EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSUMAG00000006652 (Gene tree)
Gene ID
103675150
Gene Symbol
UPF1
Alias
HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name
UPF1%2C RNA helicase and ATPase
Gene Type
protein_coding
Species
Ursus_maritimus
Status
putative
Strand
Minus strand
Length
25388 bases
Position
chrKK498686.1:10953479-10978866
Accession
103675150
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSUMAP00000009634UPF1_Zn_bindPF09416.106.9e-7511
ENSUMAP00000009612UPF1_Zn_bindPF09416.107.1e-7511
ENSUMAP00000009605UPF1_Zn_bindPF09416.107.3e-7511
ENSUMAP00000009617UPF1_Zn_bindPF09416.107.4e-7511
ENSUMAP00000009637UPF1_Zn_bindPF09416.107.5e-7511
ENSUMAP00000009556UPF1_Zn_bindPF09416.101e-5411
ENSUMAP00000009556ResIIIPF04851.152.3e-0511
ENSUMAP00000009634ResIIIPF04851.152.6e-0511
ENSUMAP00000009612ResIIIPF04851.152.6e-0511
ENSUMAP00000009605ResIIIPF04851.152.7e-0511
ENSUMAP00000009617ResIIIPF04851.152.7e-0511
ENSUMAP00000009637ResIIIPF04851.152.8e-0511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSUMAT00000011494UPF1-2023219-ENSUMAP000000096051072 (aa)--
ENSUMAT00000011526UPF1-2063288-ENSUMAP000000096371095 (aa)--
ENSUMAT00000011501UPF1-2033189XM_008704170ENSUMAP000000096121062 (aa)XP_008702392-
ENSUMAT00000011506UPF1-2043237-ENSUMAP000000096171078 (aa)--
ENSUMAT00000011434UPF1-2013118-ENSUMAP00000009556969 (aa)--
ENSUMAT00000011523UPF1-2053138-ENSUMAP000000096341045 (aa)--
Gene Model
Click here to download ENSUMAG00000006652's gene model file
Pathways
Pathway IDPathway NameSource
umr03013RNA transportKEGG
umr03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000006652's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSUMAG00000006652UPF15131.648ENSUMAG00000018347IGHMBP25432.022
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSUMAG00000006652UPF19999.896ENSG00000005007UPF19697.961Homo_sapiens
ENSUMAG00000006652UPF19993.705ENSAPOG00000023773upf19593.601Acanthochromis_polyacanthus
ENSUMAG00000006652UPF19995.238ENSAPOG00000010916-9594.923Acanthochromis_polyacanthus
ENSUMAG00000006652UPF19998.872ENSAMEG00000011474UPF19698.605Ailuropoda_melanoleuca
ENSUMAG00000006652UPF19993.402ENSACIG00000019949upf19593.601Amphilophus_citrinellus
ENSUMAG00000006652UPF19994.813ENSACIG00000010985-10095.122Amphilophus_citrinellus
ENSUMAG00000006652UPF19995.238ENSAOCG00000006352-10092.502Amphiprion_ocellaris
ENSUMAG00000006652UPF19993.154ENSAOCG00000018519upf19593.573Amphiprion_ocellaris
ENSUMAG00000006652UPF19993.154ENSAPEG00000016344upf19593.573Amphiprion_percula
ENSUMAG00000006652UPF19995.238ENSAPEG00000006292-10092.502Amphiprion_percula
ENSUMAG00000006652UPF19995.238ENSATEG00000016606-9594.923Anabas_testudineus
ENSUMAG00000006652UPF19992.159ENSATEG00000017867upf19592.925Anabas_testudineus
ENSUMAG00000006652UPF19998.154ENSAPLG00000009175UPF110097.913Anas_platyrhynchos
ENSUMAG00000006652UPF19997.336ENSANAG00000024107UPF19797.106Aotus_nancymaae
