EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000012953 (Gene tree)
Gene ID: 103676269
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 100683 bases
Position: chrKK498709.1:7271610-7372292
Accession: 103676269
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000017646	Upf2	PF04050.14	8.5e-33	1	1
ENSUMAP00000017646	MIF4G	PF02854.19	1.6e-74	1	3
ENSUMAP00000017646	MIF4G	PF02854.19	1.6e-74	2	3
ENSUMAP00000017646	MIF4G	PF02854.19	1.6e-74	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000020837	UPF2-201	5909	-	ENSUMAP00000017646	1336 (aa)	XP_008703657	UPI0004DFF816

Gene Model

Click here to download ENSUMAG00000012953's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03013	RNA transport	KEGG
umr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000012953's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000012953	UPF2	95	97.956	ENSG00000151461	UPF2	100	97.956	Homo_sapiens
ENSUMAG00000012953	UPF2	95	78.935	ENSAPOG00000015837	UPF2	100	78.778	Acanthochromis_polyacanthus
ENSUMAG00000012953	UPF2	95	99.685	ENSAMEG00000004586	UPF2	100	99.685	Ailuropoda_melanoleuca
ENSUMAG00000012953	UPF2	95	83.047	ENSACIG00000018078	UPF2	100	82.969	Amphilophus_citrinellus
ENSUMAG00000012953	UPF2	95	83.073	ENSAOCG00000016766	UPF2	100	83.151	Amphiprion_ocellaris
ENSUMAG00000012953	UPF2	95	83.151	ENSAPEG00000019084	UPF2	100	83.229	Amphiprion_percula
ENSUMAG00000012953	UPF2	95	82.893	ENSATEG00000021677	UPF2	99	82.944	Anabas_testudineus
ENSUMAG00000012953	UPF2	95	87.107	ENSAPLG00000010287	UPF2	90	91.486	Anas_platyrhynchos
ENSUMAG00000012953	UPF2	95	92.604	ENSACAG00000009259	UPF2	100	92.604	Anolis_carolinensis
ENSUMAG00000012953	UPF2	95	87.814	ENSANAG00000028451	UPF2	99	86.557	Aotus_nancymaae
ENSUMAG00000012953	UPF2	95	81.435	ENSACLG00000012696	UPF2	100	83.229	Astatotilapia_calliptera
ENSUMAG00000012953	UPF2	95	83.412	ENSAMXG00000013700	UPF2	99	83.803	Astyanax_mexicanus
ENSUMAG00000012953	UPF2	95	99.135	ENSBTAG00000000288	UPF2	100	99.135	Bos_taurus
ENSUMAG00000012953	UPF2	95	97.956	ENSCJAG00000020685	UPF2	100	97.956	Callithrix_jacchus
ENSUMAG00000012953	UPF2	95	99.528	ENSCAFG00000004839	UPF2	100	99.528	Canis_familiaris
ENSUMAG00000012953	UPF2	95	97.084	ENSCAFG00020005882	UPF2	98	99.308	Canis_lupus_dingo
ENSUMAG00000012953	UPF2	95	99.213	ENSCHIG00000020359	UPF2	100	99.213	Capra_hircus
ENSUMAG00000012953	UPF2	95	97.718	ENSTSYG00000000935	UPF2	100	97.718	Carlito_syrichta
ENSUMAG00000012953	UPF2	87	87.694	ENSCAPG00000016658	UPF2	94	87.230	Cavia_aperea
ENSUMAG00000012953	UPF2	94	96.273	ENSCPOG00000008809	UPF2	99	96.273	Cavia_porcellus
