EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000013486 (Gene tree)
Gene ID: 103682338
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 12382 bases
Position: chrKK499555.1:962862-975243
Accession: 12651
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000019106	tRNA-synt_1g	PF09334.11	3.1e-08	1	1
ENSUMAP00000019147	tRNA-synt_1g	PF09334.11	8.3e-08	1	1
ENSUMAP00000019114	tRNA-synt_1g	PF09334.11	9.9e-08	1	1
ENSUMAP00000019147	Anticodon_1	PF08264.13	3.1e-33	1	1
ENSUMAP00000019114	Anticodon_1	PF08264.13	4.1e-33	1	1
ENSUMAP00000019106	Anticodon_1	PF08264.13	3e-32	1	1
ENSUMAP00000019106	tRNA-synt_1	PF00133.22	5.7e-171	1	2
ENSUMAP00000019106	tRNA-synt_1	PF00133.22	5.7e-171	2	2
ENSUMAP00000019114	tRNA-synt_1	PF00133.22	9e-171	1	2
ENSUMAP00000019114	tRNA-synt_1	PF00133.22	9e-171	2	2
ENSUMAP00000019147	tRNA-synt_1	PF00133.22	7.7e-170	1	2
ENSUMAP00000019147	tRNA-synt_1	PF00133.22	7.7e-170	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000022606	VARS-201	3633	-	ENSUMAP00000019106	1210 (aa)	-	-
ENSUMAT00000022614	VARS-202	3627	-	ENSUMAP00000019114	1208 (aa)	-	-
ENSUMAT00000022655	VARS-203	3480	-	ENSUMAP00000019147	1159 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000013486's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000013486's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000013486	VARS	78	56.298	ENSUMAG00000019894	VARS2	83	61.032

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000013486	VARS	98	94.286	ENSG00000204394	VARS	100	98.851	Homo_sapiens
ENSUMAG00000013486	VARS	98	59.348	ENSAPOG00000020921	vars	99	59.080	Acanthochromis_polyacanthus
ENSUMAG00000013486	VARS	98	59.348	ENSAPOG00000020691	vars	99	59.080	Acanthochromis_polyacanthus
ENSUMAG00000013486	VARS	98	98.574	ENSAMEG00000006417	VARS	93	98.574	Ailuropoda_melanoleuca
ENSUMAG00000013486	VARS	98	64.678	ENSACIG00000013752	vars	100	59.876	Amphilophus_citrinellus
ENSUMAG00000013486	VARS	100	60.016	ENSAOCG00000002447	vars	100	58.938	Amphiprion_ocellaris
ENSUMAG00000013486	VARS	100	60.094	ENSAPEG00000010638	vars	99	59.860	Amphiprion_percula
ENSUMAG00000013486	VARS	100	58.740	ENSATEG00000020219	vars	100	58.451	Anabas_testudineus
ENSUMAG00000013486	VARS	92	63.345	ENSACAG00000029133	-	100	66.088	Anolis_carolinensis
ENSUMAG00000013486	VARS	98	93.968	ENSANAG00000015453	VARS	93	94.444	Aotus_nancymaae
ENSUMAG00000013486	VARS	98	64.253	ENSACLG00000025699	vars	97	59.182	Astatotilapia_calliptera
ENSUMAG00000013486	VARS	93	62.738	ENSAMXG00000017716	vars	95	60.463	Astyanax_mexicanus
ENSUMAG00000013486	VARS	98	95.238	ENSBTAG00000005631	VARS	93	95.714	Bos_taurus
