EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000006730 (Gene tree)
Gene ID: 103661985
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 87409 bases
Position: chrKK498582.1:4951448-5038856
Accession: 11568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000009019	SpoU_methylase	PF00588.19	1.6e-31	1	1
ENSUMAP00000009051	SpoU_methylase	PF00588.19	1.6e-31	1	1
ENSUMAP00000009030	SpoU_methylase	PF00588.19	1.6e-31	1	1
ENSUMAP00000009050	SpoU_methylase	PF00588.19	1.7e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000010791	TARBP1-202	4023	-	ENSUMAP00000009030	1340 (aa)	-	-
ENSUMAT00000010779	TARBP1-201	3930	-	ENSUMAP00000009019	1309 (aa)	-	-
ENSUMAT00000010813	TARBP1-204	4017	-	ENSUMAP00000009051	1338 (aa)	-	-
ENSUMAT00000010811	TARBP1-203	4044	-	ENSUMAP00000009050	1347 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000006730's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000006730's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000006730	TARBP1	99	85.166	ENSG00000059588	TARBP1	82	85.166	Homo_sapiens
ENSUMAG00000006730	TARBP1	99	44.592	ENSAPOG00000016419	si:dkey-85a20.4	82	44.592	Acanthochromis_polyacanthus
ENSUMAG00000006730	TARBP1	99	97.741	ENSAMEG00000003359	TARBP1	97	97.741	Ailuropoda_melanoleuca
ENSUMAG00000006730	TARBP1	99	44.239	ENSATEG00000020266	si:dkey-85a20.4	81	44.198	Anabas_testudineus
ENSUMAG00000006730	TARBP1	99	66.443	ENSAPLG00000007666	TARBP1	99	67.022	Anas_platyrhynchos
ENSUMAG00000006730	TARBP1	98	60.380	ENSACAG00000001142	TARBP1	82	60.380	Anolis_carolinensis
ENSUMAG00000006730	TARBP1	99	81.852	ENSANAG00000022031	TARBP1	84	81.852	Aotus_nancymaae
ENSUMAG00000006730	TARBP1	99	85.553	ENSBTAG00000004517	TARBP1	82	85.553	Bos_taurus
ENSUMAG00000006730	TARBP1	99	84.413	ENSCJAG00000018155	TARBP1	82	84.413	Callithrix_jacchus
ENSUMAG00000006730	TARBP1	99	92.470	ENSCAFG00000011533	TARBP1	94	92.470	Canis_familiaris
ENSUMAG00000006730	TARBP1	99	92.331	ENSCAFG00020027141	TARBP1	82	92.331	Canis_lupus_dingo
ENSUMAG00000006730	TARBP1	99	84.755	ENSCHIG00000011437	TARBP1	81	84.755	Capra_hircus
ENSUMAG00000006730	TARBP1	98	84.070	ENSTSYG00000010382	TARBP1	99	83.121	Carlito_syrichta
ENSUMAG00000006730	TARBP1	95	69.195	ENSCAPG00000010831	TARBP1	99	69.321	Cavia_aperea
ENSUMAG00000006730	TARBP1	99	78.238	ENSCPOG00000013995	TARBP1	83	78.733	Cavia_porcellus
ENSUMAG00000006730	TARBP1	99	84.864	ENSCCAG00000037278	TARBP1	82	84.864	Cebus_capucinus
ENSUMAG00000006730	TARBP1	99	84.789	ENSCATG00000011754	TARBP1	82	84.789	Cercocebus_atys
ENSUMAG00000006730	TARBP1	98	79.100	ENSCLAG00000003655	TARBP1	96	79.297	Chinchilla_lanigera
ENSUMAG00000006730	TARBP1	96	84.735	ENSCSAG00000010100	TARBP1	99	84.735	Chlorocebus_sabaeus
ENSUMAG00000006730	TARBP1	92	69.368	ENSCPBG00000005587	TARBP1	79	78.369	Chrysemys_picta_bellii
ENSUMAG00000006730	TARBP1	99	84.789	ENSCANG00000034343	TARBP1	98	84.789	Colobus_angolensis_palliatus
ENSUMAG00000006730	TARBP1	99	77.627	ENSCGRG00001016690	Tarbp1	84	77.627	Cricetulus_griseus_chok1gshd