ENSUMAG00000012953	UPF2	95	91.660	ENSCCAG00000035991	UPF2	100	91.660	Cebus_capucinus
ENSUMAG00000012953	UPF2	95	98.113	ENSCATG00000032679	UPF2	100	98.113	Cercocebus_atys
ENSUMAG00000012953	UPF2	95	98.033	ENSCLAG00000011434	UPF2	100	98.033	Chinchilla_lanigera
ENSUMAG00000012953	UPF2	95	98.192	ENSCSAG00000013372	UPF2	100	98.192	Chlorocebus_sabaeus
ENSUMAG00000012953	UPF2	83	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSUMAG00000012953	UPF2	95	92.277	ENSCPBG00000027823	UPF2	100	93.144	Chrysemys_picta_bellii
ENSUMAG00000012953	UPF2	75	48.963	ENSCSAVG00000007772	-	79	50.318	Ciona_savignyi
ENSUMAG00000012953	UPF2	95	91.719	ENSCANG00000040396	UPF2	100	92.368	Colobus_angolensis_palliatus
ENSUMAG00000012953	UPF2	95	98.112	ENSCGRG00001019347	Upf2	100	98.112	Cricetulus_griseus_chok1gshd
ENSUMAG00000012953	UPF2	95	98.112	ENSCGRG00000017993	Upf2	100	98.112	Cricetulus_griseus_crigri
ENSUMAG00000012953	UPF2	86	80.809	ENSCSEG00000003520	UPF2	91	80.567	Cynoglossus_semilaevis
ENSUMAG00000012953	UPF2	94	82.954	ENSCVAG00000006167	UPF2	100	82.404	Cyprinodon_variegatus
ENSUMAG00000012953	UPF2	95	98.741	ENSDNOG00000018160	UPF2	100	98.741	Dasypus_novemcinctus
ENSUMAG00000012953	UPF2	95	97.797	ENSDORG00000002478	Upf2	100	97.797	Dipodomys_ordii
ENSUMAG00000012953	UPF2	84	36.386	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSUMAG00000012953	UPF2	69	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSUMAG00000012953	UPF2	65	68.507	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSUMAG00000012953	UPF2	95	98.899	ENSEASG00005019274	UPF2	100	99.074	Equus_asinus_asinus
ENSUMAG00000012953	UPF2	95	98.977	ENSECAG00000017022	UPF2	100	98.977	Equus_caballus
ENSUMAG00000012953	UPF2	78	95.527	ENSEEUG00000007819	UPF2	82	95.527	Erinaceus_europaeus
ENSUMAG00000012953	UPF2	95	81.861	ENSELUG00000012014	UPF2	100	82.193	Esox_lucius
ENSUMAG00000012953	UPF2	95	99.448	ENSFCAG00000005785	UPF2	100	99.371	Felis_catus
ENSUMAG00000012953	UPF2	96	93.740	ENSFALG00000001889	UPF2	98	93.740	Ficedula_albicollis
ENSUMAG00000012953	UPF2	95	97.797	ENSFDAG00000014348	UPF2	100	97.797	Fukomys_damarensis
ENSUMAG00000012953	UPF2	94	83.557	ENSFHEG00000009826	UPF2	99	83.135	Fundulus_heteroclitus
ENSUMAG00000012953	UPF2	86	83.938	ENSGMOG00000005557	UPF2	91	83.635	Gadus_morhua
ENSUMAG00000012953	UPF2	95	94.261	ENSGALG00000033772	UPF2	100	94.261	Gallus_gallus
ENSUMAG00000012953	UPF2	95	79.984	ENSGAFG00000020867	UPF2	100	82.059	Gambusia_affinis
ENSUMAG00000012953	UPF2	86	84.469	ENSGACG00000001080	UPF2	100	82.734	Gasterosteus_aculeatus
