EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000011162 (Gene tree)
Gene ID: 103661913
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 48967 bases
Position: chrKK498582.1:12423331-12472297
Accession: 24086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000015187	DND1_DSRM	PF14709.7	1.8e-24	1	1
ENSUMAP00000015182	DND1_DSRM	PF14709.7	1.8e-24	1	1
ENSUMAP00000015187	RRM_1	PF00076.22	1.9e-39	1	3
ENSUMAP00000015187	RRM_1	PF00076.22	1.9e-39	2	3
ENSUMAP00000015187	RRM_1	PF00076.22	1.9e-39	3	3
ENSUMAP00000015182	RRM_1	PF00076.22	2e-39	1	3
ENSUMAP00000015182	RRM_1	PF00076.22	2e-39	2	3
ENSUMAP00000015182	RRM_1	PF00076.22	2e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000017979	A1CF-201	1773	-	ENSUMAP00000015182	590 (aa)	-	-
ENSUMAT00000017984	A1CF-202	1719	-	ENSUMAP00000015187	572 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000011162's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000011162's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000011162	A1CF	52	51.780	ENSUMAG00000020178	SYNCRIP	57	50.769
ENSUMAG00000011162	A1CF	68	71.000	ENSUMAG00000016442	RBM46	82	71.000
ENSUMAG00000011162	A1CF	53	51.266	ENSUMAG00000013292	HNRNPR	50	51.266

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000011162	A1CF	100	95.118	ENSG00000148584	A1CF	100	96.517	Homo_sapiens
ENSUMAG00000011162	A1CF	100	72.712	ENSAPOG00000008259	a1cf	100	72.712	Acanthochromis_polyacanthus
ENSUMAG00000011162	A1CF	100	99.324	ENSAMEG00000000523	A1CF	100	99.324	Ailuropoda_melanoleuca
ENSUMAG00000011162	A1CF	100	74.878	ENSACIG00000008632	a1cf	100	76.183	Amphilophus_citrinellus
ENSUMAG00000011162	A1CF	100	73.235	ENSAOCG00000023744	a1cf	96	83.478	Amphiprion_ocellaris
ENSUMAG00000011162	A1CF	100	74.220	ENSAPEG00000009537	a1cf	100	75.041	Amphiprion_percula
ENSUMAG00000011162	A1CF	100	74.756	ENSATEG00000013720	a1cf	100	76.059	Anabas_testudineus
ENSUMAG00000011162	A1CF	100	88.494	ENSAPLG00000002964	A1CF	100	88.325	Anas_platyrhynchos
ENSUMAG00000011162	A1CF	100	83.080	ENSACAG00000015269	A1CF	100	82.741	Anolis_carolinensis
ENSUMAG00000011162	A1CF	100	94.108	ENSANAG00000019974	A1CF	100	93.939	Aotus_nancymaae
ENSUMAG00000011162	A1CF	100	73.147	ENSACLG00000017428	a1cf	100	74.794	Astatotilapia_calliptera
ENSUMAG00000011162	A1CF	100	73.884	ENSAMXG00000018180	a1cf	100	73.884	Astyanax_mexicanus
ENSUMAG00000011162	A1CF	100	93.613	ENSBTAG00000021195	A1CF	100	93.613	Bos_taurus
ENSUMAG00000011162	A1CF	100	95.791	ENSCJAG00000005045	A1CF	100	95.623	Callithrix_jacchus
ENSUMAG00000011162	A1CF	100	97.462	ENSCAFG00000015581	A1CF	100	97.462	Canis_familiaris
ENSUMAG00000011162	A1CF	100	97.462	ENSCAFG00020026421	A1CF	100	97.462	Canis_lupus_dingo
