EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000007268 (Gene tree)
Gene ID: 103679559
Gene Symbol: SF1
Alias: ZCCHC25|ZFM1|ZNF162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 11955 bases
Position: chrKK498772.1:1001802-1013756
Accession: 12950
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000009697	KH_1	PF00013.29	2.3e-07	1	1
ENSUMAP00000009672	KH_1	PF00013.29	2.3e-07	1	1
ENSUMAP00000009691	KH_1	PF00013.29	2.6e-07	1	1
ENSUMAP00000009672	zf-CCHC	PF00098.23	0.00015	1	1
ENSUMAP00000009697	zf-CCHC	PF00098.23	0.00016	1	1
ENSUMAP00000009691	zf-CCHC	PF00098.23	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000011598	SF1-204	802	-	ENSUMAP00000009700	109 (aa)	-	-
ENSUMAT00000011589	SF1-202	1647	-	ENSUMAP00000009691	548 (aa)	-	-
ENSUMAT00000011595	SF1-203	1566	-	ENSUMAP00000009697	521 (aa)	-	-
ENSUMAT00000011566	SF1-201	1602	-	ENSUMAP00000009672	533 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000007268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000007268's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000007268	SF1	71	80.670	ENSAPOG00000012341	sf1	60	78.487	Acanthochromis_polyacanthus
ENSUMAG00000007268	SF1	93	99.768	ENSAMEG00000017828	SF1	79	99.771	Ailuropoda_melanoleuca
ENSUMAG00000007268	SF1	71	82.667	ENSACIG00000016514	sf1	61	80.149	Amphilophus_citrinellus
ENSUMAG00000007268	SF1	71	80.155	ENSAOCG00000010934	sf1	60	78.487	Amphiprion_ocellaris
ENSUMAG00000007268	SF1	71	80.155	ENSAPEG00000009498	sf1	60	78.487	Amphiprion_percula
ENSUMAG00000007268	SF1	71	81.579	ENSATEG00000001894	sf1	60	79.369	Anabas_testudineus
ENSUMAG00000007268	SF1	92	97.778	ENSANAG00000026664	-	96	98.522	Aotus_nancymaae
ENSUMAG00000007268	SF1	89	88.961	ENSANAG00000022607	-	88	89.041	Aotus_nancymaae
ENSUMAG00000007268	SF1	70	84.282	ENSACLG00000007633	sf1	61	79.562	Astatotilapia_calliptera
ENSUMAG00000007268	SF1	72	83.763	ENSAMXG00000003630	sf1	50	81.841	Astyanax_mexicanus
ENSUMAG00000007268	SF1	89	100.000	ENSBTAG00000001035	SF1	84	100.000	Bos_taurus
ENSUMAG00000007268	SF1	89	100.000	ENSCJAG00000002780	SF1	82	97.609	Callithrix_jacchus
ENSUMAG00000007268	SF1	90	98.864	ENSCAFG00000014239	SF1	76	98.879	Canis_familiaris
ENSUMAG00000007268	SF1	89	100.000	ENSCAFG00020014381	SF1	82	97.609	Canis_lupus_dingo
ENSUMAG00000007268	SF1	89	100.000	ENSCHIG00000025867	SF1	84	100.000	Capra_hircus
ENSUMAG00000007268	SF1	59	98.925	ENSTSYG00000033618	SF1	82	98.925	Carlito_syrichta
ENSUMAG00000007268	SF1	98	89.107	ENSCAPG00000010762	SF1	100	89.107	Cavia_aperea
ENSUMAG00000007268	SF1	95	98.871	ENSCPOG00000012290	SF1	85	99.562	Cavia_porcellus
