EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000009474 (Gene tree)
Gene ID: 103669986
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 13754 bases
Position: chrKK498641.1:6194742-6208495
Accession: 103669986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000012770	zf-CCCH	PF00642.24	2e-20	1	2
ENSUMAP00000012770	zf-CCCH	PF00642.24	2e-20	2	2
ENSUMAP00000012770	zf-CCHC	PF00098.23	4.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000015152	CPSF4-201	1737	-	ENSUMAP00000012770	243 (aa)	XP_008696586	UPI00001F3457

Gene Model

Click here to download ENSUMAG00000009474's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03015	mRNA surveillance pathway	KEGG
umr05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000009474's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000009474	CPSF4	56	67.407	ENSUMAG00000007869	CPSF4L	86	67.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000009474	CPSF4	100	98.770	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSUMAG00000009474	CPSF4	64	70.056	ENSAPOG00000004921	cpsf4	100	70.056	Acanthochromis_polyacanthus
ENSUMAG00000009474	CPSF4	100	90.335	ENSAMEG00000006252	CPSF4	100	90.335	Ailuropoda_melanoleuca
ENSUMAG00000009474	CPSF4	100	87.243	ENSACIG00000009248	cpsf4	100	87.243	Amphilophus_citrinellus
ENSUMAG00000009474	CPSF4	100	81.887	ENSAOCG00000019616	cpsf4	100	81.887	Amphiprion_ocellaris
ENSUMAG00000009474	CPSF4	100	81.887	ENSAPEG00000011679	cpsf4	100	81.887	Amphiprion_percula
ENSUMAG00000009474	CPSF4	100	84.800	ENSATEG00000007010	cpsf4	100	85.425	Anabas_testudineus
ENSUMAG00000009474	CPSF4	100	82.900	ENSACAG00000012941	CPSF4	89	82.156	Anolis_carolinensis
ENSUMAG00000009474	CPSF4	100	89.591	ENSANAG00000021360	CPSF4	100	89.591	Aotus_nancymaae
ENSUMAG00000009474	CPSF4	100	80.658	ENSACLG00000010374	cpsf4	100	79.623	Astatotilapia_calliptera
ENSUMAG00000009474	CPSF4	100	80.000	ENSAMXG00000031647	cpsf4	100	80.370	Astyanax_mexicanus
ENSUMAG00000009474	CPSF4	100	99.177	ENSBTAG00000002090	CPSF4	100	99.177	Bos_taurus
ENSUMAG00000009474	CPSF4	100	89.591	ENSCJAG00000015826	CPSF4	100	89.591	Callithrix_jacchus
ENSUMAG00000009474	CPSF4	100	89.963	ENSCAFG00000015036	CPSF4	100	89.963	Canis_familiaris
ENSUMAG00000009474	CPSF4	100	81.041	ENSCAFG00020014462	CPSF4	100	83.643	Canis_lupus_dingo
ENSUMAG00000009474	CPSF4	100	89.591	ENSCHIG00000014313	CPSF4	100	89.591	Capra_hircus
ENSUMAG00000009474	CPSF4	100	98.770	ENSTSYG00000005712	-	100	98.770	Carlito_syrichta
ENSUMAG00000009474	CPSF4	100	90.204	ENSTSYG00000014604	-	100	90.204	Carlito_syrichta
ENSUMAG00000009474	CPSF4	88	92.130	ENSTSYG00000008195	-	99	91.556	Carlito_syrichta
ENSUMAG00000009474	CPSF4	79	88.073	ENSCAPG00000013881	CPSF4	87	88.073	Cavia_aperea
ENSUMAG00000009474	CPSF4	100	99.590	ENSCPOG00000001783	CPSF4	100	99.590	Cavia_porcellus
ENSUMAG00000009474	CPSF4	100	89.591	ENSCCAG00000028291	CPSF4	100	89.591	Cebus_capucinus
ENSUMAG00000009474	CPSF4	100	91.770	ENSCATG00000038440	CPSF4	100	89.591	Cercocebus_atys
