EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000012417 (Gene tree)
Gene ID: 103673006
Gene Symbol: CSTF2
Alias: CstF-64
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 18975 bases
Position: chrKK498669.1:498712-517686
Accession: 2484
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000017497	RRM_1	PF00076.22	4.8e-24	1	1
ENSUMAP00000017482	RRM_1	PF00076.22	7.1e-24	1	1
ENSUMAP00000017477	RRM_1	PF00076.22	7.4e-24	1	1
ENSUMAP00000017502	RRM_1	PF00076.22	8e-24	1	1
ENSUMAP00000017474	RRM_1	PF00076.22	8.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000020641	CSTF2-203	1626	-	ENSUMAP00000017482	541 (aa)	-	-
ENSUMAT00000020632	CSTF2-201	1773	-	ENSUMAP00000017474	590 (aa)	-	-
ENSUMAT00000020659	CSTF2-204	1293	-	ENSUMAP00000017497	430 (aa)	-	-
ENSUMAT00000020635	CSTF2-202	1686	-	ENSUMAP00000017477	561 (aa)	-	-
ENSUMAT00000020665	CSTF2-205	1734	-	ENSUMAP00000017502	577 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000012417's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000012417's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000012417	CSTF2	99	77.966	ENSUMAG00000011141	CSTF2T	96	74.747

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000012417	CSTF2	100	98.270	ENSG00000101811	CSTF2	96	98.605	Homo_sapiens
ENSUMAG00000012417	CSTF2	97	82.787	ENSAPOG00000005630	cstf2	91	74.828	Acanthochromis_polyacanthus
ENSUMAG00000012417	CSTF2	100	99.308	ENSAMEG00000002082	CSTF2	100	90.397	Ailuropoda_melanoleuca
ENSUMAG00000012417	CSTF2	79	82.645	ENSACIG00000012852	cstf2	97	73.519	Amphilophus_citrinellus
ENSUMAG00000012417	CSTF2	97	81.148	ENSAOCG00000020905	cstf2	97	63.489	Amphiprion_ocellaris
ENSUMAG00000012417	CSTF2	97	81.148	ENSAPEG00000006526	cstf2	97	63.489	Amphiprion_percula
ENSUMAG00000012417	CSTF2	86	79.835	ENSATEG00000018186	cstf2	97	75.627	Anabas_testudineus
ENSUMAG00000012417	CSTF2	97	76.207	ENSAPLG00000007255	CSTF2	98	76.280	Anas_platyrhynchos
ENSUMAG00000012417	CSTF2	100	96.886	ENSANAG00000022342	CSTF2	100	88.978	Aotus_nancymaae
ENSUMAG00000012417	CSTF2	90	82.645	ENSACLG00000000779	cstf2	93	77.860	Astatotilapia_calliptera
ENSUMAG00000012417	CSTF2	89	80.709	ENSAMXG00000021477	cstf2	96	96.825	Astyanax_mexicanus
ENSUMAG00000012417	CSTF2	100	99.291	ENSBTAG00000003547	CSTF2	100	90.210	Bos_taurus
ENSUMAG00000012417	CSTF2	100	96.886	ENSCJAG00000004422	CSTF2	96	96.633	Callithrix_jacchus
ENSUMAG00000012417	CSTF2	100	99.291	ENSCAFG00000017551	CSTF2	100	90.468	Canis_familiaris
ENSUMAG00000012417	CSTF2	100	99.291	ENSCAFG00020007619	CSTF2	100	91.214	Canis_lupus_dingo