ENSUMAG00000007268	SF1	88	88.017	ENSCCAG00000023781	-	88	87.885	Cebus_capucinus
ENSUMAG00000007268	SF1	95	98.864	ENSCCAG00000037881	SF1	96	98.768	Cebus_capucinus
ENSUMAG00000007268	SF1	95	98.864	ENSCATG00000011564	SF1	89	100.000	Cercocebus_atys
ENSUMAG00000007268	SF1	88	100.000	ENSCSAG00000007258	SF1	84	100.000	Chlorocebus_sabaeus
ENSUMAG00000007268	SF1	79	93.689	ENSCHOG00000006008	SF1	79	93.780	Choloepus_hoffmanni
ENSUMAG00000007268	SF1	87	89.231	ENSCPBG00000023763	SF1	59	91.574	Chrysemys_picta_bellii
ENSUMAG00000007268	SF1	72	58.115	ENSCING00000005564	-	74	60.372	Ciona_intestinalis
ENSUMAG00000007268	SF1	85	57.143	ENSCSAVG00000009055	-	88	55.014	Ciona_savignyi
ENSUMAG00000007268	SF1	89	100.000	ENSCANG00000042201	SF1	91	98.677	Colobus_angolensis_palliatus
ENSUMAG00000007268	SF1	94	98.409	ENSCGRG00001003677	Sf1	99	88.421	Cricetulus_griseus_chok1gshd
ENSUMAG00000007268	SF1	89	98.701	ENSCGRG00000001708	Sf1	100	89.107	Cricetulus_griseus_crigri
ENSUMAG00000007268	SF1	76	78.079	ENSCSEG00000014375	sf1	57	76.513	Cynoglossus_semilaevis
ENSUMAG00000007268	SF1	71	84.324	ENSCVAG00000001670	sf1	63	81.638	Cyprinodon_variegatus
ENSUMAG00000007268	SF1	75	81.013	ENSDARG00000008188	sf1	71	77.570	Danio_rerio
ENSUMAG00000007268	SF1	88	99.346	ENSDNOG00000001282	SF1	84	99.348	Dasypus_novemcinctus
ENSUMAG00000007268	SF1	93	100.000	ENSDORG00000016334	Sf1	82	97.609	Dipodomys_ordii
ENSUMAG00000007268	SF1	88	90.570	ENSETEG00000012830	SF1	64	89.278	Echinops_telfairi
ENSUMAG00000007268	SF1	88	99.564	ENSEASG00005018272	SF1	84	99.565	Equus_asinus_asinus
ENSUMAG00000007268	SF1	88	99.782	ENSECAG00000024544	SF1	84	99.783	Equus_caballus
ENSUMAG00000007268	SF1	75	99.237	ENSEEUG00000001058	SF1	100	99.237	Erinaceus_europaeus
ENSUMAG00000007268	SF1	69	81.481	ENSELUG00000013225	sf1	54	80.387	Esox_lucius
ENSUMAG00000007268	SF1	90	98.864	ENSFCAG00000012231	SF1	76	98.879	Felis_catus
ENSUMAG00000007268	SF1	92	99.535	ENSFDAG00000009833	SF1	100	89.464	Fukomys_damarensis
ENSUMAG00000007268	SF1	71	80.155	ENSFHEG00000022656	sf1	61	76.102	Fundulus_heteroclitus
ENSUMAG00000007268	SF1	62	87.651	ENSGMOG00000007469	sf1	62	86.431	Gadus_morhua
ENSUMAG00000007268	SF1	71	83.598	ENSGAFG00000019284	sf1	78	79.236	Gambusia_affinis
ENSUMAG00000007268	SF1	72	80.362	ENSGACG00000000826	sf1	67	78.079	Gasterosteus_aculeatus
ENSUMAG00000007268	SF1	87	89.011	ENSGAGG00000021691	SF1	64	91.353	Gopherus_agassizii
ENSUMAG00000007268	SF1	69	82.895	ENSHBUG00000011598	sf1	59	80.964	Haplochromis_burtoni
ENSUMAG00000007268	SF1	90	98.864	ENSHGLG00000009541	SF1	99	88.772	Heterocephalus_glaber_female
