EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000009306 (Gene tree)
Gene ID: 103667155
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 225001 bases
Position: chrKK498618.1:1560199-1785199
Accession: 103667155
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000012517	EST1	PF10374.9	3.9e-15	1	1
ENSUMAP00000012517	EST1_DNA_bind	PF10373.9	2.4e-60	1	1
ENSUMAP00000012517	PIN_4	PF13638.6	2.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000014862	SMG6-201	4351	-	ENSUMAP00000012517	1380 (aa)	XP_008693495	UPI0004DFF5E4

Gene Model

Click here to download ENSUMAG00000009306's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000009306's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000009306	SMG6	100	93.357	ENSG00000070366	SMG6	100	97.456	Homo_sapiens
ENSUMAG00000009306	SMG6	85	55.292	ENSAPOG00000019448	smg6	74	55.312	Acanthochromis_polyacanthus
ENSUMAG00000009306	SMG6	100	99.130	ENSAMEG00000007632	SMG6	98	99.130	Ailuropoda_melanoleuca
ENSUMAG00000009306	SMG6	74	60.294	ENSACIG00000012997	smg6	78	55.219	Amphilophus_citrinellus
ENSUMAG00000009306	SMG6	85	55.186	ENSAOCG00000002630	smg6	74	55.078	Amphiprion_ocellaris
ENSUMAG00000009306	SMG6	85	55.344	ENSAPEG00000019101	smg6	74	55.156	Amphiprion_percula
ENSUMAG00000009306	SMG6	85	55.286	ENSATEG00000006483	smg6	73	55.418	Anabas_testudineus
ENSUMAG00000009306	SMG6	87	57.618	ENSACAG00000011783	SMG6	97	58.637	Anolis_carolinensis
ENSUMAG00000009306	SMG6	100	93.502	ENSANAG00000035760	SMG6	98	93.502	Aotus_nancymaae
ENSUMAG00000009306	SMG6	73	59.355	ENSACLG00000005288	smg6	80	55.311	Astatotilapia_calliptera
ENSUMAG00000009306	SMG6	70	63.269	ENSAMXG00000017326	smg6	98	51.059	Astyanax_mexicanus
ENSUMAG00000009306	SMG6	100	95.297	ENSBTAG00000000267	SMG6	98	95.297	Bos_taurus
ENSUMAG00000009306	SMG6	100	93.353	ENSCJAG00000001820	SMG6	98	93.353	Callithrix_jacchus
ENSUMAG00000009306	SMG6	100	97.178	ENSCAFG00000019260	SMG6	98	97.178	Canis_familiaris
ENSUMAG00000009306	SMG6	100	97.178	ENSCAFG00020009770	SMG6	98	97.178	Canis_lupus_dingo
ENSUMAG00000009306	SMG6	100	94.790	ENSCHIG00000021998	SMG6	98	94.790	Capra_hircus
ENSUMAG00000009306	SMG6	100	93.718	ENSTSYG00000003406	SMG6	100	97.652	Carlito_syrichta
ENSUMAG00000009306	SMG6	100	77.794	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
ENSUMAG00000009306	SMG6	100	91.126	ENSCPOG00000014878	SMG6	97	92.544	Cavia_porcellus
ENSUMAG00000009306	SMG6	100	93.646	ENSCCAG00000035801	SMG6	98	93.646	Cebus_capucinus
ENSUMAG00000009306	SMG6	100	93.646	ENSCATG00000031956	SMG6	98	93.646	Cercocebus_atys
ENSUMAG00000009306	SMG6	100	93.141	ENSCLAG00000006748	SMG6	99	93.141	Chinchilla_lanigera
ENSUMAG00000009306	SMG6	100	94.079	ENSCSAG00000013800	SMG6	98	94.079	Chlorocebus_sabaeus
ENSUMAG00000009306	SMG6	53	95.522	ENSCHOG00000005024	-	66	95.522	Choloepus_hoffmanni
ENSUMAG00000009306	SMG6	100	73.077	ENSCPBG00000020369	SMG6	97	73.647	Chrysemys_picta_bellii
ENSUMAG00000009306	SMG6	100	93.718	ENSCANG00000031764	SMG6	100	97.065	Colobus_angolensis_palliatus