ENSUMAG00000006730	TARBP1	99	77.627	ENSCGRG00000016893	Tarbp1	90	77.627	Cricetulus_griseus_crigri
ENSUMAG00000006730	TARBP1	99	41.449	ENSCSEG00000005255	si:dkey-85a20.4	82	45.035	Cynoglossus_semilaevis
ENSUMAG00000006730	TARBP1	96	46.160	ENSDARG00000079055	si:dkey-85a20.4	99	53.114	Danio_rerio
ENSUMAG00000006730	TARBP1	99	85.607	ENSDNOG00000008637	TARBP1	81	85.607	Dasypus_novemcinctus
ENSUMAG00000006730	TARBP1	97	74.730	ENSDORG00000007984	Tarbp1	100	74.730	Dipodomys_ordii
ENSUMAG00000006730	TARBP1	99	89.406	ENSEASG00005000252	TARBP1	83	88.897	Equus_asinus_asinus
ENSUMAG00000006730	TARBP1	99	88.881	ENSECAG00000023673	TARBP1	81	90.634	Equus_caballus
ENSUMAG00000006730	TARBP1	97	44.328	ENSELUG00000012193	si:dkey-85a20.4	82	44.328	Esox_lucius
ENSUMAG00000006730	TARBP1	99	86.757	ENSFCAG00000014183	TARBP1	81	86.757	Felis_catus
ENSUMAG00000006730	TARBP1	97	67.331	ENSFALG00000013565	TARBP1	99	67.176	Ficedula_albicollis
ENSUMAG00000006730	TARBP1	96	75.610	ENSFDAG00000001308	TARBP1	99	75.802	Fukomys_damarensis
ENSUMAG00000006730	TARBP1	94	53.125	ENSFHEG00000007565	si:dkey-85a20.4	81	53.125	Fundulus_heteroclitus
ENSUMAG00000006730	TARBP1	98	42.846	ENSGMOG00000004549	si:dkey-85a20.4	95	42.878	Gadus_morhua
ENSUMAG00000006730	TARBP1	98	61.498	ENSGALG00000011000	TARBP1	84	59.805	Gallus_gallus
ENSUMAG00000006730	TARBP1	97	44.453	ENSGAFG00000007387	si:dkey-85a20.4	80	44.336	Gambusia_affinis
ENSUMAG00000006730	TARBP1	99	44.000	ENSGACG00000005865	si:dkey-85a20.4	94	43.884	Gasterosteus_aculeatus
ENSUMAG00000006730	TARBP1	99	70.451	ENSGAGG00000012102	TARBP1	85	70.451	Gopherus_agassizii
ENSUMAG00000006730	TARBP1	99	82.044	ENSGGOG00000022879	TARBP1	97	81.968	Gorilla_gorilla
ENSUMAG00000006730	TARBP1	98	44.856	ENSHBUG00000008877	si:dkey-85a20.4	81	44.856	Haplochromis_burtoni
ENSUMAG00000006730	TARBP1	99	78.991	ENSHGLG00000011592	TARBP1	83	79.186	Heterocephalus_glaber_female
ENSUMAG00000006730	TARBP1	99	78.959	ENSHGLG00100015169	TARBP1	91	78.959	Heterocephalus_glaber_male
ENSUMAG00000006730	TARBP1	96	43.656	ENSIPUG00000005249	si:dkey-85a20.4	79	43.030	Ictalurus_punctatus
ENSUMAG00000006730	TARBP1	99	75.922	ENSSTOG00000032291	TARBP1	95	75.922	Ictidomys_tridecemlineatus
ENSUMAG00000006730	TARBP1	99	73.906	ENSJJAG00000017840	Tarbp1	91	73.906	Jaculus_jaculus
ENSUMAG00000006730	TARBP1	83	45.490	ENSKMAG00000017546	si:dkey-85a20.4	71	45.490	Kryptolebias_marmoratus
ENSUMAG00000006730	TARBP1	76	48.883	ENSLBEG00000012132	si:dkey-85a20.4	74	49.398	Labrus_bergylta
ENSUMAG00000006730	TARBP1	98	55.714	ENSLACG00000004337	TARBP1	80	55.714	Latimeria_chalumnae
ENSUMAG00000006730	TARBP1	98	50.075	ENSLOCG00000016214	si:dkey-85a20.4	81	50.075	Lepisosteus_oculatus
ENSUMAG00000006730	TARBP1	99	84.528	ENSLAFG00000011394	TARBP1	84	84.528	Loxodonta_africana
ENSUMAG00000006730	TARBP1	99	82.078	ENSMFAG00000041068	TARBP1	83	82.078	Macaca_fascicularis
ENSUMAG00000006730	TARBP1	99	82.003	ENSMMUG00000021703	TARBP1	82	82.003	Macaca_mulatta
ENSUMAG00000006730	TARBP1	99	84.789	ENSMNEG00000045002	TARBP1	82	84.789	Macaca_nemestrina
