	99.010	Macaca_fascicularis
ENSUMAG00000006556	LSM7	79	99.010	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSUMAG00000006556	LSM7	79	99.010	ENSMNEG00000004393	LSM7	98	99.010	Macaca_nemestrina
ENSUMAG00000006556	LSM7	79	99.010	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSUMAG00000006556	LSM7	78	94.000	ENSMAMG00000005410	lsm7	90	93.548	Mastacembelus_armatus
ENSUMAG00000006556	LSM7	78	94.000	ENSMZEG00005028055	lsm7	90	93.548	Maylandia_zebra
ENSUMAG00000006556	LSM7	78	98.000	ENSMGAG00000000750	LSM7	92	93.458	Meleagris_gallopavo
ENSUMAG00000006556	LSM7	80	97.059	ENSMAUG00000009276	Lsm7	99	97.059	Mesocricetus_auratus
ENSUMAG00000006556	LSM7	79	99.010	ENSMICG00000028619	-	98	99.010	Microcebus_murinus
ENSUMAG00000006556	LSM7	79	99.010	ENSMICG00000009988	-	98	99.010	Microcebus_murinus
ENSUMAG00000006556	LSM7	79	98.020	ENSMOCG00000016925	Lsm7	98	98.020	Microtus_ochrogaster
ENSUMAG00000006556	LSM7	78	95.000	ENSMMOG00000019645	lsm7	96	94.059	Mola_mola
ENSUMAG00000006556	LSM7	78	99.000	ENSMODG00000004722	LSM7	97	99.000	Monodelphis_domestica
ENSUMAG00000006556	LSM7	78	94.000	ENSMALG00000014511	lsm7	72	93.548	Monopterus_albus
ENSUMAG00000006556	LSM7	79	97.030	MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	Mus_caroli
ENSUMAG00000006556	LSM7	79	97.030	ENSMUSG00000035215	Lsm7	98	97.030	Mus_musculus
ENSUMAG00000006556	LSM7	79	97.030	MGP_PahariEiJ_G0031020	Lsm7	98	97.030	Mus_pahari
ENSUMAG00000006556	LSM7	79	97.030	MGP_SPRETEiJ_G0016425	Lsm7	98	97.030	Mus_spretus
ENSUMAG00000006556	LSM7	80	97.059	ENSMLUG00000013097	-	99	97.059	Myotis_lucifugus
ENSUMAG00000006556	LSM7	82	88.571	ENSMLUG00000024002	-	86	91.398	Myotis_lucifugus
ENSUMAG00000006556	LSM7	79	97.030	ENSNGAG00000021637	Lsm7	98	97.030	Nannospalax_galili
ENSUMAG00000006556	LSM7	80	92.157	ENSNBRG00000015770	lsm7	89	91.262	Neolamprologus_brichardi
ENSUMAG00000006556	LSM7	73	94.624	ENSNBRG00000001237	-	74	94.565	Neolamprologus_brichardi
ENSUMAG00000006556	LSM7	79	99.010	ENSNLEG00000002265	LSM7	98	99.010	Nomascus_leucogenys
ENSUMAG00000006556	LSM7	79	92.079	ENSODEG00000018769	-	98	92.079	Octodon_degus
ENSUMAG00000006556	LSM7	79	99.010	ENSODEG00000013590	-	98	99.010	Octodon_degus
ENSUMAG00000006556	LSM7	79	78.218	ENSODEG00000008190	-	89	77.419	Octodon_degus
ENSUMAG00000006556	LSM7	82	90.476	ENSONIG00000001801	lsm7	80	93.548	Oreochromis_niloticus
ENSUMAG00000006556	LSM7	79	94.059	ENSORLG00000023951	lsm7	98	94.059	Oryzias_latipes
ENSUMAG00000006556	LSM7	79	94.059	ENSORLG00020022226	lsm7	98	94.059	Oryzias_latipes_hni
ENSUMAG00000006556	LSM7	84	90.654	ENSORLG00015020044	lsm7	100	89.815	Oryzias_latipes_hsok
ENSUMAG00000006556	LSM7	78	95.000	ENSOMEG00000012806	lsm7	98	94.059	Oryzias_melastigma
ENSUMAG00000006556	LSM7	80	96.078	ENSOGAG00000000144	-	100	96.078	Otolemur_garnettii
ENSUMAG00000006556	LSM7	79	87.129	ENSOGAG00000024373	-	91	87.097	Otolemur_garnettii
ENSUMAG00000006556	LSM7	80	98.039	ENSOARG00000014013	LSM7	99	98.039	Ovis_aries
ENSUMAG00000006556	LSM7	79	99.010	ENSPPAG00000026500	LSM7	98	99.010	Pan_paniscus
ENSUMAG00000006556	LSM7	79	100.000	ENSPPRG00000008624	LSM7	98	100.000	Panthera_pardus