ENSUMAG00000013486	VARS	98	94.127	ENSCJAG00000002604	VARS	93	94.603	Callithrix_jacchus
ENSUMAG00000013486	VARS	98	96.032	ENSCAFG00000000636	VARS	93	96.032	Canis_familiaris
ENSUMAG00000013486	VARS	92	96.110	ENSCAFG00020020790	VARS	86	96.110	Canis_lupus_dingo
ENSUMAG00000013486	VARS	98	95.079	ENSCHIG00000011008	VARS	93	95.556	Capra_hircus
ENSUMAG00000013486	VARS	98	94.921	ENSTSYG00000001567	VARS	93	95.397	Carlito_syrichta
ENSUMAG00000013486	VARS	88	88.889	ENSCAPG00000013736	VARS	92	88.697	Cavia_aperea
ENSUMAG00000013486	VARS	98	91.111	ENSCPOG00000000870	VARS	93	90.952	Cavia_porcellus
ENSUMAG00000013486	VARS	98	94.127	ENSCCAG00000035656	VARS	93	94.603	Cebus_capucinus
ENSUMAG00000013486	VARS	98	94.921	ENSCATG00000022394	VARS	93	94.762	Cercocebus_atys
ENSUMAG00000013486	VARS	85	90.837	ENSCLAG00000009470	VARS	85	90.637	Chinchilla_lanigera
ENSUMAG00000013486	VARS	98	94.762	ENSCSAG00000008784	VARS	93	94.603	Chlorocebus_sabaeus
ENSUMAG00000013486	VARS	75	83.188	ENSCPBG00000007943	VARS	87	83.776	Chrysemys_picta_bellii
ENSUMAG00000013486	VARS	98	94.762	ENSCANG00000033570	VARS	93	94.603	Colobus_angolensis_palliatus
ENSUMAG00000013486	VARS	98	91.270	ENSCGRG00001005686	Vars	93	91.746	Cricetulus_griseus_chok1gshd
ENSUMAG00000013486	VARS	89	84.717	ENSCGRG00000013352	Vars	72	85.283	Cricetulus_griseus_crigri
ENSUMAG00000013486	VARS	100	58.934	ENSCSEG00000019652	vars	100	59.084	Cynoglossus_semilaevis
ENSUMAG00000013486	VARS	98	64.195	ENSCVAG00000022398	vars	100	60.125	Cyprinodon_variegatus
ENSUMAG00000013486	VARS	98	64.973	ENSDARG00000044575	vars	100	59.548	Danio_rerio
ENSUMAG00000013486	VARS	81	91.449	ENSDORG00000016433	Vars	87	91.449	Dipodomys_ordii
ENSUMAG00000013486	VARS	65	91.506	ENSETEG00000003824	VARS	70	91.473	Echinops_telfairi
ENSUMAG00000013486	VARS	53	68.539	ENSEBUG00000004637	vars	88	68.539	Eptatretus_burgeri
ENSUMAG00000013486	VARS	52	69.903	ENSEBUG00000007086	vars	73	69.903	Eptatretus_burgeri
ENSUMAG00000013486	VARS	98	96.667	ENSEASG00005015673	VARS	93	96.667	Equus_asinus_asinus
ENSUMAG00000013486	VARS	98	96.825	ENSECAG00000014620	VARS	93	96.825	Equus_caballus
ENSUMAG00000013486	VARS	78	97.030	ENSEEUG00000004116	VARS	73	97.030	Erinaceus_europaeus
ENSUMAG00000013486	VARS	100	59.568	ENSELUG00000006550	vars	97	59.537	Esox_lucius
ENSUMAG00000013486	VARS	98	96.984	ENSFCAG00000004510	VARS	93	96.984	Felis_catus
ENSUMAG00000013486	VARS	81	93.143	ENSFDAG00000011401	VARS	91	93.143	Fukomys_damarensis
ENSUMAG00000013486	VARS	98	64.599	ENSFHEG00000010672	vars	100	60.280	Fundulus_heteroclitus
ENSUMAG00000013486	VARS	92	60.902	ENSGMOG00000014908	vars	97	61.069	Gadus_morhua