ENSUMAG00000011162	A1CF	100	94.454	ENSCHIG00000020411	A1CF	100	94.454	Capra_hircus
ENSUMAG00000011162	A1CF	99	92.644	ENSTSYG00000001755	A1CF	100	93.202	Carlito_syrichta
ENSUMAG00000011162	A1CF	100	80.982	ENSCAPG00000017386	A1CF	90	91.903	Cavia_aperea
ENSUMAG00000011162	A1CF	100	94.108	ENSCPOG00000009807	A1CF	100	94.108	Cavia_porcellus
ENSUMAG00000011162	A1CF	100	95.616	ENSCCAG00000018168	A1CF	100	95.447	Cebus_capucinus
ENSUMAG00000011162	A1CF	100	94.088	ENSCATG00000043715	A1CF	100	94.088	Cercocebus_atys
ENSUMAG00000011162	A1CF	100	93.792	ENSCLAG00000010424	A1CF	100	93.456	Chinchilla_lanigera
ENSUMAG00000011162	A1CF	100	95.270	ENSCSAG00000007032	A1CF	100	95.270	Chlorocebus_sabaeus
ENSUMAG00000011162	A1CF	98	92.077	ENSCHOG00000009089	A1CF	98	89.153	Choloepus_hoffmanni
ENSUMAG00000011162	A1CF	100	88.156	ENSCPBG00000026464	A1CF	100	87.817	Chrysemys_picta_bellii
ENSUMAG00000011162	A1CF	100	95.439	ENSCANG00000038032	A1CF	100	95.439	Colobus_angolensis_palliatus
ENSUMAG00000011162	A1CF	100	92.605	ENSCGRG00001017413	A1cf	100	92.605	Cricetulus_griseus_chok1gshd
ENSUMAG00000011162	A1CF	100	91.765	ENSCGRG00000017332	A1cf	100	92.773	Cricetulus_griseus_crigri
ENSUMAG00000011162	A1CF	100	74.461	ENSCSEG00000002361	a1cf	100	75.788	Cynoglossus_semilaevis
ENSUMAG00000011162	A1CF	100	73.941	ENSCVAG00000010520	a1cf	100	75.407	Cyprinodon_variegatus
ENSUMAG00000011162	A1CF	100	77.926	ENSDARG00000002968	a1cf	100	79.264	Danio_rerio
ENSUMAG00000011162	A1CF	100	94.118	ENSDNOG00000002829	A1CF	100	94.118	Dasypus_novemcinctus
ENSUMAG00000011162	A1CF	80	95.703	ENSETEG00000012527	A1CF	78	95.703	Echinops_telfairi
ENSUMAG00000011162	A1CF	100	95.980	ENSEASG00005012924	A1CF	100	95.980	Equus_asinus_asinus
ENSUMAG00000011162	A1CF	100	95.645	ENSECAG00000010424	A1CF	100	95.645	Equus_caballus
ENSUMAG00000011162	A1CF	81	80.043	ENSEEUG00000000013	A1CF	97	81.333	Erinaceus_europaeus
ENSUMAG00000011162	A1CF	100	78.523	ENSELUG00000003159	a1cf	100	79.362	Esox_lucius
ENSUMAG00000011162	A1CF	100	94.426	ENSFCAG00000011179	A1CF	100	94.595	Felis_catus
ENSUMAG00000011162	A1CF	100	86.125	ENSFALG00000013183	A1CF	100	85.787	Ficedula_albicollis
ENSUMAG00000011162	A1CF	100	91.933	ENSFDAG00000019371	A1CF	100	91.765	Fukomys_damarensis
ENSUMAG00000011162	A1CF	100	69.381	ENSFHEG00000019652	a1cf	96	81.250	Fundulus_heteroclitus
ENSUMAG00000011162	A1CF	100	71.570	ENSGMOG00000018943	a1cf	100	71.405	Gadus_morhua
ENSUMAG00000011162	A1CF	99	86.995	ENSGALG00000003765	A1CF	97	87.857	Gallus_gallus
ENSUMAG00000011162	A1CF	100	69.243	ENSGAFG00000014868	a1cf	100	70.230	Gambusia_affinis
ENSUMAG00000011162	A1CF	100	73.355	ENSGACG00000010241	a1cf	100	73.849	Gasterosteus_aculeatus
