EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000009178 (Gene tree)
Gene ID: 103656308
Gene Symbol: APEX1
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 2617 bases
Position: chrKK499685.1:167911-170527
Accession: 103656308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000012329	Exo_endo_phos	PF03372.23	1.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000014638	APEX1-201	1293	XM_008683670	ENSUMAP00000012329	318 (aa)	XP_008681891	UPI0004E00EC9

Gene Model

Click here to download ENSUMAG00000009178's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000009178's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000009178	APEX1	100	95.283	ENSG00000100823	APEX1	100	95.283	Homo_sapiens
ENSUMAG00000009178	APEX1	88	69.176	ENSAPOG00000017002	apex1	95	67.698	Acanthochromis_polyacanthus
ENSUMAG00000009178	APEX1	100	99.057	ENSAMEG00000005418	APEX1	100	99.057	Ailuropoda_melanoleuca
ENSUMAG00000009178	APEX1	87	70.504	ENSACIG00000010653	apex1	98	69.072	Amphilophus_citrinellus
ENSUMAG00000009178	APEX1	88	68.817	ENSAOCG00000009649	apex1	94	67.354	Amphiprion_ocellaris
ENSUMAG00000009178	APEX1	88	68.817	ENSAPEG00000021453	apex1	94	67.354	Amphiprion_percula
ENSUMAG00000009178	APEX1	99	66.772	ENSATEG00000002883	apex1	97	67.089	Anabas_testudineus
ENSUMAG00000009178	APEX1	100	70.186	ENSACAG00000008099	APEX1	100	70.186	Anolis_carolinensis
ENSUMAG00000009178	APEX1	100	95.597	ENSANAG00000030117	APEX1	100	95.597	Aotus_nancymaae
ENSUMAG00000009178	APEX1	87	70.652	ENSACLG00000018441	apex1	99	66.139	Astatotilapia_calliptera
ENSUMAG00000009178	APEX1	100	64.375	ENSAMXG00000034699	apex1	100	64.375	Astyanax_mexicanus
ENSUMAG00000009178	APEX1	100	96.541	ENSBTAG00000002745	APEX1	100	96.541	Bos_taurus
ENSUMAG00000009178	APEX1	80	44.922	WBGene00001372	exo-3	88	44.922	Caenorhabditis_elegans
ENSUMAG00000009178	APEX1	100	96.226	ENSCJAG00000009726	APEX1	100	96.226	Callithrix_jacchus
ENSUMAG00000009178	APEX1	100	95.912	ENSCAFG00000032033	APEX1	100	95.912	Canis_familiaris
ENSUMAG00000009178	APEX1	54	92.442	ENSCAFG00020023002	-	96	92.442	Canis_lupus_dingo
ENSUMAG00000009178	APEX1	100	95.912	ENSCAFG00020014377	-	100	95.912	Canis_lupus_dingo
ENSUMAG00000009178	APEX1	98	76.923	ENSCHIG00000014537	-	99	76.923	Capra_hircus
ENSUMAG00000009178	APEX1	100	95.912	ENSCHIG00000007298	-	100	95.912	Capra_hircus
ENSUMAG00000009178	APEX1	100	95.912	ENSTSYG00000034813	APEX1	100	95.912	Carlito_syrichta
ENSUMAG00000009178	APEX1	85	89.668	ENSCAPG00000016235	APEX1	91	98.305	Cavia_aperea
ENSUMAG00000009178	APEX1	100	96.541	ENSCPOG00000030909	APEX1	100	96.541	Cavia_porcellus
ENSUMAG00000009178	APEX1	100	82.704	ENSCCAG00000031931	-	100	82.704	Cebus_capucinus
ENSUMAG00000009178	APEX1	100	96.226	ENSCCAG00000033056	-	100	96.226	Cebus_capucinus