ENSUMAG00000009306	SMG6	54	88.993	ENSCGRG00001019595	Smg6	94	88.770	Cricetulus_griseus_chok1gshd
ENSUMAG00000009306	SMG6	100	85.560	ENSCGRG00000007782	Smg6	99	85.704	Cricetulus_griseus_crigri
ENSUMAG00000009306	SMG6	88	54.273	ENSCSEG00000012757	smg6	81	53.752	Cynoglossus_semilaevis
ENSUMAG00000009306	SMG6	74	57.623	ENSCVAG00000012789	smg6	74	54.069	Cyprinodon_variegatus
ENSUMAG00000009306	SMG6	99	50.741	ENSDARG00000100481	smg6	91	51.286	Danio_rerio
ENSUMAG00000009306	SMG6	100	93.791	ENSDNOG00000048283	SMG6	98	93.791	Dasypus_novemcinctus
ENSUMAG00000009306	SMG6	100	89.576	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSUMAG00000009306	SMG6	93	100.000	ENSETEG00000016790	SMG6	91	100.000	Echinops_telfairi
ENSUMAG00000009306	SMG6	70	50.195	ENSEBUG00000005059	smg6	66	49.952	Eptatretus_burgeri
ENSUMAG00000009306	SMG6	99	96.449	ENSEASG00005009318	SMG6	97	96.449	Equus_asinus_asinus
ENSUMAG00000009306	SMG6	99	96.159	ENSECAG00000006519	SMG6	97	96.159	Equus_caballus
ENSUMAG00000009306	SMG6	100	83.841	ENSEEUG00000003493	SMG6	98	83.841	Erinaceus_europaeus
ENSUMAG00000009306	SMG6	73	60.463	ENSELUG00000005934	smg6	67	56.782	Esox_lucius
ENSUMAG00000009306	SMG6	100	97.829	ENSFCAG00000028817	SMG6	98	97.829	Felis_catus
ENSUMAG00000009306	SMG6	100	72.825	ENSFALG00000006538	SMG6	99	72.896	Ficedula_albicollis
ENSUMAG00000009306	SMG6	100	92.563	ENSFDAG00000015106	SMG6	98	92.563	Fukomys_damarensis
ENSUMAG00000009306	SMG6	85	53.157	ENSFHEG00000013282	smg6	75	53.552	Fundulus_heteroclitus
ENSUMAG00000009306	SMG6	54	69.159	ENSGMOG00000019077	smg6	58	69.159	Gadus_morhua
ENSUMAG00000009306	SMG6	100	72.534	ENSGALG00000003108	SMG6	96	72.514	Gallus_gallus
ENSUMAG00000009306	SMG6	85	53.840	ENSGAFG00000000379	smg6	74	54.082	Gambusia_affinis
ENSUMAG00000009306	SMG6	93	53.909	ENSGACG00000020521	smg6	99	53.835	Gasterosteus_aculeatus
ENSUMAG00000009306	SMG6	100	72.721	ENSGAGG00000025617	SMG6	99	73.291	Gopherus_agassizii
ENSUMAG00000009306	SMG6	100	94.296	ENSGGOG00000017156	SMG6	98	94.296	Gorilla_gorilla
ENSUMAG00000009306	SMG6	85	54.503	ENSHBUG00000021311	smg6	74	55.373	Haplochromis_burtoni
ENSUMAG00000009306	SMG6	100	92.358	ENSHGLG00000012882	SMG6	98	92.358	Heterocephalus_glaber_female
ENSUMAG00000009306	SMG6	100	92.430	ENSHGLG00100017815	SMG6	98	92.430	Heterocephalus_glaber_male
ENSUMAG00000009306	SMG6	73	59.160	ENSHCOG00000008761	smg6	97	53.896	Hippocampus_comes
ENSUMAG00000009306	SMG6	87	54.874	ENSIPUG00000012493	smg6	76	54.831	Ictalurus_punctatus
ENSUMAG00000009306	SMG6	100	94.513	ENSSTOG00000028127	SMG6	98	94.513	Ictidomys_tridecemlineatus
ENSUMAG00000009306	SMG6	78	89.319	ENSJJAG00000015367	Smg6	92	87.310	Jaculus_jaculus
ENSUMAG00000009306	SMG6	80	55.393	ENSKMAG00000000279	smg6	78	53.127	Kryptolebias_marmoratus
ENSUMAG00000009306	SMG6	56	58.634	ENSLACG00000000806	-	98	59.752	Latimeria_chalumnae
ENSUMAG00000009306	SMG6	75	65.295	ENSLOCG00000006448	smg6	99	55.301	Lepisosteus_oculatus
ENSUMAG00000009306	SMG6	100	93.357	ENSLAFG00000001261	SMG6	98	93.357	Loxodonta_africana
ENSUMAG00000009306	SMG6	100	94.152	ENSMFAG00000003394	SMG6	98	94.152	Macaca_fascicularis