ENSUMAG00000011162	A1CF	99	87.102	ENSGAGG00000016508	A1CF	98	86.749	Gopherus_agassizii
ENSUMAG00000011162	A1CF	100	95.286	ENSGGOG00000009670	A1CF	100	95.118	Gorilla_gorilla
ENSUMAG00000011162	A1CF	100	73.573	ENSHBUG00000021959	a1cf	100	75.530	Haplochromis_burtoni
ENSUMAG00000011162	A1CF	100	94.118	ENSHGLG00000008955	A1CF	100	93.782	Heterocephalus_glaber_female
ENSUMAG00000011162	A1CF	100	93.445	ENSHGLG00100000518	A1CF	100	93.109	Heterocephalus_glaber_male
ENSUMAG00000011162	A1CF	100	69.935	ENSHCOG00000017669	a1cf	100	72.964	Hippocampus_comes
ENSUMAG00000011162	A1CF	90	82.463	ENSIPUG00000010367	a1cf	95	82.739	Ictalurus_punctatus
ENSUMAG00000011162	A1CF	100	75.935	ENSKMAG00000006568	a1cf	100	76.748	Kryptolebias_marmoratus
ENSUMAG00000011162	A1CF	99	74.629	ENSLBEG00000020994	a1cf	98	75.947	Labrus_bergylta
ENSUMAG00000011162	A1CF	100	81.145	ENSLACG00000008061	A1CF	100	80.976	Latimeria_chalumnae
ENSUMAG00000011162	A1CF	100	81.513	ENSLOCG00000006302	a1cf	100	81.513	Lepisosteus_oculatus
ENSUMAG00000011162	A1CF	100	93.613	ENSLAFG00000015462	A1CF	100	93.613	Loxodonta_africana
ENSUMAG00000011162	A1CF	100	94.257	ENSMFAG00000035948	A1CF	100	94.257	Macaca_fascicularis
ENSUMAG00000011162	A1CF	100	94.257	ENSMMUG00000007077	A1CF	100	94.257	Macaca_mulatta
ENSUMAG00000011162	A1CF	100	93.919	ENSMNEG00000031454	A1CF	100	93.919	Macaca_nemestrina
ENSUMAG00000011162	A1CF	100	95.439	ENSMLEG00000037223	A1CF	100	95.439	Mandrillus_leucophaeus
ENSUMAG00000011162	A1CF	100	72.340	ENSMAMG00000010402	a1cf	100	74.510	Mastacembelus_armatus
ENSUMAG00000011162	A1CF	100	76.303	ENSMZEG00005013245	a1cf	100	77.311	Maylandia_zebra
ENSUMAG00000011162	A1CF	100	88.345	ENSMGAG00000001507	A1CF	100	88.007	Meleagris_gallopavo
ENSUMAG00000011162	A1CF	100	91.933	ENSMAUG00000007422	A1cf	100	92.101	Mesocricetus_auratus
ENSUMAG00000011162	A1CF	100	92.809	ENSMICG00000003377	A1CF	100	92.977	Microcebus_murinus
ENSUMAG00000011162	A1CF	100	92.269	ENSMOCG00000021536	A1cf	100	92.101	Microtus_ochrogaster
ENSUMAG00000011162	A1CF	100	67.488	ENSMMOG00000009422	a1cf	100	69.637	Mola_mola
ENSUMAG00000011162	A1CF	92	88.073	ENSMODG00000016478	A1CF	97	89.225	Monodelphis_domestica
ENSUMAG00000011162	A1CF	100	72.941	ENSMALG00000012992	a1cf	100	72.773	Monopterus_albus
ENSUMAG00000011162	A1CF	100	91.933	MGP_CAROLIEiJ_G0022873	A1cf	100	91.765	Mus_caroli
ENSUMAG00000011162	A1CF	100	91.933	ENSMUSG00000052595	A1cf	99	94.474	Mus_musculus
ENSUMAG00000011162	A1CF	100	91.597	MGP_PahariEiJ_G0014366	A1cf	100	91.092	Mus_pahari
ENSUMAG00000011162	A1CF	100	91.429	MGP_SPRETEiJ_G0023792	A1cf	100	91.261	Mus_spretus
ENSUMAG00000011162	A1CF	100	90.878	ENSMPUG00000016971	A1CF	100	90.878	Mustela_putorius_furo