ENSUMAG00000012417	CSTF2	100	98.582	ENSCHIG00000016994	CSTF2	100	90.210	Capra_hircus
ENSUMAG00000012417	CSTF2	100	98.270	ENSTSYG00000006529	CSTF2	100	90.034	Carlito_syrichta
ENSUMAG00000012417	CSTF2	100	96.454	ENSCPOG00000015255	CSTF2	100	88.107	Cavia_porcellus
ENSUMAG00000012417	CSTF2	100	96.886	ENSCCAG00000032975	CSTF2	100	89.189	Cebus_capucinus
ENSUMAG00000012417	CSTF2	100	97.924	ENSCATG00000022835	CSTF2	100	89.510	Cercocebus_atys
ENSUMAG00000012417	CSTF2	100	95.502	ENSCLAG00000001904	CSTF2	100	88.107	Chinchilla_lanigera
ENSUMAG00000012417	CSTF2	100	98.270	ENSCSAG00000010360	CSTF2	100	89.280	Chlorocebus_sabaeus
ENSUMAG00000012417	CSTF2	70	99.371	ENSCHOG00000012803	CSTF2	75	99.371	Choloepus_hoffmanni
ENSUMAG00000012417	CSTF2	99	86.254	ENSCPBG00000014293	CSTF2	100	70.262	Chrysemys_picta_bellii
ENSUMAG00000012417	CSTF2	100	98.270	ENSCANG00000030612	CSTF2	100	89.685	Colobus_angolensis_palliatus
ENSUMAG00000012417	CSTF2	100	93.080	ENSCGRG00001023023	Cstf2	100	84.828	Cricetulus_griseus_chok1gshd
ENSUMAG00000012417	CSTF2	100	92.734	ENSCGRG00000003897	Cstf2	100	87.679	Cricetulus_griseus_crigri
ENSUMAG00000012417	CSTF2	86	82.573	ENSCVAG00000005731	cstf2	97	75.725	Cyprinodon_variegatus
ENSUMAG00000012417	CSTF2	95	73.835	ENSDARG00000090788	cstf2	93	90.625	Danio_rerio
ENSUMAG00000012417	CSTF2	100	92.096	ENSDORG00000007195	Cstf2	100	85.017	Dipodomys_ordii
ENSUMAG00000012417	CSTF2	84	94.595	ENSETEG00000004931	CSTF2	68	94.595	Echinops_telfairi
ENSUMAG00000012417	CSTF2	100	97.872	ENSEASG00005001216	CSTF2	100	90.285	Equus_asinus_asinus
ENSUMAG00000012417	CSTF2	100	97.872	ENSECAG00000009325	CSTF2	100	90.285	Equus_caballus
ENSUMAG00000012417	CSTF2	100	98.616	ENSFCAG00000007000	CSTF2	100	91.290	Felis_catus
ENSUMAG00000012417	CSTF2	92	74.821	ENSFALG00000003859	CSTF2	100	75.179	Ficedula_albicollis
ENSUMAG00000012417	CSTF2	100	95.848	ENSFDAG00000002416	CSTF2	100	88.818	Fukomys_damarensis
ENSUMAG00000012417	CSTF2	87	80.498	ENSFHEG00000017065	cstf2	94	63.375	Fundulus_heteroclitus
ENSUMAG00000012417	CSTF2	78	77.966	ENSGMOG00000005145	cstf2	99	60.183	Gadus_morhua
ENSUMAG00000012417	CSTF2	100	77.178	ENSGALG00000006760	CSTF2	99	84.000	Gallus_gallus
ENSUMAG00000012417	CSTF2	80	79.518	ENSGAFG00000020027	cstf2	91	75.000	Gambusia_affinis
ENSUMAG00000012417	CSTF2	85	78.138	ENSGACG00000017326	cstf2	98	73.118	Gasterosteus_aculeatus
ENSUMAG00000012417	CSTF2	99	85.085	ENSGAGG00000006037	CSTF2	100	75.598	Gopherus_agassizii
ENSUMAG00000012417	CSTF2	100	98.270	ENSGGOG00000022267	CSTF2	100	89.685	Gorilla_gorilla
ENSUMAG00000012417	CSTF2	90	81.301	ENSHBUG00000016183	cstf2	93	76.727	Haplochromis_burtoni