ENSUMAG00000006556	LSM7	79	100.000	ENSPTIG00000016252	LSM7	98	100.000	Panthera_tigris_altaica
ENSUMAG00000006556	LSM7	79	99.010	ENSPTRG00000010233	LSM7	98	99.010	Pan_troglodytes
ENSUMAG00000006556	LSM7	79	99.010	ENSPANG00000020668	LSM7	98	99.010	Papio_anubis
ENSUMAG00000006556	LSM7	80	95.146	ENSPKIG00000011325	lsm7	97	97.000	Paramormyrops_kingsleyae
ENSUMAG00000006556	LSM7	78	98.000	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSUMAG00000006556	LSM7	78	95.000	ENSPMGG00000006498	lsm7	98	94.059	Periophthalmus_magnuspinnatus
ENSUMAG00000006556	LSM7	78	99.000	ENSPCIG00000030454	LSM7	98	99.000	Phascolarctos_cinereus
ENSUMAG00000006556	LSM7	79	94.059	ENSPFOG00000012467	lsm7	90	93.137	Poecilia_formosa
ENSUMAG00000006556	LSM7	81	92.308	ENSPLAG00000000252	lsm7	97	91.429	Poecilia_latipinna
ENSUMAG00000006556	LSM7	81	92.308	ENSPMEG00000000587	lsm7	97	91.429	Poecilia_mexicana
ENSUMAG00000006556	LSM7	64	72.289	ENSPREG00000016718	lsm7	63	74.684	Poecilia_reticulata
ENSUMAG00000006556	LSM7	92	67.797	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSUMAG00000006556	LSM7	79	99.010	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSUMAG00000006556	LSM7	78	94.000	ENSPNYG00000006938	lsm7	90	93.548	Pundamilia_nyererei
ENSUMAG00000006556	LSM7	78	95.000	ENSPNAG00000010141	lsm7	99	94.059	Pygocentrus_nattereri
ENSUMAG00000006556	LSM7	79	97.030	ENSRNOG00000019552	Lsm7	98	97.030	Rattus_norvegicus
ENSUMAG00000006556	LSM7	79	99.010	ENSRBIG00000035978	LSM7	98	99.010	Rhinopithecus_bieti
ENSUMAG00000006556	LSM7	79	99.010	ENSRROG00000034044	LSM7	98	99.010	Rhinopithecus_roxellana
ENSUMAG00000006556	LSM7	67	49.438	YNL147W	-	75	48.837	Saccharomyces_cerevisiae
ENSUMAG00000006556	LSM7	79	99.010	ENSSBOG00000034899	LSM7	98	99.010	Saimiri_boliviensis_boliviensis
ENSUMAG00000006556	LSM7	78	95.000	ENSSFOG00015006728	lsm7	98	94.059	Scleropages_formosus
ENSUMAG00000006556	LSM7	79	94.059	ENSSMAG00000004195	lsm7	93	94.059	Scophthalmus_maximus
ENSUMAG00000006556	LSM7	78	95.000	ENSSDUG00000001863	lsm7	98	94.059	Seriola_dumerili
ENSUMAG00000006556	LSM7	78	95.000	ENSSLDG00000016339	lsm7	98	94.059	Seriola_lalandi_dorsalis
ENSUMAG00000006556	LSM7	84	90.654	ENSSPAG00000015221	lsm7	98	94.059	Stegastes_partitus
ENSUMAG00000006556	LSM7	79	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSUMAG00000006556	LSM7	78	97.000	ENSTGUG00000000067	LSM7	99	97.000	Taeniopygia_guttata
ENSUMAG00000006556	LSM7	78	95.000	ENSTRUG00000022913	lsm7	98	94.059	Takifugu_rubripes
ENSUMAG00000006556	LSM7	78	95.000	ENSTNIG00000015525	lsm7	98	94.059	Tetraodon_nigroviridis
ENSUMAG00000006556	LSM7	55	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSUMAG00000006556	LSM7	81	98.077	ENSUAMG00000000912	LSM7	87	98.077	Ursus_americanus
ENSUMAG00000006556	LSM7	55	100.000	ENSVVUG00000002640	LSM7	65	100.000	Vulpes_vulpes
ENSUMAG00000006556	LSM7	78	95.000	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSUMAG00000006556	LSM7	79	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSUMAG00000006556	LSM7	79	95.050	ENSXMAG00000018630	lsm7	98	95.050	Xiphophorus_maculatus