ENSUMAG00000007268	SF1	98	89.464	ENSHGLG00100013879	-	100	89.464	Heterocephalus_glaber_male
ENSUMAG00000007268	SF1	83	89.376	ENSHGLG00100008076	-	87	90.376	Heterocephalus_glaber_male
ENSUMAG00000007268	SF1	92	83.773	ENSHGLG00100008255	-	92	86.538	Heterocephalus_glaber_male
ENSUMAG00000007268	SF1	71	81.088	ENSHCOG00000011388	sf1	58	78.818	Hippocampus_comes
ENSUMAG00000007268	SF1	89	100.000	ENSSTOG00000009790	-	83	97.593	Ictidomys_tridecemlineatus
ENSUMAG00000007268	SF1	99	75.856	ENSSTOG00000024353	-	99	77.658	Ictidomys_tridecemlineatus
ENSUMAG00000007268	SF1	89	100.000	ENSJJAG00000011788	Sf1	82	97.391	Jaculus_jaculus
ENSUMAG00000007268	SF1	72	83.161	ENSKMAG00000005854	sf1	69	72.323	Kryptolebias_marmoratus
ENSUMAG00000007268	SF1	71	82.461	ENSLBEG00000019836	sf1	64	79.369	Labrus_bergylta
ENSUMAG00000007268	SF1	79	79.087	ENSLACG00000018493	SF1	74	78.554	Latimeria_chalumnae
ENSUMAG00000007268	SF1	71	84.881	ENSLOCG00000002130	sf1	59	81.955	Lepisosteus_oculatus
ENSUMAG00000007268	SF1	92	99.536	ENSLAFG00000007201	SF1	79	99.542	Loxodonta_africana
ENSUMAG00000007268	SF1	93	98.864	ENSMFAG00000033122	SF1	89	100.000	Macaca_fascicularis
ENSUMAG00000007268	SF1	90	98.864	ENSMMUG00000022606	SF1	99	99.509	Macaca_mulatta
ENSUMAG00000007268	SF1	95	98.864	ENSMNEG00000037901	SF1	89	100.000	Macaca_nemestrina
ENSUMAG00000007268	SF1	93	99.768	ENSMLEG00000040706	SF1	89	99.729	Mandrillus_leucophaeus
ENSUMAG00000007268	SF1	69	82.632	ENSMAMG00000001780	sf1	61	76.581	Mastacembelus_armatus
ENSUMAG00000007268	SF1	69	82.632	ENSMZEG00005009196	sf1	59	80.723	Maylandia_zebra
ENSUMAG00000007268	SF1	90	98.182	ENSMAUG00000014064	Sf1	99	88.421	Mesocricetus_auratus
ENSUMAG00000007268	SF1	90	98.864	ENSMICG00000001202	SF1	96	98.526	Microcebus_murinus
ENSUMAG00000007268	SF1	90	97.955	ENSMOCG00000022038	Sf1	99	88.246	Microtus_ochrogaster
ENSUMAG00000007268	SF1	71	81.720	ENSMMOG00000020474	sf1	60	76.399	Mola_mola
ENSUMAG00000007268	SF1	86	94.407	ENSMODG00000029407	SF1	97	94.407	Monodelphis_domestica
ENSUMAG00000007268	SF1	71	82.842	ENSMALG00000020521	sf1	69	76.179	Monopterus_albus
ENSUMAG00000007268	SF1	89	100.000	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSUMAG00000007268	SF1	89	100.000	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSUMAG00000007268	SF1	89	100.000	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSUMAG00000007268	SF1	89	100.000	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSUMAG00000007268	SF1	90	100.000	ENSMPUG00000012684	SF1	83	97.436	Mustela_putorius_furo