ENSUMAG00000012417	CSTF2	100	81.661	ENSHGLG00000013455	-	100	77.954	Heterocephalus_glaber_female
ENSUMAG00000012417	CSTF2	100	96.194	ENSHGLG00000000659	-	100	88.215	Heterocephalus_glaber_female
ENSUMAG00000012417	CSTF2	100	82.007	ENSHGLG00100015391	-	100	78.131	Heterocephalus_glaber_male
ENSUMAG00000012417	CSTF2	100	96.194	ENSHGLG00100001130	-	100	88.215	Heterocephalus_glaber_male
ENSUMAG00000012417	CSTF2	99	63.702	ENSHCOG00000005157	cstf2	92	74.570	Hippocampus_comes
ENSUMAG00000012417	CSTF2	86	78.295	ENSIPUG00000017839	cstf2	99	64.035	Ictalurus_punctatus
ENSUMAG00000012417	CSTF2	100	96.886	ENSSTOG00000023445	CSTF2	100	87.522	Ictidomys_tridecemlineatus
ENSUMAG00000012417	CSTF2	100	95.502	ENSJJAG00000020507	Cstf2	100	86.482	Jaculus_jaculus
ENSUMAG00000012417	CSTF2	83	80.247	ENSKMAG00000001068	cstf2	97	62.613	Kryptolebias_marmoratus
ENSUMAG00000012417	CSTF2	51	93.220	ENSLBEG00000028720	cstf2	83	87.500	Labrus_bergylta
ENSUMAG00000012417	CSTF2	95	78.082	ENSLACG00000015927	CSTF2	99	66.557	Latimeria_chalumnae
ENSUMAG00000012417	CSTF2	98	77.778	ENSLOCG00000015300	cstf2	93	69.174	Lepisosteus_oculatus
ENSUMAG00000012417	CSTF2	100	95.848	ENSLAFG00000000474	CSTF2	100	87.437	Loxodonta_africana
ENSUMAG00000012417	CSTF2	100	98.270	ENSMFAG00000043888	CSTF2	100	89.685	Macaca_fascicularis
ENSUMAG00000012417	CSTF2	100	98.270	ENSMMUG00000013008	CSTF2	100	90.219	Macaca_mulatta
ENSUMAG00000012417	CSTF2	100	98.270	ENSMNEG00000041824	CSTF2	100	90.034	Macaca_nemestrina
ENSUMAG00000012417	CSTF2	100	98.270	ENSMLEG00000036870	CSTF2	100	89.685	Mandrillus_leucophaeus
ENSUMAG00000012417	CSTF2	92	79.399	ENSMAMG00000020364	cstf2	95	74.046	Mastacembelus_armatus
ENSUMAG00000012417	CSTF2	90	82.645	ENSMZEG00005007200	cstf2	97	76.812	Maylandia_zebra
ENSUMAG00000012417	CSTF2	90	90.541	ENSMGAG00000004139	CSTF2	99	83.267	Meleagris_gallopavo
ENSUMAG00000012417	CSTF2	100	93.426	ENSMAUG00000000965	Cstf2	100	84.655	Mesocricetus_auratus
ENSUMAG00000012417	CSTF2	100	96.194	ENSMICG00000014121	CSTF2	100	90.177	Microcebus_murinus
ENSUMAG00000012417	CSTF2	100	93.426	ENSMOCG00000008081	Cstf2	100	85.043	Microtus_ochrogaster
ENSUMAG00000012417	CSTF2	83	91.795	ENSMMOG00000000538	cstf2	97	57.818	Mola_mola
ENSUMAG00000012417	CSTF2	92	87.500	ENSMODG00000011785	CSTF2	100	79.798	Monodelphis_domestica
ENSUMAG00000012417	CSTF2	100	93.772	MGP_CAROLIEiJ_G0033383	Cstf2	100	85.851	Mus_caroli
ENSUMAG00000012417	CSTF2	100	93.772	ENSMUSG00000031256	Cstf2	100	84.828	Mus_musculus
ENSUMAG00000012417	CSTF2	100	93.772	MGP_PahariEiJ_G0031923	Cstf2	100	85.987	Mus_pahari