ENSUMAG00000012953	UPF2	95	93.627	ENSGAGG00000002700	UPF2	100	93.627	Gopherus_agassizii
ENSUMAG00000012953	UPF2	95	97.956	ENSGGOG00000001479	UPF2	100	97.956	Gorilla_gorilla
ENSUMAG00000012953	UPF2	95	81.406	ENSHBUG00000004249	UPF2	100	83.203	Haplochromis_burtoni
ENSUMAG00000012953	UPF2	95	98.033	ENSHGLG00000015176	-	100	98.033	Heterocephalus_glaber_female
ENSUMAG00000012953	UPF2	95	86.614	ENSHGLG00000003822	-	99	85.512	Heterocephalus_glaber_female
ENSUMAG00000012953	UPF2	95	95.114	ENSHGLG00100010036	UPF2	100	95.114	Heterocephalus_glaber_male
ENSUMAG00000012953	UPF2	95	80.808	ENSHCOG00000004025	UPF2	99	80.808	Hippocampus_comes
ENSUMAG00000012953	UPF2	95	82.137	ENSIPUG00000015524	UPF2	100	82.436	Ictalurus_punctatus
ENSUMAG00000012953	UPF2	95	98.348	ENSSTOG00000013075	UPF2	100	98.348	Ictidomys_tridecemlineatus
ENSUMAG00000012953	UPF2	95	96.853	ENSJJAG00000004913	Upf2	100	96.853	Jaculus_jaculus
ENSUMAG00000012953	UPF2	87	84.851	ENSKMAG00000001071	UPF2	99	82.964	Kryptolebias_marmoratus
ENSUMAG00000012953	UPF2	67	85.936	ENSLBEG00000000728	-	93	83.104	Labrus_bergylta
ENSUMAG00000012953	UPF2	87	85.751	ENSLBEG00000016394	-	99	83.424	Labrus_bergylta
ENSUMAG00000012953	UPF2	95	79.702	ENSLACG00000015945	UPF2	100	79.937	Latimeria_chalumnae
ENSUMAG00000012953	UPF2	94	86.604	ENSLOCG00000015698	UPF2	100	86.525	Lepisosteus_oculatus
ENSUMAG00000012953	UPF2	95	98.035	ENSMFAG00000043865	UPF2	100	98.035	Macaca_fascicularis
ENSUMAG00000012953	UPF2	95	98.035	ENSMMUG00000008241	UPF2	100	98.035	Macaca_mulatta
ENSUMAG00000012953	UPF2	77	97.268	ENSMNEG00000008062	UPF2	100	97.268	Macaca_nemestrina
ENSUMAG00000012953	UPF2	95	94.762	ENSMLEG00000036120	UPF2	100	99.758	Mandrillus_leucophaeus
ENSUMAG00000012953	UPF2	95	82.582	ENSMAMG00000018276	UPF2	100	82.710	Mastacembelus_armatus
ENSUMAG00000012953	UPF2	95	81.435	ENSMZEG00005021595	UPF2	100	83.229	Maylandia_zebra
ENSUMAG00000012953	UPF2	95	93.548	ENSMGAG00000004573	UPF2	99	93.548	Meleagris_gallopavo
ENSUMAG00000012953	UPF2	95	95.751	ENSMAUG00000016512	Upf2	100	95.751	Mesocricetus_auratus
ENSUMAG00000012953	UPF2	90	99.490	ENSMICG00000001716	UPF2	99	99.482	Microcebus_murinus
ENSUMAG00000012953	UPF2	95	97.010	ENSMOCG00000008263	Upf2	100	97.010	Microtus_ochrogaster
ENSUMAG00000012953	UPF2	85	83.203	ENSMMOG00000006528	UPF2	100	79.515	Mola_mola
ENSUMAG00000012953	UPF2	95	96.459	ENSMODG00000016794	UPF2	100	96.459	Monodelphis_domestica
ENSUMAG00000012953	UPF2	95	82.486	ENSMALG00000002663	UPF2	100	82.616	Monopterus_albus
ENSUMAG00000012953	UPF2	95	97.404	MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	Mus_caroli