ENSUMAG00000009474	CPSF4	100	89.963	ENSCLAG00000007050	CPSF4	100	89.963	Chinchilla_lanigera
ENSUMAG00000009474	CPSF4	100	89.591	ENSCSAG00000017795	CPSF4	100	89.591	Chlorocebus_sabaeus
ENSUMAG00000009474	CPSF4	78	81.481	ENSCPBG00000020869	CPSF4	100	80.556	Chrysemys_picta_bellii
ENSUMAG00000009474	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSUMAG00000009474	CPSF4	96	55.906	ENSCING00000021080	-	97	55.906	Ciona_intestinalis
ENSUMAG00000009474	CPSF4	96	52.632	ENSCSAVG00000011469	-	97	51.246	Ciona_savignyi
ENSUMAG00000009474	CPSF4	100	90.947	ENSCANG00000019384	CPSF4	100	89.591	Colobus_angolensis_palliatus
ENSUMAG00000009474	CPSF4	100	99.590	ENSCGRG00001024184	Cpsf4	100	99.590	Cricetulus_griseus_chok1gshd
ENSUMAG00000009474	CPSF4	100	90.335	ENSCGRG00000013892	Cpsf4	100	90.335	Cricetulus_griseus_crigri
ENSUMAG00000009474	CPSF4	100	80.000	ENSCSEG00000019055	cpsf4	100	80.000	Cynoglossus_semilaevis
ENSUMAG00000009474	CPSF4	100	80.000	ENSCVAG00000016528	cpsf4	100	80.000	Cyprinodon_variegatus
ENSUMAG00000009474	CPSF4	100	78.967	ENSDARG00000020217	cpsf4	100	79.336	Danio_rerio
ENSUMAG00000009474	CPSF4	100	89.963	ENSDNOG00000006344	CPSF4	100	89.963	Dasypus_novemcinctus
ENSUMAG00000009474	CPSF4	79	87.558	ENSDORG00000000742	Cpsf4	100	87.558	Dipodomys_ordii
ENSUMAG00000009474	CPSF4	100	52.740	FBgn0015621	Clp	99	53.082	Drosophila_melanogaster
ENSUMAG00000009474	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSUMAG00000009474	CPSF4	99	71.429	ENSEBUG00000012552	cpsf4	98	70.445	Eptatretus_burgeri
ENSUMAG00000009474	CPSF4	100	99.590	ENSEASG00005002487	CPSF4	100	99.590	Equus_asinus_asinus
ENSUMAG00000009474	CPSF4	100	90.335	ENSECAG00000007525	CPSF4	100	90.335	Equus_caballus
ENSUMAG00000009474	CPSF4	59	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSUMAG00000009474	CPSF4	100	78.309	ENSELUG00000011481	cpsf4	100	78.309	Esox_lucius
ENSUMAG00000009474	CPSF4	100	90.335	ENSFCAG00000015070	CPSF4	100	90.335	Felis_catus
ENSUMAG00000009474	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSUMAG00000009474	CPSF4	100	95.062	ENSFALG00000013799	CPSF4	100	95.062	Ficedula_albicollis
ENSUMAG00000009474	CPSF4	89	88.477	ENSFDAG00000014092	CPSF4	100	88.477	Fukomys_damarensis
ENSUMAG00000009474	CPSF4	100	80.377	ENSFHEG00000010880	cpsf4	100	80.377	Fundulus_heteroclitus
ENSUMAG00000009474	CPSF4	100	80.233	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSUMAG00000009474	CPSF4	100	95.062	ENSGALG00000004714	CPSF4	100	95.062	Gallus_gallus
ENSUMAG00000009474	CPSF4	65	39.888	ENSGALG00000004441	-	98	39.326	Gallus_gallus
ENSUMAG00000009474	CPSF4	100	79.545	ENSGAFG00000010580	cpsf4	100	79.924	Gambusia_affinis
ENSUMAG00000009474	CPSF4	100	81.890	ENSGACG00000007792	cpsf4	100	81.890	Gasterosteus_aculeatus
ENSUMAG00000009474	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSUMAG00000009474	CPSF4	100	84.387	ENSGAGG00000021835	CPSF4	100	83.643	Gopherus_agassizii