ENSUMAG00000009178	APEX1	100	94.969	ENSCATG00000015580	APEX1	100	94.969	Cercocebus_atys
ENSUMAG00000009178	APEX1	100	96.226	ENSCLAG00000001002	APEX1	100	96.226	Chinchilla_lanigera
ENSUMAG00000009178	APEX1	100	94.654	ENSCSAG00000016685	-	100	94.654	Chlorocebus_sabaeus
ENSUMAG00000009178	APEX1	100	94.654	ENSCSAG00000016670	-	100	94.654	Chlorocebus_sabaeus
ENSUMAG00000009178	APEX1	100	70.219	ENSCPBG00000009567	APEX1	100	70.219	Chrysemys_picta_bellii
ENSUMAG00000009178	APEX1	91	54.576	ENSCING00000008137	-	94	54.576	Ciona_intestinalis
ENSUMAG00000009178	APEX1	94	46.519	ENSCSAVG00000007144	-	100	52.510	Ciona_savignyi
ENSUMAG00000009178	APEX1	100	95.283	ENSCANG00000030726	APEX1	100	95.283	Colobus_angolensis_palliatus
ENSUMAG00000009178	APEX1	100	91.509	ENSCGRG00001017046	Apex1	100	91.509	Cricetulus_griseus_chok1gshd
ENSUMAG00000009178	APEX1	100	91.509	ENSCGRG00000008984	Apex1	100	91.509	Cricetulus_griseus_crigri
ENSUMAG00000009178	APEX1	99	63.924	ENSCSEG00000017499	apex1	99	63.924	Cynoglossus_semilaevis
ENSUMAG00000009178	APEX1	88	70.968	ENSCVAG00000022075	apex1	99	66.772	Cyprinodon_variegatus
ENSUMAG00000009178	APEX1	100	65.409	ENSDARG00000045843	apex1	100	65.723	Danio_rerio
ENSUMAG00000009178	APEX1	100	91.195	ENSDNOG00000042234	APEX1	95	91.195	Dasypus_novemcinctus
ENSUMAG00000009178	APEX1	100	96.855	ENSDORG00000001616	Apex1	100	96.855	Dipodomys_ordii
ENSUMAG00000009178	APEX1	100	94.654	ENSETEG00000004855	-	100	94.654	Echinops_telfairi
ENSUMAG00000009178	APEX1	75	64.435	ENSEBUG00000000622	-	92	64.435	Eptatretus_burgeri
ENSUMAG00000009178	APEX1	100	98.428	ENSEASG00005017489	APEX1	74	98.428	Equus_asinus_asinus
ENSUMAG00000009178	APEX1	100	98.428	ENSECAG00000022325	APEX1	82	98.428	Equus_caballus
ENSUMAG00000009178	APEX1	91	94.792	ENSEEUG00000012569	APEX1	100	94.792	Erinaceus_europaeus
ENSUMAG00000009178	APEX1	100	64.151	ENSELUG00000021706	apex1	100	65.409	Esox_lucius
ENSUMAG00000009178	APEX1	100	98.113	ENSFCAG00000030869	APEX1	100	98.113	Felis_catus
ENSUMAG00000009178	APEX1	100	95.283	ENSFDAG00000006120	APEX1	100	95.283	Fukomys_damarensis
ENSUMAG00000009178	APEX1	99	67.405	ENSFHEG00000009031	apex1	83	67.405	Fundulus_heteroclitus
ENSUMAG00000009178	APEX1	99	62.264	ENSGMOG00000007943	apex1	99	62.264	Gadus_morhua
ENSUMAG00000009178	APEX1	88	72.043	ENSGAFG00000005311	apex1	99	67.089	Gambusia_affinis
ENSUMAG00000009178	APEX1	99	64.557	ENSGACG00000019497	apex1	99	68.797	Gasterosteus_aculeatus
ENSUMAG00000009178	APEX1	100	69.906	ENSGAGG00000014999	APEX1	100	69.906	Gopherus_agassizii
ENSUMAG00000009178	APEX1	100	95.597	ENSGGOG00000002128	APEX1	100	95.597	Gorilla_gorilla
ENSUMAG00000009178	APEX1	99	65.506	ENSHBUG00000005894	apex1	99	65.823	Haplochromis_burtoni
ENSUMAG00000009178	APEX1	100	96.541	ENSHGLG00000002848	APEX1	100	96.541	Heterocephalus_glaber_female