ENSUMAG00000007268	SF1	88	100.000	ENSMLUG00000015217	-	77	100.000	Myotis_lucifugus
ENSUMAG00000007268	SF1	86	94.432	ENSMLUG00000029800	-	77	94.843	Myotis_lucifugus
ENSUMAG00000007268	SF1	90	98.636	ENSNGAG00000005550	Sf1	99	88.772	Nannospalax_galili
ENSUMAG00000007268	SF1	71	83.690	ENSNBRG00000017606	sf1	60	82.045	Neolamprologus_brichardi
ENSUMAG00000007268	SF1	95	97.500	ENSNLEG00000005236	-	91	98.677	Nomascus_leucogenys
ENSUMAG00000007268	SF1	86	98.889	ENSMEUG00000013424	SF1	85	98.891	Notamacropus_eugenii
ENSUMAG00000007268	SF1	79	99.516	ENSOPRG00000005008	SF1	84	99.517	Ochotona_princeps
ENSUMAG00000007268	SF1	96	95.556	ENSODEG00000006102	-	82	95.556	Octodon_degus
ENSUMAG00000007268	SF1	69	82.895	ENSONIG00000015728	sf1	59	80.964	Oreochromis_niloticus
ENSUMAG00000007268	SF1	76	88.384	ENSOANG00000002909	SF1	97	87.786	Ornithorhynchus_anatinus
ENSUMAG00000007268	SF1	89	99.768	ENSOCUG00000026486	SF1	76	99.771	Oryctolagus_cuniculus
ENSUMAG00000007268	SF1	73	80.563	ENSORLG00000011853	sf1	58	78.049	Oryzias_latipes
ENSUMAG00000007268	SF1	73	80.563	ENSORLG00020011834	sf1	60	75.822	Oryzias_latipes_hni
ENSUMAG00000007268	SF1	72	80.366	ENSORLG00015012855	sf1	59	77.805	Oryzias_latipes_hsok
ENSUMAG00000007268	SF1	72	80.307	ENSOMEG00000005210	sf1	60	80.000	Oryzias_melastigma
ENSUMAG00000007268	SF1	90	98.864	ENSOGAG00000016196	SF1	78	98.879	Otolemur_garnettii
ENSUMAG00000007268	SF1	88	100.000	ENSOARG00000009166	SF1	81	100.000	Ovis_aries
ENSUMAG00000007268	SF1	95	98.438	ENSPPAG00000002799	-	96	100.000	Pan_paniscus
ENSUMAG00000007268	SF1	89	100.000	ENSPPRG00000013566	SF1	83	98.416	Panthera_pardus
ENSUMAG00000007268	SF1	98	95.780	ENSPTIG00000016141	SF1	98	95.780	Panthera_tigris_altaica
ENSUMAG00000007268	SF1	96	98.438	ENSPTRG00000003846	SF1	99	98.824	Pan_troglodytes
ENSUMAG00000007268	SF1	95	98.864	ENSPANG00000020754	SF1	89	100.000	Papio_anubis
ENSUMAG00000007268	SF1	64	78.235	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSUMAG00000007268	SF1	67	87.179	ENSPSIG00000003610	SF1	69	88.761	Pelodiscus_sinensis
ENSUMAG00000007268	SF1	90	99.076	ENSPEMG00000010463	Sf1	99	88.421	Peromyscus_maniculatus_bairdii
ENSUMAG00000007268	SF1	64	72.321	ENSPMAG00000008272	sf1	53	66.938	Petromyzon_marinus
ENSUMAG00000007268	SF1	90	97.500	ENSPCIG00000018173	SF1	78	100.000	Phascolarctos_cinereus
ENSUMAG00000007268	SF1	71	85.445	ENSPFOG00000013683	sf1	66	82.673	Poecilia_formosa
ENSUMAG00000007268	SF1	69	83.641	ENSPLAG00000018076	sf1	61	81.022	Poecilia_latipinna
ENSUMAG00000007268	SF1	69	83.641	ENSPMEG00000005726	sf1	62	81.265	Poecilia_mexicana