ENSUMAG00000009474	CPSF4	100	89.591	ENSGGOG00000015131	CPSF4	100	89.591	Gorilla_gorilla
ENSUMAG00000009474	CPSF4	100	79.623	ENSHBUG00000013699	cpsf4	100	79.623	Haplochromis_burtoni
ENSUMAG00000009474	CPSF4	100	89.299	ENSHGLG00000017150	CPSF4	100	89.299	Heterocephalus_glaber_female
ENSUMAG00000009474	CPSF4	86	82.627	ENSHGLG00100009215	-	100	82.212	Heterocephalus_glaber_male
ENSUMAG00000009474	CPSF4	100	62.140	ENSHGLG00100017302	-	100	60.082	Heterocephalus_glaber_male
ENSUMAG00000009474	CPSF4	100	79.623	ENSHCOG00000004397	cpsf4	100	79.623	Hippocampus_comes
ENSUMAG00000009474	CPSF4	100	78.598	ENSIPUG00000017147	cpsf4	100	79.336	Ictalurus_punctatus
ENSUMAG00000009474	CPSF4	100	100.000	ENSSTOG00000001688	CPSF4	100	100.000	Ictidomys_tridecemlineatus
ENSUMAG00000009474	CPSF4	100	89.963	ENSJJAG00000019426	Cpsf4	100	89.963	Jaculus_jaculus
ENSUMAG00000009474	CPSF4	100	79.245	ENSKMAG00000015642	cpsf4	100	79.245	Kryptolebias_marmoratus
ENSUMAG00000009474	CPSF4	100	82.593	ENSLACG00000010938	CPSF4	100	82.593	Latimeria_chalumnae
ENSUMAG00000009474	CPSF4	100	64.898	ENSLACG00000018470	-	100	63.672	Latimeria_chalumnae
ENSUMAG00000009474	CPSF4	100	81.413	ENSLOCG00000004814	cpsf4	100	81.041	Lepisosteus_oculatus
ENSUMAG00000009474	CPSF4	100	89.963	ENSLAFG00000000159	CPSF4	100	89.963	Loxodonta_africana
ENSUMAG00000009474	CPSF4	100	90.947	ENSMFAG00000001462	CPSF4	100	98.429	Macaca_fascicularis
ENSUMAG00000009474	CPSF4	100	89.591	ENSMMUG00000019191	CPSF4	100	89.591	Macaca_mulatta
ENSUMAG00000009474	CPSF4	100	90.947	ENSMNEG00000032306	CPSF4	100	89.591	Macaca_nemestrina
ENSUMAG00000009474	CPSF4	100	91.770	ENSMLEG00000034721	CPSF4	100	89.591	Mandrillus_leucophaeus
ENSUMAG00000009474	CPSF4	100	80.899	ENSMAMG00000006244	cpsf4	100	80.899	Mastacembelus_armatus
ENSUMAG00000009474	CPSF4	100	79.623	ENSMZEG00005007515	cpsf4	100	79.623	Maylandia_zebra
ENSUMAG00000009474	CPSF4	86	94.737	ENSMGAG00000004235	CPSF4	100	94.737	Meleagris_gallopavo
ENSUMAG00000009474	CPSF4	100	90.335	ENSMAUG00000021253	Cpsf4	100	90.335	Mesocricetus_auratus
ENSUMAG00000009474	CPSF4	100	89.591	ENSMICG00000017429	CPSF4	100	89.591	Microcebus_murinus
ENSUMAG00000009474	CPSF4	100	90.335	ENSMOCG00000014901	Cpsf4	100	90.335	Microtus_ochrogaster
ENSUMAG00000009474	CPSF4	100	80.827	ENSMMOG00000001813	cpsf4	95	87.879	Mola_mola
ENSUMAG00000009474	CPSF4	100	87.732	ENSMODG00000001367	CPSF4	100	87.732	Monodelphis_domestica
ENSUMAG00000009474	CPSF4	100	80.899	ENSMALG00000012611	cpsf4	100	80.899	Monopterus_albus
ENSUMAG00000009474	CPSF4	100	100.000	MGP_CAROLIEiJ_G0028012	Cpsf4	100	100.000	Mus_caroli
ENSUMAG00000009474	CPSF4	100	100.000	ENSMUSG00000029625	Cpsf4	100	100.000	Mus_musculus
ENSUMAG00000009474	CPSF4	100	100.000	MGP_PahariEiJ_G0024581	Cpsf4	100	100.000	Mus_pahari
ENSUMAG00000009474	CPSF4	100	99.588	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.588	Mus_spretus
ENSUMAG00000009474	CPSF4	100	90.335	ENSMPUG00000016508	CPSF4	100	90.335	Mustela_putorius_furo