ENSUMAG00000009178	APEX1	100	96.541	ENSHGLG00100017878	APEX1	100	96.541	Heterocephalus_glaber_male
ENSUMAG00000009178	APEX1	99	65.517	ENSHCOG00000009961	apex1	99	65.517	Hippocampus_comes
ENSUMAG00000009178	APEX1	100	67.398	ENSIPUG00000005799	apex1	100	67.398	Ictalurus_punctatus
ENSUMAG00000009178	APEX1	100	94.969	ENSSTOG00000010096	APEX1	100	94.969	Ictidomys_tridecemlineatus
ENSUMAG00000009178	APEX1	100	85.849	ENSJJAG00000003660	-	100	85.849	Jaculus_jaculus
ENSUMAG00000009178	APEX1	100	82.075	ENSJJAG00000020465	-	96	86.242	Jaculus_jaculus
ENSUMAG00000009178	APEX1	100	95.597	ENSJJAG00000012067	-	100	95.597	Jaculus_jaculus
ENSUMAG00000009178	APEX1	99	66.456	ENSKMAG00000021171	apex1	99	66.456	Kryptolebias_marmoratus
ENSUMAG00000009178	APEX1	88	67.742	ENSLBEG00000010248	apex1	99	62.975	Labrus_bergylta
ENSUMAG00000009178	APEX1	100	66.562	ENSLACG00000008617	APEX1	100	66.562	Latimeria_chalumnae
ENSUMAG00000009178	APEX1	100	65.839	ENSLOCG00000015516	apex1	99	65.839	Lepisosteus_oculatus
ENSUMAG00000009178	APEX1	100	94.340	ENSLAFG00000021872	APEX1	100	94.340	Loxodonta_africana
ENSUMAG00000009178	APEX1	100	94.969	ENSMFAG00000002565	APEX1	100	94.969	Macaca_fascicularis
ENSUMAG00000009178	APEX1	100	94.969	ENSMMUG00000048039	APEX1	100	94.969	Macaca_mulatta
ENSUMAG00000009178	APEX1	100	94.969	ENSMNEG00000036944	APEX1	100	94.969	Macaca_nemestrina
ENSUMAG00000009178	APEX1	100	94.969	ENSMLEG00000042125	APEX1	100	94.969	Mandrillus_leucophaeus
ENSUMAG00000009178	APEX1	88	70.968	ENSMAMG00000023526	apex1	99	66.456	Mastacembelus_armatus
ENSUMAG00000009178	APEX1	87	70.652	ENSMZEG00005014187	apex1	99	66.139	Maylandia_zebra
ENSUMAG00000009178	APEX1	100	92.453	ENSMAUG00000013994	Apex1	100	92.453	Mesocricetus_auratus
ENSUMAG00000009178	APEX1	100	96.855	ENSMICG00000043554	APEX1	100	96.855	Microcebus_murinus
ENSUMAG00000009178	APEX1	100	93.711	ENSMOCG00000013721	Apex1	100	93.711	Microtus_ochrogaster
ENSUMAG00000009178	APEX1	88	67.143	ENSMMOG00000010031	apex1	97	62.696	Mola_mola
ENSUMAG00000009178	APEX1	100	84.062	ENSMODG00000007125	APEX1	100	85.093	Monodelphis_domestica
ENSUMAG00000009178	APEX1	88	63.441	ENSMALG00000011699	apex1	79	62.116	Monopterus_albus
ENSUMAG00000009178	APEX1	99	94.637	MGP_CAROLIEiJ_G0019209	Apex1	99	94.637	Mus_caroli
ENSUMAG00000009178	APEX1	100	95.283	ENSMUSG00000035960	Apex1	100	95.283	Mus_musculus
ENSUMAG00000009178	APEX1	100	94.654	MGP_PahariEiJ_G0030232	Apex1	100	94.654	Mus_pahari
ENSUMAG00000009178	APEX1	100	95.283	MGP_SPRETEiJ_G0020101	Apex1	100	95.283	Mus_spretus
ENSUMAG00000009178	APEX1	100	96.875	ENSMLUG00000028957	APEX1	100	96.875	Myotis_lucifugus
ENSUMAG00000009178	APEX1	100	94.340	ENSNGAG00000002725	-	100	94.340	Nannospalax_galili
ENSUMAG00000009178	APEX1	100	70.755	ENSNGAG00000021748	-	99	70.755	Nannospalax_galili
ENSUMAG00000009178	APEX1	87	70.290	ENSNBRG00000005334	apex1	91	65.823	Neolamprologus_brichardi