ENSUMAG00000006652UPF19994.928ENSACLG00000022630-9594.444Astatotilapia_calliptera
ENSUMAG00000006652UPF19993.196ENSACLG00000007181upf19593.410Astatotilapia_calliptera
ENSUMAG00000006652UPF19995.553ENSAMXG00000042187upf19991.916Astyanax_mexicanus
ENSUMAG00000006652UPF19998.972ENSBTAG00000020922UPF19598.972Bos_taurus
ENSUMAG00000006652UPF18654.846WBGene00004880smg-29550.338Caenorhabditis_elegans
ENSUMAG00000006652UPF19998.769ENSCJAG00000019627UPF19697.961Callithrix_jacchus
ENSUMAG00000006652UPF19999.065ENSCAFG00000014578UPF19599.065Canis_familiaris
ENSUMAG00000006652UPF199100.000ENSCAFG00020012347UPF19598.680Canis_lupus_dingo
ENSUMAG00000006652UPF199100.000ENSCHIG00000011018UPF19698.239Capra_hircus
ENSUMAG00000006652UPF19998.564ENSTSYG00000008877UPF19998.407Carlito_syrichta
ENSUMAG00000006652UPF19997.949ENSCAPG00000005758UPF19697.820Cavia_aperea
ENSUMAG00000006652UPF19997.949ENSCPOG00000025463UPF19498.473Cavia_porcellus
ENSUMAG00000006652UPF19999.896ENSCCAG00000032175UPF19598.690Cebus_capucinus
ENSUMAG00000006652UPF19998.769ENSCATG00000040306UPF19998.017Cercocebus_atys
ENSUMAG00000006652UPF19998.564ENSCLAG00000004037UPF19999.524Chinchilla_lanigera
ENSUMAG00000006652UPF19999.896ENSCSAG00000005276UPF19598.399Chlorocebus_sabaeus
ENSUMAG00000006652UPF19998.759ENSCPBG00000012513UPF19498.565Chrysemys_picta_bellii
ENSUMAG00000006652UPF17484.240ENSCING00000021399-9183.681Ciona_intestinalis
ENSUMAG00000006652UPF19975.077ENSCSAVG00000006533-9474.187Ciona_savignyi
ENSUMAG00000006652UPF19998.769ENSCANG00000029819UPF19998.688Colobus_angolensis_palliatus
ENSUMAG00000006652UPF19999.170ENSCGRG00001021067Upf19597.923Cricetulus_griseus_chok1gshd
ENSUMAG00000006652UPF19998.097ENSCGRG00000013480Upf19998.032Cricetulus_griseus_crigri
ENSUMAG00000006652UPF19988.095ENSCSEG00000017239upf19588.027Cynoglossus_semilaevis
ENSUMAG00000006652UPF19995.233ENSCSEG00000016159-9594.823Cynoglossus_semilaevis
ENSUMAG00000006652UPF19995.031ENSCVAG00000010561upf19990.463Cyprinodon_variegatus
ENSUMAG00000006652UPF19995.450ENSDARG00000016302upf19991.735Danio_rerio
ENSUMAG00000006652UPF110095.527ENSDORG00000009984Upf19795.527Dipodomys_ordii
ENSUMAG00000006652UPF18376.208FBgn0030354Upf17970.992Drosophila_melanogaster
ENSUMAG00000006652UPF15290.203ENSEBUG00000010069upf19386.538Eptatretus_burgeri
ENSUMAG00000006652UPF19999.896ENSEASG00005006549UPF19598.679Equus_asinus_asinus
ENSUMAG00000006652UPF19999.896ENSECAG00000010639UPF19598.679Equus_caballus
ENSUMAG00000006652UPF19992.490ENSELUG00000020917upf19691.714Esox_lucius
ENSUMAG00000006652UPF19994.245ENSELUG00000012916-9593.821Esox_lucius
ENSUMAG00000006652UPF19999.065ENSFCAG00000009757UPF19599.065Felis_catus
ENSUMAG00000006652UPF19999.067ENSFALG00000009312UPF19897.366Ficedula_albicollis
ENSUMAG00000006652UPF19998.462ENSFDAG00000014816UPF19999.429Fukomys_damarensis
ENSUMAG00000006652UPF19097.205ENSFHEG00000016276-9694.500Fundulus_heteroclitus
ENSUMAG00000006652UPF19991.179ENSFHEG00000006428upf19590.237Fundulus_heteroclitus