ENSUMAG00000009306	SMG6	100	94.079	ENSMMUG00000023161	SMG6	98	94.079	Macaca_mulatta
ENSUMAG00000009306	SMG6	100	88.985	ENSMNEG00000044592	SMG6	98	88.985	Macaca_nemestrina
ENSUMAG00000009306	SMG6	95	97.180	ENSMLEG00000029353	SMG6	99	97.180	Mandrillus_leucophaeus
ENSUMAG00000009306	SMG6	85	55.703	ENSMAMG00000020119	smg6	79	55.869	Mastacembelus_armatus
ENSUMAG00000009306	SMG6	73	59.539	ENSMZEG00005024736	smg6	74	55.110	Maylandia_zebra
ENSUMAG00000009306	SMG6	73	67.599	ENSMGAG00000005401	-	97	67.599	Meleagris_gallopavo
ENSUMAG00000009306	SMG6	100	95.596	ENSMICG00000012913	SMG6	98	95.596	Microcebus_murinus
ENSUMAG00000009306	SMG6	85	55.117	ENSMMOG00000010883	smg6	90	51.367	Mola_mola
ENSUMAG00000009306	SMG6	100	86.816	ENSMODG00000010622	SMG6	98	86.816	Monodelphis_domestica
ENSUMAG00000009306	SMG6	85	54.844	ENSMALG00000001106	smg6	73	55.314	Monopterus_albus
ENSUMAG00000009306	SMG6	100	91.769	MGP_CAROLIEiJ_G0016729	Smg6	95	95.549	Mus_caroli
ENSUMAG00000009306	SMG6	100	91.625	ENSMUSG00000038290	Smg6	95	95.252	Mus_musculus
ENSUMAG00000009306	SMG6	100	91.618	MGP_PahariEiJ_G0017866	Smg6	95	94.955	Mus_pahari
ENSUMAG00000009306	SMG6	100	91.552	MGP_SPRETEiJ_G0017572	Smg6	95	95.549	Mus_spretus
ENSUMAG00000009306	SMG6	100	97.829	ENSMPUG00000013046	SMG6	98	97.829	Mustela_putorius_furo
ENSUMAG00000009306	SMG6	100	95.441	ENSMLUG00000005739	SMG6	98	95.441	Myotis_lucifugus
ENSUMAG00000009306	SMG6	100	91.402	ENSNGAG00000007287	Smg6	99	91.402	Nannospalax_galili
ENSUMAG00000009306	SMG6	85	53.762	ENSNBRG00000009511	smg6	81	54.481	Neolamprologus_brichardi
ENSUMAG00000009306	SMG6	100	94.079	ENSNLEG00000017171	SMG6	100	97.652	Nomascus_leucogenys
ENSUMAG00000009306	SMG6	100	82.853	ENSMEUG00000015804	SMG6	99	82.853	Notamacropus_eugenii
ENSUMAG00000009306	SMG6	64	92.760	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSUMAG00000009306	SMG6	100	85.869	ENSODEG00000008038	SMG6	97	85.869	Octodon_degus
ENSUMAG00000009306	SMG6	99	51.128	ENSONIG00000005594	smg6	97	51.882	Oreochromis_niloticus
ENSUMAG00000009306	SMG6	100	93.367	ENSOCUG00000013018	SMG6	98	93.511	Oryctolagus_cuniculus
ENSUMAG00000009306	SMG6	85	54.216	ENSORLG00000003317	smg6	74	54.867	Oryzias_latipes
ENSUMAG00000009306	SMG6	85	54.459	ENSORLG00020015343	smg6	74	54.717	Oryzias_latipes_hni
ENSUMAG00000009306	SMG6	85	54.331	ENSORLG00015020454	smg6	74	54.980	Oryzias_latipes_hsok
ENSUMAG00000009306	SMG6	85	53.549	ENSOMEG00000010838	smg6	75	53.980	Oryzias_melastigma
ENSUMAG00000009306	SMG6	100	94.372	ENSOGAG00000004483	SMG6	98	94.372	Otolemur_garnettii
ENSUMAG00000009306	SMG6	100	94.718	ENSOARG00000015076	SMG6	100	94.718	Ovis_aries
ENSUMAG00000009306	SMG6	100	94.152	ENSPPAG00000043296	SMG6	98	94.152	Pan_paniscus
ENSUMAG00000009306	SMG6	100	97.902	ENSPPRG00000014581	SMG6	98	97.902	Panthera_pardus
ENSUMAG00000009306	SMG6	100	97.902	ENSPTIG00000008925	SMG6	100	99.413	Panthera_tigris_altaica
ENSUMAG00000009306	SMG6	100	94.079	ENSPTRG00000008544	SMG6	100	97.456	Pan_troglodytes
ENSUMAG00000009306	SMG6	100	93.935	ENSPANG00000024588	SMG6	98	93.935	Papio_anubis