ENSUMAG00000013486	VARS	98	64.557	ENSGAFG00000021630	vars	100	60.483	Gambusia_affinis
ENSUMAG00000013486	VARS	92	60.921	ENSGACG00000009601	vars	98	60.483	Gasterosteus_aculeatus
ENSUMAG00000013486	VARS	54	64.724	ENSGAGG00000006508	-	91	64.724	Gopherus_agassizii
ENSUMAG00000013486	VARS	98	94.286	ENSGGOG00000011364	VARS	93	94.762	Gorilla_gorilla
ENSUMAG00000013486	VARS	98	64.253	ENSHBUG00000017151	vars	97	59.182	Haplochromis_burtoni
ENSUMAG00000013486	VARS	98	91.111	ENSHGLG00000011646	VARS	93	90.952	Heterocephalus_glaber_female
ENSUMAG00000013486	VARS	93	81.126	ENSHGLG00100018062	VARS	100	80.796	Heterocephalus_glaber_male
ENSUMAG00000013486	VARS	98	63.669	ENSHCOG00000012198	vars	99	59.953	Hippocampus_comes
ENSUMAG00000013486	VARS	100	60.623	ENSIPUG00000005218	vars	100	60.545	Ictalurus_punctatus
ENSUMAG00000013486	VARS	100	85.308	ENSSTOG00000013112	VARS	100	85.466	Ictidomys_tridecemlineatus
ENSUMAG00000013486	VARS	98	91.270	ENSJJAG00000019749	-	93	90.952	Jaculus_jaculus
ENSUMAG00000013486	VARS	100	66.988	ENSJJAG00000015343	-	100	67.390	Jaculus_jaculus
ENSUMAG00000013486	VARS	100	59.579	ENSKMAG00000009455	vars	100	59.655	Kryptolebias_marmoratus
ENSUMAG00000013486	VARS	100	58.057	ENSLBEG00000010341	vars	100	58.768	Labrus_bergylta
ENSUMAG00000013486	VARS	92	71.854	ENSLACG00000015232	VARS	88	73.223	Latimeria_chalumnae
ENSUMAG00000013486	VARS	100	61.154	ENSLOCG00000004240	vars	100	61.154	Lepisosteus_oculatus
ENSUMAG00000013486	VARS	98	95.238	ENSLAFG00000023090	VARS	93	94.921	Loxodonta_africana
ENSUMAG00000013486	VARS	98	94.762	ENSMFAG00000001032	VARS	93	94.603	Macaca_fascicularis
ENSUMAG00000013486	VARS	98	94.762	ENSMMUG00000006828	VARS	93	94.603	Macaca_mulatta
ENSUMAG00000013486	VARS	98	94.603	ENSMNEG00000042072	VARS	93	94.444	Macaca_nemestrina
ENSUMAG00000013486	VARS	98	94.762	ENSMLEG00000039307	VARS	93	94.603	Mandrillus_leucophaeus
ENSUMAG00000013486	VARS	100	59.782	ENSMAMG00000003949	vars	100	59.782	Mastacembelus_armatus
ENSUMAG00000013486	VARS	98	64.253	ENSMZEG00005018327	vars	100	59.230	Maylandia_zebra
ENSUMAG00000013486	VARS	98	91.905	ENSMAUG00000006715	Vars	93	92.381	Mesocricetus_auratus
ENSUMAG00000013486	VARS	100	85.296	ENSMICG00000003548	VARS	100	85.217	Microcebus_murinus
ENSUMAG00000013486	VARS	98	86.289	ENSMOCG00000015404	Vars	93	86.289	Microtus_ochrogaster
ENSUMAG00000013486	VARS	100	58.988	ENSMMOG00000015801	vars	100	58.833	Mola_mola
ENSUMAG00000013486	VARS	98	85.714	ENSMODG00000015204	-	93	85.873	Monodelphis_domestica
ENSUMAG00000013486	VARS	99	59.533	ENSMALG00000022532	vars	99	59.377	Monopterus_albus
ENSUMAG00000013486	VARS	98	92.063	MGP_CAROLIEiJ_G0021491	Vars	93	91.746	Mus_caroli