ENSUMAG00000006652UPF19993.449ENSGMOG00000007541upf19593.934Gadus_morhua
ENSUMAG00000006652UPF19999.274ENSGALG00000003220UPF19597.923Gallus_gallus
ENSUMAG00000006652UPF17195.533ENSGAFG00000015443-8893.166Gambusia_affinis
ENSUMAG00000006652UPF19994.922ENSGAFG00000004831upf19594.247Gambusia_affinis
ENSUMAG00000006652UPF19999.170ENSGAGG00000022217UPF19697.830Gopherus_agassizii
ENSUMAG00000006652UPF19999.896ENSGGOG00000002608UPF19999.712Gorilla_gorilla
ENSUMAG00000006652UPF18888.396ENSHBUG00000014694upf19086.207Haplochromis_burtoni
ENSUMAG00000006652UPF186100.000ENSHBUG00000008939upf190100.000Haplochromis_burtoni
ENSUMAG00000006652UPF19998.410ENSHGLG00000010900UPF19598.410Heterocephalus_glaber_female
ENSUMAG00000006652UPF19996.802ENSHGLG00100005904UPF19796.802Heterocephalus_glaber_male
ENSUMAG00000006652UPF19994.197ENSHCOG00000008918upf110094.004Hippocampus_comes
ENSUMAG00000006652UPF19996.381ENSIPUG00000005108UPF19992.280Ictalurus_punctatus
ENSUMAG00000006652UPF19999.689ENSSTOG00000009196UPF19698.138Ictidomys_tridecemlineatus
ENSUMAG00000006652UPF19997.846ENSJJAG00000023151Upf19597.755Jaculus_jaculus
ENSUMAG00000006652UPF19995.238ENSKMAG00000004962upf19594.732Kryptolebias_marmoratus
ENSUMAG00000006652UPF19995.036ENSLBEG00000027848-9594.545Labrus_bergylta
ENSUMAG00000006652UPF19991.837ENSLBEG00000014862upf19692.041Labrus_bergylta
ENSUMAG00000006652UPF17297.418ENSLACG00000008482UPF110097.418Latimeria_chalumnae
ENSUMAG00000006652UPF19997.617ENSLOCG00000002072upf19993.449Lepisosteus_oculatus
ENSUMAG00000006652UPF19998.408ENSLAFG00000014963UPF19598.408Loxodonta_africana
ENSUMAG00000006652UPF19998.769ENSMFAG00000037748UPF19697.961Macaca_fascicularis
ENSUMAG00000006652UPF19998.769ENSMMUG00000023286UPF19697.961Macaca_mulatta
ENSUMAG00000006652UPF19998.769ENSMNEG00000000046UPF19697.961Macaca_nemestrina
ENSUMAG00000006652UPF19998.769ENSMLEG00000028404UPF19999.715Mandrillus_leucophaeus
ENSUMAG00000006652UPF19994.312ENSMAMG00000006231-9594.450Mastacembelus_armatus
ENSUMAG00000006652UPF19992.057ENSMAMG00000006229upf19592.830Mastacembelus_armatus
ENSUMAG00000006652UPF19994.928ENSMZEG00005016386-9594.444Maylandia_zebra
ENSUMAG00000006652UPF19991.963ENSMZEG00005003489upf19593.175Maylandia_zebra
ENSUMAG00000006652UPF19997.643ENSMGAG00000004745UPF110097.909Meleagris_gallopavo
ENSUMAG00000006652UPF19899.144ENSMAUG00000011398Upf19599.144Mesocricetus_auratus
ENSUMAG00000006652UPF19999.793ENSMICG00000001659UPF19598.395Microcebus_murinus
ENSUMAG00000006652UPF19998.223ENSMOCG00000005699Upf19598.223Microtus_ochrogaster
ENSUMAG00000006652UPF19992.857ENSMMOG00000007537-9992.529Mola_mola
ENSUMAG00000006652UPF19993.257ENSMMOG00000007881upf19493.642Mola_mola
ENSUMAG00000006652UPF19999.274ENSMODG00000003689UPF19599.040Monodelphis_domestica
ENSUMAG00000006652UPF19993.568ENSMALG00000000144upf19593.282Monopterus_albus
ENSUMAG00000006652UPF19993.711ENSMALG00000018100-9593.613Monopterus_albus