ENSUMAG00000009178	APEX1	100	95.283	ENSNLEG00000010839	APEX1	100	95.283	Nomascus_leucogenys
ENSUMAG00000009178	APEX1	100	86.478	ENSMEUG00000014519	APEX1	100	86.478	Notamacropus_eugenii
ENSUMAG00000009178	APEX1	100	94.969	ENSOPRG00000014029	APEX1	100	94.969	Ochotona_princeps
ENSUMAG00000009178	APEX1	100	73.148	ENSODEG00000006583	-	100	73.148	Octodon_degus
ENSUMAG00000009178	APEX1	97	77.346	ENSODEG00000004777	-	99	77.346	Octodon_degus
ENSUMAG00000009178	APEX1	100	96.855	ENSODEG00000001703	-	100	96.855	Octodon_degus
ENSUMAG00000009178	APEX1	87	70.863	ENSONIG00000012089	apex1	99	66.456	Oreochromis_niloticus
ENSUMAG00000009178	APEX1	90	83.158	ENSOANG00000008836	APEX1	80	79.321	Ornithorhynchus_anatinus
ENSUMAG00000009178	APEX1	100	95.283	ENSOCUG00000005022	APEX1	100	95.283	Oryctolagus_cuniculus
ENSUMAG00000009178	APEX1	99	66.667	ENSORLG00000012378	apex1	99	66.667	Oryzias_latipes
ENSUMAG00000009178	APEX1	99	66.667	ENSORLG00020021371	apex1	99	66.667	Oryzias_latipes_hni
ENSUMAG00000009178	APEX1	99	66.667	ENSORLG00015020089	apex1	99	66.667	Oryzias_latipes_hsok
ENSUMAG00000009178	APEX1	99	66.352	ENSOMEG00000018876	apex1	99	66.667	Oryzias_melastigma
ENSUMAG00000009178	APEX1	100	95.597	ENSOGAG00000013335	-	100	95.597	Otolemur_garnettii
ENSUMAG00000009178	APEX1	98	84.936	ENSOGAG00000029355	-	100	84.936	Otolemur_garnettii
ENSUMAG00000009178	APEX1	100	94.969	ENSOARG00000019740	-	100	94.969	Ovis_aries
ENSUMAG00000009178	APEX1	97	92.208	ENSOARG00000001876	-	100	92.208	Ovis_aries
ENSUMAG00000009178	APEX1	99	81.329	ENSOARG00000014424	-	100	81.329	Ovis_aries
ENSUMAG00000009178	APEX1	100	95.597	ENSPPAG00000038760	APEX1	100	95.597	Pan_paniscus
ENSUMAG00000009178	APEX1	100	97.799	ENSPPRG00000011794	APEX1	100	97.799	Panthera_pardus
ENSUMAG00000009178	APEX1	100	98.113	ENSPTIG00000014829	APEX1	100	98.113	Panthera_tigris_altaica
ENSUMAG00000009178	APEX1	100	95.597	ENSPTRG00000006093	APEX1	100	95.597	Pan_troglodytes
ENSUMAG00000009178	APEX1	100	94.969	ENSPANG00000022757	APEX1	100	94.969	Papio_anubis
ENSUMAG00000009178	APEX1	87	68.592	ENSPKIG00000003504	apex1	100	64.596	Paramormyrops_kingsleyae
ENSUMAG00000009178	APEX1	76	66.667	ENSPMGG00000016596	apex1	73	66.667	Periophthalmus_magnuspinnatus
ENSUMAG00000009178	APEX1	100	94.654	ENSPEMG00000019097	Apex1	100	94.654	Peromyscus_maniculatus_bairdii
ENSUMAG00000009178	APEX1	94	65.667	ENSPMAG00000007275	-	99	65.667	Petromyzon_marinus
ENSUMAG00000009178	APEX1	100	83.699	ENSPCIG00000023274	APEX1	100	85.670	Phascolarctos_cinereus
ENSUMAG00000009178	APEX1	88	72.401	ENSPFOG00000004178	apex1	99	67.823	Poecilia_formosa
ENSUMAG00000009178	APEX1	88	72.043	ENSPLAG00000012779	apex1	99	67.823	Poecilia_latipinna
ENSUMAG00000009178	APEX1	88	72.401	ENSPMEG00000019623	apex1	99	67.823	Poecilia_mexicana