ENSUMAG00000012953	UPF2	95	97.404	ENSMUSG00000043241	Upf2	100	97.404	Mus_musculus
ENSUMAG00000012953	UPF2	95	97.010	MGP_PahariEiJ_G0019217	Upf2	100	97.333	Mus_pahari
ENSUMAG00000012953	UPF2	95	97.640	MGP_SPRETEiJ_G0024075	Upf2	100	97.714	Mus_spretus
ENSUMAG00000012953	UPF2	95	99.528	ENSMPUG00000001064	UPF2	100	99.528	Mustela_putorius_furo
ENSUMAG00000012953	UPF2	95	98.350	ENSMLUG00000000228	UPF2	100	98.350	Myotis_lucifugus
ENSUMAG00000012953	UPF2	95	81.435	ENSNBRG00000013629	UPF2	100	83.229	Neolamprologus_brichardi
ENSUMAG00000012953	UPF2	95	97.956	ENSNLEG00000012058	UPF2	100	97.956	Nomascus_leucogenys
ENSUMAG00000012953	UPF2	53	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSUMAG00000012953	UPF2	78	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSUMAG00000012953	UPF2	95	97.561	ENSODEG00000001290	UPF2	100	97.561	Octodon_degus
ENSUMAG00000012953	UPF2	95	81.513	ENSONIG00000017991	UPF2	100	83.307	Oreochromis_niloticus
ENSUMAG00000012953	UPF2	95	97.571	ENSOCUG00000006230	UPF2	100	97.571	Oryctolagus_cuniculus
ENSUMAG00000012953	UPF2	95	81.712	ENSORLG00000017189	UPF2	100	82.215	Oryzias_latipes
ENSUMAG00000012953	UPF2	95	81.712	ENSORLG00020005969	UPF2	100	82.215	Oryzias_latipes_hni
ENSUMAG00000012953	UPF2	95	81.712	ENSORLG00015005713	UPF2	100	82.215	Oryzias_latipes_hsok
ENSUMAG00000012953	UPF2	95	78.393	ENSOMEG00000023420	UPF2	98	79.281	Oryzias_melastigma
ENSUMAG00000012953	UPF2	95	97.876	ENSOGAG00000005796	UPF2	100	97.876	Otolemur_garnettii
ENSUMAG00000012953	UPF2	95	99.057	ENSOARG00000014587	UPF2	100	99.057	Ovis_aries
ENSUMAG00000012953	UPF2	95	93.980	ENSPPAG00000037953	UPF2	100	94.724	Pan_paniscus
ENSUMAG00000012953	UPF2	95	99.371	ENSPPRG00000000690	UPF2	100	99.371	Panthera_pardus
ENSUMAG00000012953	UPF2	95	99.371	ENSPTIG00000008867	UPF2	100	99.371	Panthera_tigris_altaica
ENSUMAG00000012953	UPF2	95	97.956	ENSPTRG00000002291	UPF2	100	97.956	Pan_troglodytes
ENSUMAG00000012953	UPF2	95	98.113	ENSPANG00000023399	UPF2	100	98.113	Papio_anubis
ENSUMAG00000012953	UPF2	95	82.059	ENSPKIG00000025502	UPF2	100	81.201	Paramormyrops_kingsleyae
ENSUMAG00000012953	UPF2	57	92.500	ENSPSIG00000015158	UPF2	96	92.500	Pelodiscus_sinensis
ENSUMAG00000012953	UPF2	95	80.361	ENSPMGG00000005259	UPF2	100	81.618	Periophthalmus_magnuspinnatus
ENSUMAG00000012953	UPF2	88	95.918	ENSPEMG00000015731	Upf2	99	95.918	Peromyscus_maniculatus_bairdii
ENSUMAG00000012953	UPF2	95	96.145	ENSPCIG00000006656	UPF2	100	96.145	Phascolarctos_cinereus
ENSUMAG00000012953	UPF2	95	80.140	ENSPFOG00000017118	UPF2	100	82.371	Poecilia_formosa
ENSUMAG00000012953	UPF2	95	80.140	ENSPLAG00000005094	UPF2	100	82.371	Poecilia_latipinna