ENSUMAG00000012417	CSTF2	100	93.772	MGP_SPRETEiJ_G0034548	Cstf2	100	85.851	Mus_spretus
ENSUMAG00000012417	CSTF2	100	99.308	ENSMPUG00000002339	CSTF2	100	90.808	Mustela_putorius_furo
ENSUMAG00000012417	CSTF2	100	95.745	ENSMLUG00000004598	CSTF2	98	88.076	Myotis_lucifugus
ENSUMAG00000012417	CSTF2	100	95.156	ENSNGAG00000021985	Cstf2	100	86.528	Nannospalax_galili
ENSUMAG00000012417	CSTF2	96	56.981	ENSNBRG00000021694	cstf2	100	59.475	Neolamprologus_brichardi
ENSUMAG00000012417	CSTF2	100	98.616	ENSNLEG00000007510	CSTF2	100	89.685	Nomascus_leucogenys
ENSUMAG00000012417	CSTF2	91	79.175	ENSMEUG00000014025	-	100	79.256	Notamacropus_eugenii
ENSUMAG00000012417	CSTF2	100	82.353	ENSMEUG00000007875	-	100	77.345	Notamacropus_eugenii
ENSUMAG00000012417	CSTF2	100	85.467	ENSMEUG00000011186	-	100	81.416	Notamacropus_eugenii
ENSUMAG00000012417	CSTF2	86	80.543	ENSOPRG00000003106	CSTF2	87	80.543	Ochotona_princeps
ENSUMAG00000012417	CSTF2	100	95.848	ENSODEG00000002059	CSTF2	100	87.175	Octodon_degus
ENSUMAG00000012417	CSTF2	86	79.600	ENSONIG00000002631	cstf2	99	57.562	Oreochromis_niloticus
ENSUMAG00000012417	CSTF2	88	98.214	ENSOANG00000004208	CSTF2	87	91.429	Ornithorhynchus_anatinus
ENSUMAG00000012417	CSTF2	100	95.848	ENSOCUG00000010468	CSTF2	100	87.002	Oryctolagus_cuniculus
ENSUMAG00000012417	CSTF2	95	71.530	ENSORLG00000001380	cstf2	91	72.028	Oryzias_latipes
ENSUMAG00000012417	CSTF2	85	80.000	ENSORLG00020021917	cstf2	97	61.887	Oryzias_latipes_hni
ENSUMAG00000012417	CSTF2	85	79.592	ENSORLG00015011996	cstf2	97	61.818	Oryzias_latipes_hsok
ENSUMAG00000012417	CSTF2	85	80.913	ENSOMEG00000015507	cstf2	97	72.852	Oryzias_melastigma
ENSUMAG00000012417	CSTF2	100	96.540	ENSOGAG00000011192	CSTF2	100	88.712	Otolemur_garnettii
ENSUMAG00000012417	CSTF2	100	98.582	ENSOARG00000001022	CSTF2	100	90.210	Ovis_aries
ENSUMAG00000012417	CSTF2	100	98.270	ENSPPAG00000031804	CSTF2	100	89.685	Pan_paniscus
ENSUMAG00000012417	CSTF2	100	98.616	ENSPPRG00000022492	CSTF2	100	91.122	Panthera_pardus
ENSUMAG00000012417	CSTF2	100	98.582	ENSPTIG00000009922	CSTF2	100	90.955	Panthera_tigris_altaica
ENSUMAG00000012417	CSTF2	100	98.270	ENSPTRG00000022090	CSTF2	100	89.685	Pan_troglodytes
ENSUMAG00000012417	CSTF2	100	98.270	ENSPANG00000002303	CSTF2	100	89.776	Papio_anubis
ENSUMAG00000012417	CSTF2	98	75.704	ENSPKIG00000005033	cstf2	97	64.140	Paramormyrops_kingsleyae
ENSUMAG00000012417	CSTF2	99	81.328	ENSPMGG00000006534	cstf2	91	73.264	Periophthalmus_magnuspinnatus
ENSUMAG00000012417	CSTF2	100	93.772	ENSPEMG00000019415	Cstf2	100	83.966	Peromyscus_maniculatus_bairdii