ENSUMAG00000006730	TARBP1	99	84.864	ENSMLEG00000044182	TARBP1	98	84.864	Mandrillus_leucophaeus
ENSUMAG00000006730	TARBP1	97	45.770	ENSMAMG00000021760	si:dkey-85a20.4	82	44.921	Mastacembelus_armatus
ENSUMAG00000006730	TARBP1	98	45.044	ENSMZEG00005005751	si:dkey-85a20.4	81	45.044	Maylandia_zebra
ENSUMAG00000006730	TARBP1	99	77.324	ENSMAUG00000020968	Tarbp1	84	77.324	Mesocricetus_auratus
ENSUMAG00000006730	TARBP1	99	75.940	ENSMICG00000015280	TARBP1	81	75.940	Microcebus_murinus
ENSUMAG00000006730	TARBP1	99	76.021	ENSMOCG00000004128	Tarbp1	84	76.021	Microtus_ochrogaster
ENSUMAG00000006730	TARBP1	96	43.840	ENSMMOG00000007795	si:dkey-85a20.4	81	43.465	Mola_mola
ENSUMAG00000006730	TARBP1	99	74.322	ENSMODG00000008504	TARBP1	80	74.322	Monodelphis_domestica
ENSUMAG00000006730	TARBP1	98	44.078	ENSMALG00000002916	si:dkey-85a20.4	82	44.162	Monopterus_albus
ENSUMAG00000006730	TARBP1	99	76.248	MGP_CAROLIEiJ_G0031729	Tarbp1	79	82.308	Mus_caroli
ENSUMAG00000006730	TARBP1	99	75.794	ENSMUSG00000090290	Tarbp1	84	75.794	Mus_musculus
ENSUMAG00000006730	TARBP1	99	75.883	MGP_PahariEiJ_G0023326	Tarbp1	84	75.883	Mus_pahari
ENSUMAG00000006730	TARBP1	99	75.546	MGP_SPRETEiJ_G0032846	Tarbp1	84	75.546	Mus_spretus
ENSUMAG00000006730	TARBP1	93	91.172	ENSMPUG00000002802	TARBP1	100	91.172	Mustela_putorius_furo
ENSUMAG00000006730	TARBP1	99	77.769	ENSMLUG00000002414	TARBP1	97	77.769	Myotis_lucifugus
ENSUMAG00000006730	TARBP1	99	85.316	ENSNLEG00000002518	TARBP1	82	85.316	Nomascus_leucogenys
ENSUMAG00000006730	TARBP1	79	83.850	ENSOPRG00000013822	TARBP1	65	83.850	Ochotona_princeps
ENSUMAG00000006730	TARBP1	99	77.677	ENSODEG00000005238	TARBP1	86	77.903	Octodon_degus
ENSUMAG00000006730	TARBP1	97	45.808	ENSONIG00000009789	si:dkey-85a20.4	93	45.808	Oreochromis_niloticus
ENSUMAG00000006730	TARBP1	99	83.535	ENSOCUG00000017418	TARBP1	81	83.535	Oryctolagus_cuniculus
ENSUMAG00000006730	TARBP1	97	42.675	ENSORLG00000010529	si:dkey-85a20.4	80	42.772	Oryzias_latipes
ENSUMAG00000006730	TARBP1	97	43.040	ENSORLG00020019264	si:dkey-85a20.4	80	43.178	Oryzias_latipes_hni
ENSUMAG00000006730	TARBP1	97	42.889	ENSORLG00015003276	si:dkey-85a20.4	80	43.028	Oryzias_latipes_hsok
ENSUMAG00000006730	TARBP1	99	81.161	ENSOGAG00000002379	TARBP1	82	81.161	Otolemur_garnettii
ENSUMAG00000006730	TARBP1	99	84.673	ENSOARG00000003434	TARBP1	88	84.673	Ovis_aries
ENSUMAG00000006730	TARBP1	99	85.090	ENSPPAG00000028097	TARBP1	97	85.090	Pan_paniscus
ENSUMAG00000006730	TARBP1	99	85.929	ENSPPRG00000013561	TARBP1	86	85.854	Panthera_pardus
ENSUMAG00000006730	TARBP1	99	89.391	ENSPTIG00000009281	TARBP1	99	89.391	Panthera_tigris_altaica
ENSUMAG00000006730	TARBP1	99	84.940	ENSPTRG00000002124	TARBP1	82	84.940	Pan_troglodytes
ENSUMAG00000006730	TARBP1	99	85.015	ENSPANG00000021933	TARBP1	82	85.015	Papio_anubis
ENSUMAG00000006730	TARBP1	98	46.691	ENSPKIG00000016716	si:dkey-85a20.4	80	46.691	Paramormyrops_kingsleyae
ENSUMAG00000006730	TARBP1	96	68.634	ENSPSIG00000010699	TARBP1	99	68.634	Pelodiscus_sinensis
ENSUMAG00000006730	TARBP1	99	76.975	ENSPEMG00000006888	Tarbp1	88	76.975	Peromyscus_maniculatus_bairdii