ENSUMAG00000009306	SMG6	90	71.226	ENSPSIG00000006660	SMG6	96	71.305	Pelodiscus_sinensis
ENSUMAG00000009306	SMG6	99	50.101	ENSPMGG00000000844	smg6	98	60.614	Periophthalmus_magnuspinnatus
ENSUMAG00000009306	SMG6	100	92.708	ENSPEMG00000020707	Smg6	97	93.805	Peromyscus_maniculatus_bairdii
ENSUMAG00000009306	SMG6	99	52.132	ENSPFOG00000012035	smg6	97	51.786	Poecilia_formosa
ENSUMAG00000009306	SMG6	85	54.203	ENSPREG00000010066	smg6	74	54.160	Poecilia_reticulata
ENSUMAG00000009306	SMG6	100	88.833	ENSPPYG00000007790	SMG6	98	88.833	Pongo_abelii
ENSUMAG00000009306	SMG6	100	89.025	ENSPCAG00000000552	SMG6	98	89.025	Procavia_capensis
ENSUMAG00000009306	SMG6	100	95.018	ENSPCOG00000020925	SMG6	98	95.018	Propithecus_coquereli
ENSUMAG00000009306	SMG6	86	91.912	ENSPVAG00000002159	SMG6	84	91.912	Pteropus_vampyrus
ENSUMAG00000009306	SMG6	73	61.877	ENSPNYG00000024151	smg6	79	56.981	Pundamilia_nyererei
ENSUMAG00000009306	SMG6	89	51.398	ENSPNAG00000015480	smg6	88	63.016	Pygocentrus_nattereri
ENSUMAG00000009306	SMG6	100	92.058	ENSRNOG00000003041	Smg6	95	96.142	Rattus_norvegicus
ENSUMAG00000009306	SMG6	100	93.718	ENSRBIG00000024746	SMG6	98	93.718	Rhinopithecus_bieti
ENSUMAG00000009306	SMG6	100	93.791	ENSRROG00000030423	SMG6	100	96.673	Rhinopithecus_roxellana
ENSUMAG00000009306	SMG6	100	93.502	ENSSBOG00000022518	SMG6	98	91.769	Saimiri_boliviensis_boliviensis
ENSUMAG00000009306	SMG6	100	86.383	ENSSHAG00000010045	SMG6	98	86.383	Sarcophilus_harrisii
ENSUMAG00000009306	SMG6	74	62.698	ENSSFOG00015005436	smg6	70	57.683	Scleropages_formosus
ENSUMAG00000009306	SMG6	85	55.486	ENSSMAG00000019777	smg6	73	54.957	Scophthalmus_maximus
ENSUMAG00000009306	SMG6	91	52.984	ENSSDUG00000016412	smg6	80	52.928	Seriola_dumerili
ENSUMAG00000009306	SMG6	88	52.105	ENSSLDG00000020747	smg6	83	51.982	Seriola_lalandi_dorsalis
ENSUMAG00000009306	SMG6	99	71.051	ENSSPUG00000007152	SMG6	98	70.979	Sphenodon_punctatus
ENSUMAG00000009306	SMG6	73	59.012	ENSSPAG00000015633	smg6	74	54.965	Stegastes_partitus
ENSUMAG00000009306	SMG6	100	95.228	ENSSSCG00000017826	SMG6	99	94.973	Sus_scrofa
ENSUMAG00000009306	SMG6	100	73.199	ENSTGUG00000005836	SMG6	98	73.271	Taeniopygia_guttata
ENSUMAG00000009306	SMG6	85	55.044	ENSTRUG00000000358	smg6	81	55.297	Takifugu_rubripes
ENSUMAG00000009306	SMG6	99	50.579	ENSTNIG00000016164	smg6	97	50.645	Tetraodon_nigroviridis
ENSUMAG00000009306	SMG6	100	89.386	ENSTBEG00000011424	SMG6	98	89.386	Tupaia_belangeri
ENSUMAG00000009306	SMG6	91	92.576	ENSTTRG00000001175	SMG6	89	92.576	Tursiops_truncatus
ENSUMAG00000009306	SMG6	100	99.566	ENSUAMG00000025152	SMG6	100	99.566	Ursus_americanus
ENSUMAG00000009306	SMG6	84	100.000	ENSVPAG00000000225	SMG6	85	100.000	Vicugna_pacos
ENSUMAG00000009306	SMG6	100	97.033	ENSVVUG00000021727	SMG6	98	97.033	Vulpes_vulpes
ENSUMAG00000009306	SMG6	100	59.448	ENSXETG00000023799	SMG6	99	59.406	Xenopus_tropicalis
ENSUMAG00000009306	SMG6	85	54.976	ENSXCOG00000009867	smg6	74	54.996	Xiphophorus_couchianus
ENSUMAG00000009306	SMG6	85	54.467	ENSXMAG00000010321	smg6	74	53.991	Xiphophorus_maculatus