ENSUMAG00000012417	CSTF2	100	85.121	ENSPCIG00000002989	CSTF2	100	80.235	Phascolarctos_cinereus
ENSUMAG00000012417	CSTF2	88	79.920	ENSPLAG00000011176	cstf2	91	76.000	Poecilia_latipinna
ENSUMAG00000012417	CSTF2	88	79.920	ENSPMEG00000017743	cstf2	91	74.643	Poecilia_mexicana
ENSUMAG00000012417	CSTF2	88	79.920	ENSPREG00000011481	cstf2	97	58.714	Poecilia_reticulata
ENSUMAG00000012417	CSTF2	100	98.616	ENSPPYG00000020541	CSTF2	100	89.447	Pongo_abelii
ENSUMAG00000012417	CSTF2	100	97.232	ENSPCOG00000027744	CSTF2	100	90.372	Propithecus_coquereli
ENSUMAG00000012417	CSTF2	92	96.454	ENSPVAG00000008342	CSTF2	100	75.404	Pteropus_vampyrus
ENSUMAG00000012417	CSTF2	90	81.301	ENSPNYG00000010852	cstf2	94	90.411	Pundamilia_nyererei
ENSUMAG00000012417	CSTF2	97	76.325	ENSPNAG00000018887	cstf2	97	65.000	Pygocentrus_nattereri
ENSUMAG00000012417	CSTF2	100	93.426	ENSRNOG00000048025	Cstf2	100	85.913	Rattus_norvegicus
ENSUMAG00000012417	CSTF2	100	98.270	ENSRBIG00000030745	CSTF2	100	88.112	Rhinopithecus_bieti
ENSUMAG00000012417	CSTF2	100	98.270	ENSRROG00000045042	CSTF2	100	89.685	Rhinopithecus_roxellana
ENSUMAG00000012417	CSTF2	100	97.232	ENSSBOG00000021649	CSTF2	100	89.189	Saimiri_boliviensis_boliviensis
ENSUMAG00000012417	CSTF2	95	100.000	ENSSHAG00000003681	CSTF2	87	95.714	Sarcophilus_harrisii
ENSUMAG00000012417	CSTF2	99	77.113	ENSSFOG00015006348	cstf2	98	67.257	Scleropages_formosus
ENSUMAG00000012417	CSTF2	85	82.988	ENSSMAG00000013463	cstf2	97	62.007	Scophthalmus_maximus
ENSUMAG00000012417	CSTF2	100	73.820	ENSSPUG00000005288	-	95	84.899	Sphenodon_punctatus
ENSUMAG00000012417	CSTF2	100	98.582	ENSSSCG00000012486	CSTF2	96	96.970	Sus_scrofa
ENSUMAG00000012417	CSTF2	100	76.027	ENSTGUG00000002253	CSTF2	100	76.701	Taeniopygia_guttata
ENSUMAG00000012417	CSTF2	99	62.612	ENSTNIG00000016860	cstf2	99	62.970	Tetraodon_nigroviridis
ENSUMAG00000012417	CSTF2	67	98.780	ENSTBEG00000010029	-	69	98.780	Tupaia_belangeri
ENSUMAG00000012417	CSTF2	100	97.872	ENSTTRG00000013556	CSTF2	100	90.121	Tursiops_truncatus
ENSUMAG00000012417	CSTF2	100	100.000	ENSUAMG00000026605	CSTF2	100	91.601	Ursus_americanus
ENSUMAG00000012417	CSTF2	97	85.294	ENSVPAG00000006466	CSTF2	72	96.501	Vicugna_pacos
ENSUMAG00000012417	CSTF2	100	99.291	ENSVVUG00000004717	CSTF2	100	90.641	Vulpes_vulpes
ENSUMAG00000012417	CSTF2	94	87.143	ENSXETG00000009642	cstf2	87	87.143	Xenopus_tropicalis
ENSUMAG00000012417	CSTF2	85	76.305	ENSXCOG00000016436	cstf2	91	95.455	Xiphophorus_couchianus
ENSUMAG00000012417	CSTF2	88	80.321	ENSXMAG00000013524	cstf2	97	59.222	Xiphophorus_maculatus