ENSUMAG00000006730	TARBP1	89	83.495	ENSPCIG00000029710	TARBP1	80	83.495	Phascolarctos_cinereus
ENSUMAG00000006730	TARBP1	99	44.395	ENSPFOG00000013020	si:dkey-85a20.4	95	44.395	Poecilia_formosa
ENSUMAG00000006730	TARBP1	97	44.810	ENSPLAG00000006044	si:dkey-85a20.4	80	44.694	Poecilia_latipinna
ENSUMAG00000006730	TARBP1	97	44.810	ENSPMEG00000017857	si:dkey-85a20.4	80	44.694	Poecilia_mexicana
ENSUMAG00000006730	TARBP1	97	44.594	ENSPREG00000022753	si:dkey-85a20.4	80	44.594	Poecilia_reticulata
ENSUMAG00000006730	TARBP1	89	94.595	ENSPPYG00000000102	TARBP1	80	94.595	Pongo_abelii
ENSUMAG00000006730	TARBP1	82	87.013	ENSPCAG00000004808	TARBP1	68	87.013	Procavia_capensis
ENSUMAG00000006730	TARBP1	99	82.831	ENSPCOG00000005666	TARBP1	82	82.831	Propithecus_coquereli
ENSUMAG00000006730	TARBP1	98	69.588	ENSPVAG00000014798	TARBP1	81	69.588	Pteropus_vampyrus
ENSUMAG00000006730	TARBP1	98	44.131	ENSPNYG00000019135	si:dkey-85a20.4	81	44.131	Pundamilia_nyererei
ENSUMAG00000006730	TARBP1	99	70.877	ENSRNOG00000053574	Tarbp1	83	70.877	Rattus_norvegicus
ENSUMAG00000006730	TARBP1	99	78.539	ENSRBIG00000043362	TARBP1	90	78.539	Rhinopithecus_bieti
ENSUMAG00000006730	TARBP1	99	84.864	ENSRROG00000029527	TARBP1	85	84.864	Rhinopithecus_roxellana
ENSUMAG00000006730	TARBP1	99	84.488	ENSSBOG00000034503	TARBP1	95	84.488	Saimiri_boliviensis_boliviensis
ENSUMAG00000006730	TARBP1	99	74.419	ENSSHAG00000000013	TARBP1	98	74.419	Sarcophilus_harrisii
ENSUMAG00000006730	TARBP1	97	45.007	ENSSFOG00015002660	si:dkey-85a20.4	98	43.800	Scleropages_formosus
ENSUMAG00000006730	TARBP1	98	45.670	ENSSMAG00000007081	si:dkey-85a20.4	80	45.670	Scophthalmus_maximus
ENSUMAG00000006730	TARBP1	97	43.774	ENSSDUG00000023566	si:dkey-85a20.4	80	43.783	Seriola_dumerili
ENSUMAG00000006730	TARBP1	99	45.528	ENSSLDG00000020200	si:dkey-85a20.4	82	45.535	Seriola_lalandi_dorsalis
ENSUMAG00000006730	TARBP1	92	84.562	ENSSARG00000012207	TARBP1	76	84.562	Sorex_araneus
ENSUMAG00000006730	TARBP1	99	66.792	ENSSPUG00000015364	TARBP1	82	66.792	Sphenodon_punctatus
ENSUMAG00000006730	TARBP1	99	44.657	ENSSPAG00000007213	si:dkey-85a20.4	81	44.543	Stegastes_partitus
ENSUMAG00000006730	TARBP1	99	85.929	ENSSSCG00000010160	TARBP1	81	88.652	Sus_scrofa
ENSUMAG00000006730	TARBP1	97	66.667	ENSTGUG00000010214	TARBP1	100	66.667	Taeniopygia_guttata
ENSUMAG00000006730	TARBP1	97	43.192	ENSTNIG00000016586	si:dkey-85a20.4	95	43.505	Tetraodon_nigroviridis
ENSUMAG00000006730	TARBP1	85	98.113	ENSTTRG00000008707	TARBP1	75	98.113	Tursiops_truncatus
ENSUMAG00000006730	TARBP1	83	100.000	ENSVPAG00000007665	TARBP1	76	100.000	Vicugna_pacos
ENSUMAG00000006730	TARBP1	99	92.406	ENSVVUG00000007460	TARBP1	97	89.787	Vulpes_vulpes
ENSUMAG00000006730	TARBP1	99	55.240	ENSXETG00000016224	tarbp1	97	55.240	Xenopus_tropicalis
ENSUMAG00000006730	TARBP1	88	48.295	ENSXCOG00000011779	si:dkey-85a20.4	87	48.295	Xiphophorus_couchianus
ENSUMAG00000006730	TARBP1	79	41.280	ENSXMAG00000009600	si:dkey-85a20.4	100	42.115	Xiphophorus_maculatus