ENSUMAG00000011162	A1CF	100	94.454	ENSMLUG00000016071	A1CF	100	94.454	Myotis_lucifugus
ENSUMAG00000011162	A1CF	100	93.445	ENSNGAG00000015136	A1cf	100	93.277	Nannospalax_galili
ENSUMAG00000011162	A1CF	100	73.736	ENSNBRG00000001712	a1cf	100	75.693	Neolamprologus_brichardi
ENSUMAG00000011162	A1CF	100	95.798	ENSNLEG00000012028	A1CF	100	95.798	Nomascus_leucogenys
ENSUMAG00000011162	A1CF	97	88.351	ENSMEUG00000015909	A1CF	100	88.351	Notamacropus_eugenii
ENSUMAG00000011162	A1CF	89	83.619	ENSOPRG00000010667	A1CF	97	83.712	Ochotona_princeps
ENSUMAG00000011162	A1CF	100	74.062	ENSONIG00000019105	a1cf	100	75.367	Oreochromis_niloticus
ENSUMAG00000011162	A1CF	79	87.366	ENSOANG00000007360	A1CF	99	87.366	Ornithorhynchus_anatinus
ENSUMAG00000011162	A1CF	100	91.107	ENSOCUG00000011587	A1CF	100	91.611	Oryctolagus_cuniculus
ENSUMAG00000011162	A1CF	100	74.062	ENSORLG00000013342	a1cf	100	74.062	Oryzias_latipes
ENSUMAG00000011162	A1CF	100	74.959	ENSORLG00020000586	a1cf	100	75.327	Oryzias_latipes_hni
ENSUMAG00000011162	A1CF	100	74.795	ENSORLG00015018569	a1cf	100	75.163	Oryzias_latipes_hsok
ENSUMAG00000011162	A1CF	100	74.468	ENSOMEG00000013531	a1cf	100	73.977	Oryzias_melastigma
ENSUMAG00000011162	A1CF	100	93.581	ENSOGAG00000012884	A1CF	100	94.088	Otolemur_garnettii
ENSUMAG00000011162	A1CF	100	94.454	ENSOARG00000013695	A1CF	100	94.454	Ovis_aries
ENSUMAG00000011162	A1CF	97	95.009	ENSPPAG00000028115	A1CF	100	96.559	Pan_paniscus
ENSUMAG00000011162	A1CF	100	95.777	ENSPPRG00000012180	A1CF	100	95.946	Panthera_pardus
ENSUMAG00000011162	A1CF	100	95.777	ENSPTIG00000021223	A1CF	100	95.946	Panthera_tigris_altaica
ENSUMAG00000011162	A1CF	100	95.118	ENSPTRG00000002508	A1CF	100	94.949	Pan_troglodytes
ENSUMAG00000011162	A1CF	100	94.257	ENSPANG00000021988	A1CF	100	94.257	Papio_anubis
ENSUMAG00000011162	A1CF	100	80.235	ENSPKIG00000025176	a1cf	100	80.067	Paramormyrops_kingsleyae
ENSUMAG00000011162	A1CF	100	86.464	ENSPSIG00000010318	A1CF	100	86.125	Pelodiscus_sinensis
ENSUMAG00000011162	A1CF	89	70.667	ENSPMGG00000013359	a1cf	99	67.067	Periophthalmus_magnuspinnatus
ENSUMAG00000011162	A1CF	100	93.613	ENSPEMG00000015021	A1cf	100	93.613	Peromyscus_maniculatus_bairdii
ENSUMAG00000011162	A1CF	100	88.325	ENSPCIG00000002175	A1CF	100	88.325	Phascolarctos_cinereus
ENSUMAG00000011162	A1CF	100	75.244	ENSPFOG00000007437	-	100	76.710	Poecilia_formosa
ENSUMAG00000011162	A1CF	100	75.244	ENSPFOG00000006683	a1cf	100	76.710	Poecilia_formosa
ENSUMAG00000011162	A1CF	100	74.104	ENSPLAG00000000026	a1cf	100	75.570	Poecilia_latipinna
ENSUMAG00000011162	A1CF	100	74.104	ENSPLAG00000001210	-	100	75.570	Poecilia_latipinna