ENSUMAG00000012953	UPF2	95	80.140	ENSPMEG00000017009	UPF2	100	82.371	Poecilia_mexicana
ENSUMAG00000012953	UPF2	95	80.063	ENSPREG00000021880	UPF2	100	82.459	Poecilia_reticulata
ENSUMAG00000012953	UPF2	63	99.282	ENSPPYG00000002089	-	100	99.282	Pongo_abelii
ENSUMAG00000012953	UPF2	95	84.500	ENSPCAG00000000684	UPF2	100	84.500	Procavia_capensis
ENSUMAG00000012953	UPF2	95	95.193	ENSPCOG00000021656	UPF2	100	95.351	Propithecus_coquereli
ENSUMAG00000012953	UPF2	95	91.274	ENSPVAG00000017286	UPF2	100	91.274	Pteropus_vampyrus
ENSUMAG00000012953	UPF2	95	78.984	ENSPNYG00000017096	UPF2	100	80.781	Pundamilia_nyererei
ENSUMAG00000012953	UPF2	95	83.385	ENSPNAG00000009357	UPF2	100	83.931	Pygocentrus_nattereri
ENSUMAG00000012953	UPF2	95	91.523	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSUMAG00000012953	UPF2	95	97.006	ENSRBIG00000037780	UPF2	100	97.006	Rhinopithecus_bieti
ENSUMAG00000012953	UPF2	95	97.956	ENSRROG00000043547	UPF2	100	97.956	Rhinopithecus_roxellana
ENSUMAG00000012953	UPF2	95	97.720	ENSSBOG00000020012	UPF2	100	97.720	Saimiri_boliviensis_boliviensis
ENSUMAG00000012953	UPF2	95	81.761	ENSSFOG00015023788	upf2	100	83.164	Scleropages_formosus
ENSUMAG00000012953	UPF2	85	83.001	ENSSMAG00000007637	UPF2	100	79.302	Scophthalmus_maximus
ENSUMAG00000012953	UPF2	95	83.073	ENSSDUG00000017244	UPF2	99	83.229	Seriola_dumerili
ENSUMAG00000012953	UPF2	95	81.363	ENSSLDG00000016866	UPF2	100	81.597	Seriola_lalandi_dorsalis
ENSUMAG00000012953	UPF2	95	96.459	ENSSARG00000008615	UPF2	100	96.459	Sorex_araneus
ENSUMAG00000012953	UPF2	95	90.787	ENSSPUG00000014544	UPF2	99	90.787	Sphenodon_punctatus
ENSUMAG00000012953	UPF2	65	99.194	ENSSSCG00000011117	-	100	99.194	Sus_scrofa
ENSUMAG00000012953	UPF2	95	94.006	ENSTGUG00000002163	-	100	94.006	Taeniopygia_guttata
ENSUMAG00000012953	UPF2	95	82.605	ENSTRUG00000007519	UPF2	99	82.527	Takifugu_rubripes
ENSUMAG00000012953	UPF2	88	90.517	ENSTBEG00000012679	UPF2	93	90.855	Tupaia_belangeri
ENSUMAG00000012953	UPF2	95	98.820	ENSTTRG00000016388	UPF2	100	98.820	Tursiops_truncatus
ENSUMAG00000012953	UPF2	90	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSUMAG00000012953	UPF2	81	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSUMAG00000012953	UPF2	95	99.449	ENSVVUG00000006166	UPF2	100	99.449	Vulpes_vulpes
ENSUMAG00000012953	UPF2	95	82.552	ENSXETG00000033103	UPF2	100	81.193	Xenopus_tropicalis
ENSUMAG00000012953	UPF2	87	84.556	ENSXCOG00000011604	UPF2	100	82.031	Xiphophorus_couchianus
ENSUMAG00000012953	UPF2	87	84.923	ENSXMAG00000017209	UPF2	100	82.059	Xiphophorus_maculatus