ENSUMAG00000013486	VARS	98	92.063	ENSMUSG00000007029	Vars	93	91.746	Mus_musculus
ENSUMAG00000013486	VARS	98	91.587	MGP_PahariEiJ_G0020486	Vars	93	91.429	Mus_pahari
ENSUMAG00000013486	VARS	98	92.063	MGP_SPRETEiJ_G0022396	Vars	93	91.746	Mus_spretus
ENSUMAG00000013486	VARS	98	97.143	ENSMPUG00000010821	VARS	93	97.143	Mustela_putorius_furo
ENSUMAG00000013486	VARS	78	97.037	ENSMLUG00000013126	VARS	91	97.037	Myotis_lucifugus
ENSUMAG00000013486	VARS	98	91.111	ENSNGAG00000012151	Vars	93	92.063	Nannospalax_galili
ENSUMAG00000013486	VARS	98	63.945	ENSNBRG00000020520	vars	100	59.028	Neolamprologus_brichardi
ENSUMAG00000013486	VARS	98	93.333	ENSNLEG00000006351	VARS	93	93.810	Nomascus_leucogenys
ENSUMAG00000013486	VARS	93	89.076	ENSMEUG00000011378	VARS	88	88.611	Notamacropus_eugenii
ENSUMAG00000013486	VARS	98	93.492	ENSOPRG00000003607	VARS	93	93.968	Ochotona_princeps
ENSUMAG00000013486	VARS	98	89.524	ENSODEG00000017681	VARS	93	89.365	Octodon_degus
ENSUMAG00000013486	VARS	98	64.476	ENSONIG00000013064	vars	92	71.400	Oreochromis_niloticus
ENSUMAG00000013486	VARS	77	84.426	ENSOANG00000005400	VARS	89	84.426	Ornithorhynchus_anatinus
ENSUMAG00000013486	VARS	98	89.082	ENSOCUG00000022463	VARS	93	89.557	Oryctolagus_cuniculus
ENSUMAG00000013486	VARS	98	64.014	ENSORLG00000013063	vars	100	59.722	Oryzias_latipes
ENSUMAG00000013486	VARS	98	64.557	ENSORLG00020003504	vars	100	60.201	Oryzias_latipes_hni
ENSUMAG00000013486	VARS	98	64.195	ENSORLG00015009001	vars	100	60.202	Oryzias_latipes_hsok
ENSUMAG00000013486	VARS	98	64.014	ENSOMEG00000015016	vars	100	59.861	Oryzias_melastigma
ENSUMAG00000013486	VARS	98	92.698	ENSOGAG00000007515	VARS	93	93.175	Otolemur_garnettii
ENSUMAG00000013486	VARS	51	91.667	ENSOARG00000004625	-	86	92.177	Ovis_aries
ENSUMAG00000013486	VARS	98	94.444	ENSPPAG00000034012	VARS	93	94.921	Pan_paniscus
ENSUMAG00000013486	VARS	98	96.825	ENSPPRG00000014855	VARS	93	96.825	Panthera_pardus
ENSUMAG00000013486	VARS	84	97.712	ENSPTIG00000010462	VARS	88	96.364	Panthera_tigris_altaica
ENSUMAG00000013486	VARS	98	94.444	ENSPTRG00000017985	VARS	93	94.921	Pan_troglodytes
ENSUMAG00000013486	VARS	98	91.483	ENSPANG00000014565	VARS	93	91.325	Papio_anubis
ENSUMAG00000013486	VARS	100	59.119	ENSPKIG00000016304	vars	100	58.964	Paramormyrops_kingsleyae
ENSUMAG00000013486	VARS	100	60.156	ENSPMGG00000023909	vars	100	60.156	Periophthalmus_magnuspinnatus
ENSUMAG00000013486	VARS	98	92.857	ENSPEMG00000006639	Vars	93	93.333	Peromyscus_maniculatus_bairdii
ENSUMAG00000013486	VARS	98	86.190	ENSPCIG00000018553	VARS	93	86.508	Phascolarctos_cinereus
ENSUMAG00000013486	VARS	100	60.873	ENSPFOG00000015690	vars	100	60.717	Poecilia_formosa