ENSUMAG00000011162	A1CF	100	67.647	ENSPMEG00000015529	-	100	69.118	Poecilia_mexicana
ENSUMAG00000011162	A1CF	100	66.503	ENSPMEG00000000921	a1cf	100	67.974	Poecilia_mexicana
ENSUMAG00000011162	A1CF	100	75.081	ENSPREG00000016298	a1cf	100	76.547	Poecilia_reticulata
ENSUMAG00000011162	A1CF	100	94.118	ENSPPYG00000002819	A1CF	100	93.950	Pongo_abelii
ENSUMAG00000011162	A1CF	82	72.881	ENSPCAG00000006463	A1CF	70	91.837	Procavia_capensis
ENSUMAG00000011162	A1CF	100	94.463	ENSPCOG00000024172	A1CF	100	94.631	Propithecus_coquereli
ENSUMAG00000011162	A1CF	100	74.878	ENSPNYG00000017944	a1cf	100	76.835	Pundamilia_nyererei
ENSUMAG00000011162	A1CF	100	78.974	ENSPNAG00000007704	a1cf	100	78.974	Pygocentrus_nattereri
ENSUMAG00000011162	A1CF	100	91.092	ENSRNOG00000033195	A1cf	100	90.924	Rattus_norvegicus
ENSUMAG00000011162	A1CF	100	88.889	ENSRBIG00000042892	A1CF	100	92.126	Rhinopithecus_bieti
ENSUMAG00000011162	A1CF	100	95.777	ENSRROG00000041398	A1CF	100	95.777	Rhinopithecus_roxellana
ENSUMAG00000011162	A1CF	100	95.462	ENSSBOG00000021930	A1CF	100	95.294	Saimiri_boliviensis_boliviensis
ENSUMAG00000011162	A1CF	100	88.364	ENSSHAG00000005096	A1CF	100	88.364	Sarcophilus_harrisii
ENSUMAG00000011162	A1CF	100	78.275	ENSSFOG00015011774	a1cf	100	78.275	Scleropages_formosus
ENSUMAG00000011162	A1CF	100	73.941	ENSSMAG00000013271	a1cf	100	74.267	Scophthalmus_maximus
ENSUMAG00000011162	A1CF	100	75.622	ENSSDUG00000013930	a1cf	100	76.451	Seriola_dumerili
ENSUMAG00000011162	A1CF	100	69.802	ENSSLDG00000004290	a1cf	100	69.802	Seriola_lalandi_dorsalis
ENSUMAG00000011162	A1CF	98	83.039	ENSSARG00000005940	A1CF	96	83.039	Sorex_araneus
ENSUMAG00000011162	A1CF	97	87.657	ENSSPUG00000006797	A1CF	95	87.411	Sphenodon_punctatus
ENSUMAG00000011162	A1CF	100	94.790	ENSSSCG00000010431	A1CF	100	94.790	Sus_scrofa
ENSUMAG00000011162	A1CF	100	86.957	ENSTGUG00000005090	A1CF	100	86.957	Taeniopygia_guttata
ENSUMAG00000011162	A1CF	100	74.062	ENSTRUG00000001982	a1cf	100	73.573	Takifugu_rubripes
ENSUMAG00000011162	A1CF	100	74.309	ENSTNIG00000003580	a1cf	100	73.821	Tetraodon_nigroviridis
ENSUMAG00000011162	A1CF	97	88.434	ENSTTRG00000013190	A1CF	95	86.482	Tursiops_truncatus
ENSUMAG00000011162	A1CF	100	98.142	ENSUAMG00000020065	A1CF	100	98.142	Ursus_americanus
ENSUMAG00000011162	A1CF	90	88.868	ENSVPAG00000006130	A1CF	86	88.676	Vicugna_pacos
ENSUMAG00000011162	A1CF	100	95.939	ENSVVUG00000002504	A1CF	100	95.939	Vulpes_vulpes
ENSUMAG00000011162	A1CF	100	78.992	ENSXETG00000006611	a1cf	100	78.655	Xenopus_tropicalis
ENSUMAG00000011162	A1CF	100	75.082	ENSXCOG00000003302	a1cf	100	76.066	Xiphophorus_couchianus
ENSUMAG00000011162	A1CF	100	76.230	ENSXMAG00000016703	a1cf	100	77.213	Xiphophorus_maculatus