ENSUMAG00000009474	CPSF4	86	99.043	ENSMLUG00000010980	CPSF4	100	99.043	Myotis_lucifugus
ENSUMAG00000009474	CPSF4	100	89.963	ENSNGAG00000001567	Cpsf4	100	89.963	Nannospalax_galili
ENSUMAG00000009474	CPSF4	90	78.838	ENSNBRG00000003943	cpsf4	98	78.838	Neolamprologus_brichardi
ENSUMAG00000009474	CPSF4	100	98.770	ENSNLEG00000011074	CPSF4	100	98.770	Nomascus_leucogenys
ENSUMAG00000009474	CPSF4	100	87.732	ENSMEUG00000006955	CPSF4	100	87.732	Notamacropus_eugenii
ENSUMAG00000009474	CPSF4	100	89.591	ENSOPRG00000013663	CPSF4	100	89.591	Ochotona_princeps
ENSUMAG00000009474	CPSF4	98	84.167	ENSODEG00000018283	-	91	84.167	Octodon_degus
ENSUMAG00000009474	CPSF4	100	73.180	ENSODEG00000009779	-	100	73.180	Octodon_degus
ENSUMAG00000009474	CPSF4	100	90.335	ENSODEG00000011181	-	100	90.335	Octodon_degus
ENSUMAG00000009474	CPSF4	100	79.623	ENSONIG00000008495	cpsf4	100	79.623	Oreochromis_niloticus
ENSUMAG00000009474	CPSF4	86	85.470	ENSOANG00000007729	CPSF4	100	82.906	Ornithorhynchus_anatinus
ENSUMAG00000009474	CPSF4	100	53.957	ENSOANG00000009568	-	100	52.158	Ornithorhynchus_anatinus
ENSUMAG00000009474	CPSF4	100	89.591	ENSOCUG00000002437	CPSF4	70	89.591	Oryctolagus_cuniculus
ENSUMAG00000009474	CPSF4	100	80.000	ENSORLG00000022798	cpsf4	100	81.132	Oryzias_latipes
ENSUMAG00000009474	CPSF4	100	80.000	ENSORLG00020008548	cpsf4	100	81.132	Oryzias_latipes_hni
ENSUMAG00000009474	CPSF4	100	79.623	ENSORLG00015019575	cpsf4	100	80.755	Oryzias_latipes_hsok
ENSUMAG00000009474	CPSF4	100	78.868	ENSOMEG00000005176	cpsf4	100	80.000	Oryzias_melastigma
ENSUMAG00000009474	CPSF4	100	89.963	ENSOGAG00000010884	CPSF4	100	89.963	Otolemur_garnettii
ENSUMAG00000009474	CPSF4	100	78.022	ENSOARG00000018668	CPSF4	100	76.923	Ovis_aries
ENSUMAG00000009474	CPSF4	100	89.219	ENSPPAG00000043355	CPSF4	100	89.219	Pan_paniscus
ENSUMAG00000009474	CPSF4	100	90.335	ENSPPRG00000003134	CPSF4	100	90.335	Panthera_pardus
ENSUMAG00000009474	CPSF4	89	88.843	ENSPTIG00000005604	CPSF4	90	88.843	Panthera_tigris_altaica
ENSUMAG00000009474	CPSF4	100	89.219	ENSPTRG00000019453	CPSF4	100	89.219	Pan_troglodytes
ENSUMAG00000009474	CPSF4	100	90.947	ENSPANG00000023123	CPSF4	100	89.591	Papio_anubis
ENSUMAG00000009474	CPSF4	100	79.927	ENSPKIG00000014278	cpsf4	100	79.927	Paramormyrops_kingsleyae
ENSUMAG00000009474	CPSF4	78	81.019	ENSPSIG00000011229	CPSF4	100	80.093	Pelodiscus_sinensis
ENSUMAG00000009474	CPSF4	79	66.321	ENSPSIG00000018198	-	100	66.321	Pelodiscus_sinensis
ENSUMAG00000009474	CPSF4	100	81.481	ENSPMGG00000017735	cpsf4	100	77.959	Periophthalmus_magnuspinnatus
ENSUMAG00000009474	CPSF4	100	90.335	ENSPEMG00000004508	Cpsf4	100	90.335	Peromyscus_maniculatus_bairdii
ENSUMAG00000009474	CPSF4	100	87.732	ENSPCIG00000024776	CPSF4	100	87.732	Phascolarctos_cinereus
ENSUMAG00000009474	CPSF4	100	79.545	ENSPFOG00000014912	cpsf4	100	79.924	Poecilia_formosa
ENSUMAG00000009474	CPSF4	100	78.862	ENSPLAG00000009599	cpsf4	100	78.862	Poecilia_latipinna
ENSUMAG00000009474	CPSF4	100	79.545	ENSPMEG00000009790	cpsf4	100	79.924	Poecilia_mexicana