ENSUMAG00000007268	SF1	69	83.113	ENSPREG00000004155	sf1	59	80.779	Poecilia_reticulata
ENSUMAG00000007268	SF1	90	98.864	ENSPPYG00000003098	-	87	100.000	Pongo_abelii
ENSUMAG00000007268	SF1	88	99.344	ENSPCAG00000013631	SF1	68	99.345	Procavia_capensis
ENSUMAG00000007268	SF1	90	98.864	ENSPCOG00000027546	SF1	96	98.526	Propithecus_coquereli
ENSUMAG00000007268	SF1	88	99.344	ENSPVAG00000016938	SF1	69	99.345	Pteropus_vampyrus
ENSUMAG00000007268	SF1	69	82.632	ENSPNYG00000004673	sf1	59	80.723	Pundamilia_nyererei
ENSUMAG00000007268	SF1	71	85.450	ENSPNAG00000013072	sf1	59	83.168	Pygocentrus_nattereri
ENSUMAG00000007268	SF1	89	100.000	ENSRNOG00000021085	Sf1	82	96.957	Rattus_norvegicus
ENSUMAG00000007268	SF1	99	93.421	ENSRBIG00000042818	SF1	96	98.879	Rhinopithecus_bieti
ENSUMAG00000007268	SF1	93	96.099	ENSRROG00000045655	SF1	92	99.504	Rhinopithecus_roxellana
ENSUMAG00000007268	SF1	77	37.647	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSUMAG00000007268	SF1	98	77.930	ENSSBOG00000022267	-	99	80.482	Saimiri_boliviensis_boliviensis
ENSUMAG00000007268	SF1	78	92.195	ENSSHAG00000006841	SF1	75	95.037	Sarcophilus_harrisii
ENSUMAG00000007268	SF1	97	63.851	ENSSFOG00015021978	sf1	55	78.155	Scleropages_formosus
ENSUMAG00000007268	SF1	79	76.112	ENSSMAG00000007549	sf1	70	71.336	Scophthalmus_maximus
ENSUMAG00000007268	SF1	72	80.260	ENSSDUG00000003903	sf1	70	70.259	Seriola_dumerili
ENSUMAG00000007268	SF1	72	80.260	ENSSLDG00000013075	sf1	61	76.512	Seriola_lalandi_dorsalis
ENSUMAG00000007268	SF1	88	92.325	ENSSARG00000008180	SF1	88	91.904	Sorex_araneus
ENSUMAG00000007268	SF1	84	85.403	ENSSPUG00000012907	SF1	77	86.154	Sphenodon_punctatus
ENSUMAG00000007268	SF1	71	80.155	ENSSPAG00000019060	sf1	61	75.644	Stegastes_partitus
ENSUMAG00000007268	SF1	89	100.000	ENSSSCG00000013021	SF1	84	99.783	Sus_scrofa
ENSUMAG00000007268	SF1	75	72.111	ENSTNIG00000004820	sf1	79	68.779	Tetraodon_nigroviridis
ENSUMAG00000007268	SF1	88	100.000	ENSTBEG00000013133	SF1	71	100.000	Tupaia_belangeri
ENSUMAG00000007268	SF1	88	94.956	ENSTTRG00000008857	SF1	85	94.967	Tursiops_truncatus
ENSUMAG00000007268	SF1	69	100.000	ENSUAMG00000011977	SF1	73	100.000	Ursus_americanus
ENSUMAG00000007268	SF1	68	100.000	ENSVPAG00000011912	SF1	66	100.000	Vicugna_pacos
ENSUMAG00000007268	SF1	88	100.000	ENSVVUG00000028585	SF1	84	100.000	Vulpes_vulpes
ENSUMAG00000007268	SF1	81	80.690	ENSXETG00000008434	sf1	68	81.752	Xenopus_tropicalis
ENSUMAG00000007268	SF1	70	85.205	ENSXCOG00000003704	sf1	75	81.864	Xiphophorus_couchianus
ENSUMAG00000007268	SF1	71	83.377	ENSXMAG00000007822	sf1	62	79.236	Xiphophorus_maculatus