ENSUMAG00000013486	VARS	98	64.976	ENSPLAG00000009590	vars	100	60.717	Poecilia_latipinna
ENSUMAG00000013486	VARS	100	60.873	ENSPMEG00000004708	vars	100	60.717	Poecilia_mexicana
ENSUMAG00000013486	VARS	100	58.626	ENSPREG00000013264	vars	100	58.548	Poecilia_reticulata
ENSUMAG00000013486	VARS	98	94.127	ENSPPYG00000016460	VARS	93	94.603	Pongo_abelii
ENSUMAG00000013486	VARS	89	88.593	ENSPCAG00000013565	VARS	85	87.833	Procavia_capensis
ENSUMAG00000013486	VARS	100	85.850	ENSPCOG00000010942	VARS	100	85.850	Propithecus_coquereli
ENSUMAG00000013486	VARS	98	89.365	ENSPVAG00000012403	VARS	93	89.206	Pteropus_vampyrus
ENSUMAG00000013486	VARS	98	64.253	ENSPNYG00000022511	vars	100	59.182	Pundamilia_nyererei
ENSUMAG00000013486	VARS	98	65.116	ENSPNAG00000020962	vars	100	60.202	Pygocentrus_nattereri
ENSUMAG00000013486	VARS	98	92.222	ENSRNOG00000000867	Vars	93	92.698	Rattus_norvegicus
ENSUMAG00000013486	VARS	98	95.079	ENSRBIG00000041669	VARS	93	94.921	Rhinopithecus_bieti
ENSUMAG00000013486	VARS	98	95.079	ENSRROG00000045490	VARS	93	94.921	Rhinopithecus_roxellana
ENSUMAG00000013486	VARS	98	93.651	ENSSBOG00000035402	VARS	93	94.127	Saimiri_boliviensis_boliviensis
ENSUMAG00000013486	VARS	98	78.611	ENSSHAG00000006937	VARS	100	71.892	Sarcophilus_harrisii
ENSUMAG00000013486	VARS	98	62.769	ENSSFOG00015014272	vars	100	59.101	Scleropages_formosus
ENSUMAG00000013486	VARS	100	59.098	ENSSMAG00000009596	vars	99	58.942	Scophthalmus_maximus
ENSUMAG00000013486	VARS	100	59.487	ENSSDUG00000014177	vars	100	59.179	Seriola_dumerili
ENSUMAG00000013486	VARS	100	59.331	ENSSLDG00000025316	vars	100	59.253	Seriola_lalandi_dorsalis
ENSUMAG00000013486	VARS	98	64.596	ENSSPAG00000017068	vars	100	59.938	Stegastes_partitus
ENSUMAG00000013486	VARS	98	94.921	ENSSSCG00000038950	VARS	93	94.921	Sus_scrofa
ENSUMAG00000013486	VARS	83	62.720	ENSTRUG00000012307	vars	96	62.451	Takifugu_rubripes
ENSUMAG00000013486	VARS	100	59.550	ENSTNIG00000008011	vars	100	59.436	Tetraodon_nigroviridis
ENSUMAG00000013486	VARS	52	97.253	ENSTBEG00000004728	-	53	97.268	Tupaia_belangeri
ENSUMAG00000013486	VARS	98	87.386	ENSTTRG00000014128	VARS	93	87.386	Tursiops_truncatus
ENSUMAG00000013486	VARS	99	96.947	ENSUAMG00000010424	VARS	100	92.277	Ursus_americanus
ENSUMAG00000013486	VARS	98	96.667	ENSVVUG00000021323	VARS	93	96.667	Vulpes_vulpes
ENSUMAG00000013486	VARS	96	56.858	ENSXETG00000024076	vars	98	56.858	Xenopus_tropicalis
ENSUMAG00000013486	VARS	100	59.672	ENSXCOG00000019172	vars	100	59.906	Xiphophorus_couchianus
ENSUMAG00000013486	VARS	100	60.561	ENSXMAG00000010927	vars	100	60.405	Xiphophorus_maculatus