ENSUMAG00000009474	CPSF4	100	78.788	ENSPREG00000018166	cpsf4	100	75.954	Poecilia_reticulata
ENSUMAG00000009474	CPSF4	86	87.179	ENSPPYG00000017378	CPSF4	100	87.179	Pongo_abelii
ENSUMAG00000009474	CPSF4	100	89.219	ENSPCAG00000001892	CPSF4	100	89.219	Procavia_capensis
ENSUMAG00000009474	CPSF4	100	89.963	ENSPCOG00000012771	CPSF4	100	89.963	Propithecus_coquereli
ENSUMAG00000009474	CPSF4	100	83.643	ENSPVAG00000007531	CPSF4	100	83.643	Pteropus_vampyrus
ENSUMAG00000009474	CPSF4	100	79.623	ENSPNYG00000018559	cpsf4	100	79.623	Pundamilia_nyererei
ENSUMAG00000009474	CPSF4	100	81.111	ENSPNAG00000003736	cpsf4	100	81.481	Pygocentrus_nattereri
ENSUMAG00000009474	CPSF4	100	100.000	ENSRNOG00000000985	Cpsf4	100	100.000	Rattus_norvegicus
ENSUMAG00000009474	CPSF4	86	88.034	ENSRBIG00000033886	CPSF4	100	88.034	Rhinopithecus_bieti
ENSUMAG00000009474	CPSF4	100	98.770	ENSRROG00000040431	CPSF4	100	98.770	Rhinopithecus_roxellana
ENSUMAG00000009474	CPSF4	100	89.591	ENSSBOG00000020493	CPSF4	100	98.429	Saimiri_boliviensis_boliviensis
ENSUMAG00000009474	CPSF4	100	87.732	ENSSHAG00000011533	CPSF4	100	87.732	Sarcophilus_harrisii
ENSUMAG00000009474	CPSF4	100	81.159	ENSSFOG00015007883	cpsf4	100	81.159	Scleropages_formosus
ENSUMAG00000009474	CPSF4	100	86.531	ENSSMAG00000006374	cpsf4	100	86.531	Scophthalmus_maximus
ENSUMAG00000009474	CPSF4	100	81.203	ENSSDUG00000018887	cpsf4	100	81.203	Seriola_dumerili
ENSUMAG00000009474	CPSF4	100	81.203	ENSSLDG00000019078	cpsf4	100	81.203	Seriola_lalandi_dorsalis
ENSUMAG00000009474	CPSF4	86	88.462	ENSSARG00000012416	CPSF4	100	88.462	Sorex_araneus
ENSUMAG00000009474	CPSF4	100	85.130	ENSSPUG00000003549	CPSF4	100	83.271	Sphenodon_punctatus
ENSUMAG00000009474	CPSF4	95	64.831	ENSSPUG00000014803	-	97	64.407	Sphenodon_punctatus
ENSUMAG00000009474	CPSF4	100	87.654	ENSSPAG00000006174	cpsf4	100	87.654	Stegastes_partitus
ENSUMAG00000009474	CPSF4	100	99.180	ENSSSCG00000026896	CPSF4	100	99.180	Sus_scrofa
ENSUMAG00000009474	CPSF4	100	93.878	ENSTGUG00000007552	CPSF4	100	93.878	Taeniopygia_guttata
ENSUMAG00000009474	CPSF4	100	79.468	ENSTRUG00000024220	cpsf4	100	79.468	Takifugu_rubripes
ENSUMAG00000009474	CPSF4	100	79.087	ENSTNIG00000006265	cpsf4	100	79.848	Tetraodon_nigroviridis
ENSUMAG00000009474	CPSF4	86	76.496	ENSTBEG00000011406	CPSF4	100	75.641	Tupaia_belangeri
ENSUMAG00000009474	CPSF4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSUMAG00000009474	CPSF4	91	100.000	ENSUAMG00000008051	CPSF4	85	100.000	Ursus_americanus
ENSUMAG00000009474	CPSF4	100	99.180	ENSVVUG00000008824	CPSF4	100	99.180	Vulpes_vulpes
ENSUMAG00000009474	CPSF4	100	79.570	ENSXETG00000009892	cpsf4	100	81.004	Xenopus_tropicalis
ENSUMAG00000009474	CPSF4	99	61.278	ENSXETG00000004641	cpsf4l	99	60.150	Xenopus_tropicalis
ENSUMAG00000009474	CPSF4	100	79.167	ENSXCOG00000016040	cpsf4	100	79.545	Xiphophorus_couchianus
ENSUMAG00000009474	CPSF4	100	79.545	ENSXMAG00000024670	cpsf4	100	79.924	Xiphophorus_maculatus