ENSUMAG00000006652UPF19999.066MGP_CAROLIEiJ_G0031142Upf19598.129Mus_caroli
ENSUMAG00000006652UPF19999.066ENSMUSG00000058301Upf19598.129Mus_musculus
ENSUMAG00000006652UPF19999.066MGP_PahariEiJ_G0021607Upf19598.129Mus_pahari
ENSUMAG00000006652UPF19999.066MGP_SPRETEiJ_G0032260Upf19598.129Mus_spretus
ENSUMAG00000006652UPF199100.000ENSMPUG00000015516UPF19598.680Mustela_putorius_furo
ENSUMAG00000006652UPF19999.793ENSMLUG00000012122UPF19598.679Myotis_lucifugus
ENSUMAG00000006652UPF19998.036ENSNGAG00000024107Upf19598.036Nannospalax_galili
ENSUMAG00000006652UPF19991.237ENSNBRG00000000670upf19591.595Neolamprologus_brichardi
ENSUMAG00000006652UPF19993.795ENSNBRG00000022069-10093.975Neolamprologus_brichardi
ENSUMAG00000006652UPF19893.911ENSNLEG00000006062UPF19993.911Nomascus_leucogenys
ENSUMAG00000006652UPF18294.510ENSMEUG00000014146-7894.510Notamacropus_eugenii
ENSUMAG00000006652UPF19991.635ENSOPRG00000014018UPF19991.635Ochotona_princeps
ENSUMAG00000006652UPF19998.500ENSODEG00000012426UPF19598.500Octodon_degus
ENSUMAG00000006652UPF19995.031ENSONIG00000012729-9594.540Oreochromis_niloticus
ENSUMAG00000006652UPF19992.269ENSONIG00000010452upf19593.460Oreochromis_niloticus
ENSUMAG00000006652UPF19997.851ENSOANG00000004568UPF19597.844Ornithorhynchus_anatinus
ENSUMAG00000006652UPF19995.238ENSORLG00000008453upf19594.540Oryzias_latipes
ENSUMAG00000006652UPF110094.365ENSORLG00020014758upf19594.540Oryzias_latipes_hni
ENSUMAG00000006652UPF110094.365ENSORLG00015010165upf110090.847Oryzias_latipes_hsok
ENSUMAG00000006652UPF19995.342ENSOMEG00000003665upf19594.636Oryzias_melastigma
ENSUMAG00000006652UPF199100.000ENSOGAG00000012866UPF19598.584Otolemur_garnettii
ENSUMAG00000006652UPF19698.425ENSOARG00000010739UPF19697.605Ovis_aries
ENSUMAG00000006652UPF19998.782ENSPPAG00000043884UPF19798.782Pan_paniscus
ENSUMAG00000006652UPF19999.065ENSPPRG00000023470UPF19599.065Panthera_pardus
ENSUMAG00000006652UPF19997.793ENSPTIG00000010159UPF110097.795Panthera_tigris_altaica
ENSUMAG00000006652UPF19998.769ENSPTRG00000010721UPF19697.961Pan_troglodytes
ENSUMAG00000006652UPF19998.769ENSPANG00000008847UPF19697.961Papio_anubis
ENSUMAG00000006652UPF19394.495ENSPKIG00000006069upf19990.550Paramormyrops_kingsleyae
ENSUMAG00000006652UPF17998.039ENSPSIG00000009491UPF110098.039Pelodiscus_sinensis
ENSUMAG00000006652UPF19991.950ENSPMGG00000017327upf19591.420Periophthalmus_magnuspinnatus
ENSUMAG00000006652UPF19998.223ENSPEMG00000001085Upf19598.223Peromyscus_maniculatus_bairdii
ENSUMAG00000006652UPF19990.196ENSPMAG00000001206upf19688.480Petromyzon_marinus
ENSUMAG00000006652UPF19999.274ENSPCIG00000006156UPF19697.378Phascolarctos_cinereus
ENSUMAG00000006652UPF19995.026ENSPLAG00000016232-9594.343Poecilia_latipinna
ENSUMAG00000006652UPF19992.308ENSPLAG00000018155-9591.548Poecilia_latipinna
ENSUMAG00000006652UPF19992.968ENSPMEG00000011443-9592.153Poecilia_mexicana
ENSUMAG00000006652UPF19994.928ENSPMEG00000016319-9594.253Poecilia_mexicana
ENSUMAG00000006652UPF19992.821ENSPREG00000009940upf19592.118Poecilia_reticulata