ENSUMAG00000009178	APEX1	88	71.685	ENSPREG00000014298	apex1	99	67.192	Poecilia_reticulata
ENSUMAG00000009178	APEX1	100	95.283	ENSPPYG00000005565	APEX1	100	95.283	Pongo_abelii
ENSUMAG00000009178	APEX1	100	91.824	ENSPCAG00000010376	APEX1	100	91.824	Procavia_capensis
ENSUMAG00000009178	APEX1	100	96.855	ENSPCOG00000021564	APEX1	100	96.855	Propithecus_coquereli
ENSUMAG00000009178	APEX1	100	96.250	ENSPVAG00000010736	APEX1	100	96.250	Pteropus_vampyrus
ENSUMAG00000009178	APEX1	87	70.652	ENSPNYG00000023940	apex1	99	66.139	Pundamilia_nyererei
ENSUMAG00000009178	APEX1	93	65.203	ENSPNAG00000020897	apex1	96	65.085	Pygocentrus_nattereri
ENSUMAG00000009178	APEX1	100	94.340	ENSRNOG00000009663	Apex1	100	94.340	Rattus_norvegicus
ENSUMAG00000009178	APEX1	100	94.969	ENSRBIG00000038325	APEX1	99	94.969	Rhinopithecus_bieti
ENSUMAG00000009178	APEX1	100	80.818	ENSSBOG00000031372	-	100	80.818	Saimiri_boliviensis_boliviensis
ENSUMAG00000009178	APEX1	100	95.912	ENSSBOG00000018921	-	100	95.912	Saimiri_boliviensis_boliviensis
ENSUMAG00000009178	APEX1	100	82.716	ENSSHAG00000013524	APEX1	100	83.742	Sarcophilus_harrisii
ENSUMAG00000009178	APEX1	100	61.950	ENSSFOG00015001948	apex1	100	61.950	Scleropages_formosus
ENSUMAG00000009178	APEX1	87	68.705	ENSSMAG00000013348	apex1	99	65.300	Scophthalmus_maximus
ENSUMAG00000009178	APEX1	99	64.873	ENSSDUG00000016377	apex1	99	64.873	Seriola_dumerili
ENSUMAG00000009178	APEX1	99	65.506	ENSSLDG00000023005	apex1	99	65.506	Seriola_lalandi_dorsalis
ENSUMAG00000009178	APEX1	92	70.748	ENSSPUG00000000531	APEX1	99	70.748	Sphenodon_punctatus
ENSUMAG00000009178	APEX1	88	69.534	ENSSPAG00000000458	apex1	96	68.259	Stegastes_partitus
ENSUMAG00000009178	APEX1	100	96.855	ENSSSCG00000040060	-	100	96.855	Sus_scrofa
ENSUMAG00000009178	APEX1	96	57.419	ENSSSCG00000039705	-	99	58.940	Sus_scrofa
ENSUMAG00000009178	APEX1	74	59.746	ENSTGUG00000014378	APEX1	100	59.746	Taeniopygia_guttata
ENSUMAG00000009178	APEX1	87	66.906	ENSTRUG00000004268	apex1	95	62.658	Takifugu_rubripes
ENSUMAG00000009178	APEX1	99	63.291	ENSTNIG00000005778	apex1	99	63.291	Tetraodon_nigroviridis
ENSUMAG00000009178	APEX1	100	92.138	ENSTBEG00000006405	APEX1	100	92.138	Tupaia_belangeri
ENSUMAG00000009178	APEX1	74	97.034	ENSTTRG00000007860	APEX1	100	97.034	Tursiops_truncatus
ENSUMAG00000009178	APEX1	100	100.000	ENSUAMG00000010457	APEX1	100	100.000	Ursus_americanus
ENSUMAG00000009178	APEX1	74	91.525	ENSVPAG00000005083	APEX1	100	91.525	Vicugna_pacos
ENSUMAG00000009178	APEX1	100	95.283	ENSVVUG00000009010	APEX1	100	95.283	Vulpes_vulpes
ENSUMAG00000009178	APEX1	100	63.777	ENSXETG00000024773	apex1	100	66.044	Xenopus_tropicalis
ENSUMAG00000009178	APEX1	88	72.043	ENSXCOG00000015233	apex1	99	67.405	Xiphophorus_couchianus
ENSUMAG00000009178	APEX1	93	67.752	ENSXMAG00000006195	apex1	99	67.405	Xiphophorus_maculatus