ENSUMAG00000006652UPF19994.819ENSPREG00000011247-9594.151Poecilia_reticulata
ENSUMAG00000006652UPF19993.340ENSPPYG00000009752UPF19592.771Pongo_abelii
ENSUMAG00000006652UPF172100.000ENSPCAG00000012962UPF165100.000Procavia_capensis
ENSUMAG00000006652UPF19998.877ENSPCOG00000023813UPF19698.054Propithecus_coquereli
ENSUMAG00000006652UPF167100.000ENSPVAG00000003183UPF163100.000Pteropus_vampyrus
ENSUMAG00000006652UPF19994.928ENSPNYG00000016731-9594.444Pundamilia_nyererei
ENSUMAG00000006652UPF19991.963ENSPNYG00000003694upf19593.175Pundamilia_nyererei
ENSUMAG00000006652UPF19996.277ENSPNAG00000025614upf19991.916Pygocentrus_nattereri
ENSUMAG00000006652UPF19999.066ENSRNOG00000020134Upf19598.129Rattus_norvegicus
ENSUMAG00000006652UPF19998.769ENSRBIG00000013894UPF19899.671Rhinopithecus_bieti
ENSUMAG00000006652UPF19998.769ENSRROG00000040935UPF19998.688Rhinopithecus_roxellana
ENSUMAG00000006652UPF17958.039YMR080CNAM78755.660Saccharomyces_cerevisiae
ENSUMAG00000006652UPF19998.769ENSSBOG00000023632UPF19898.224Saimiri_boliviensis_boliviensis
ENSUMAG00000006652UPF19898.955ENSSHAG00000010499UPF110098.955Sarcophilus_harrisii
ENSUMAG00000006652UPF19997.513ENSSFOG00015021095upf19997.318Scleropages_formosus
ENSUMAG00000006652UPF19991.735ENSSMAG00000005055upf19592.068Scophthalmus_maximus
ENSUMAG00000006652UPF19995.036ENSSMAG00000021018-9594.641Scophthalmus_maximus
ENSUMAG00000006652UPF19992.159ENSSDUG00000013320upf19593.113Seriola_dumerili
ENSUMAG00000006652UPF19995.243ENSSDUG00000009629-9594.928Seriola_dumerili
ENSUMAG00000006652UPF19993.107ENSSLDG00000020868upf19593.441Seriola_lalandi_dorsalis
ENSUMAG00000006652UPF19995.243ENSSLDG00000006878-9594.928Seriola_lalandi_dorsalis
ENSUMAG00000006652UPF19999.066ENSSPUG00000010538UPF19498.752Sphenodon_punctatus
ENSUMAG00000006652UPF19995.233ENSSPAG00000011521-9594.823Stegastes_partitus
ENSUMAG00000006652UPF19994.301ENSSPAG00000000003upf19987.659Stegastes_partitus
ENSUMAG00000006652UPF19999.896ENSSSCG00000039301UPF110099.808Sus_scrofa
ENSUMAG00000006652UPF18191.329ENSTGUG00000001057UPF19195.779Taeniopygia_guttata
ENSUMAG00000006652UPF19993.568ENSTRUG00000000150upf19592.898Takifugu_rubripes
ENSUMAG00000006652UPF19994.197ENSTRUG00000005131-9593.768Takifugu_rubripes
ENSUMAG00000006652UPF19995.777ENSTTRG00000011544UPF19495.690Tursiops_truncatus
ENSUMAG00000006652UPF199100.000ENSUAMG00000007093UPF19598.775Ursus_americanus
ENSUMAG00000006652UPF199100.000ENSVVUG00000007797UPF19598.680Vulpes_vulpes
ENSUMAG00000006652UPF19983.633ENSXETG00000013602upf19482.945Xenopus_tropicalis
ENSUMAG00000006652UPF19994.922ENSXCOG00000005764-10094.762Xiphophorus_couchianus
ENSUMAG00000006652UPF19692.780ENSXCOG00000015275-9191.849Xiphophorus_couchianus
ENSUMAG00000006652UPF19992.850ENSXMAG00000001703-9592.042Xiphophorus_maculatus
ENSUMAG00000006652UPF19994.824ENSXMAG00000002540-9594.061Xiphophorus_maculatus

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