EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000013625 (Gene tree)
Gene ID: 103678392
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 105823 bases
Position: chrKK498530.1:17226492-17332314
Accession: 103678392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000018589	XRN_N	PF03159.18	4.2e-96	1	1
ENSUMAP00000018570	XRN_N	PF03159.18	4.4e-96	1	1
ENSUMAP00000018560	XRN_N	PF03159.18	4.4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000021963	XRN1-202	5442	-	ENSUMAP00000018570	1732 (aa)	XP_008705963	UPI0004DFFDC4
ENSUMAT00000021953	XRN1-201	5481	XM_008707732	ENSUMAP00000018560	1745 (aa)	XP_008705954	UPI0004DFF71C
ENSUMAT00000021986	XRN1-203	5370	-	ENSUMAP00000018589	1708 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000013625's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03008	Ribosome biogenesis in eukaryotes	KEGG
umr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000013625's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000013625	XRN1	100	94.204	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSUMAG00000013625	XRN1	95	73.208	ENSAPOG00000000622	xrn1	93	76.972	Acanthochromis_polyacanthus
ENSUMAG00000013625	XRN1	100	98.444	ENSAMEG00000012538	XRN1	100	98.444	Ailuropoda_melanoleuca
ENSUMAG00000013625	XRN1	95	72.646	ENSACIG00000001057	xrn1	93	72.602	Amphilophus_citrinellus
ENSUMAG00000013625	XRN1	95	70.414	ENSAOCG00000014097	xrn1	86	85.246	Amphiprion_ocellaris
ENSUMAG00000013625	XRN1	100	60.726	ENSAPEG00000006620	xrn1	91	72.632	Amphiprion_percula
ENSUMAG00000013625	XRN1	94	71.281	ENSATEG00000009752	xrn1	99	71.190	Anabas_testudineus
ENSUMAG00000013625	XRN1	99	77.391	ENSAPLG00000004905	XRN1	100	76.928	Anas_platyrhynchos
ENSUMAG00000013625	XRN1	100	73.622	ENSACAG00000004985	XRN1	100	73.172	Anolis_carolinensis
ENSUMAG00000013625	XRN1	100	94.204	ENSANAG00000029013	XRN1	99	96.293	Aotus_nancymaae
ENSUMAG00000013625	XRN1	100	60.112	ENSACLG00000004806	xrn1	96	61.583	Astatotilapia_calliptera
ENSUMAG00000013625	XRN1	99	60.423	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSUMAG00000013625	XRN1	100	94.731	ENSBTAG00000011524	XRN1	100	94.555	Bos_taurus
ENSUMAG00000013625	XRN1	70	39.041	WBGene00012730	xrn-1	80	39.299	Caenorhabditis_elegans
ENSUMAG00000013625	XRN1	100	93.794	ENSCJAG00000001872	XRN1	100	93.794	Callithrix_jacchus
ENSUMAG00000013625	XRN1	100	98.095	ENSCAFG00000007783	XRN1	100	98.095	Canis_familiaris
ENSUMAG00000013625	XRN1	100	98.095	ENSCAFG00020009120	XRN1	99	99.701	Canis_lupus_dingo
ENSUMAG00000013625	XRN1	99	94.509	ENSCHIG00000019192	XRN1	99	94.335	Capra_hircus
ENSUMAG00000013625	XRN1	100	93.681	ENSTSYG00000002705	XRN1	100	93.681	Carlito_syrichta
ENSUMAG00000013625	XRN1	55	76.617	ENSCAPG00000004604	-	99	76.617	Cavia_aperea
ENSUMAG00000013625	XRN1	100	94.672	ENSCCAG00000034800	XRN1	99	97.464	Cebus_capucinus
ENSUMAG00000013625	XRN1	100	94.672	ENSCATG00000041794	XRN1	100	94.672	Cercocebus_atys
ENSUMAG00000013625	XRN1	100	89.844	ENSCLAG00000001451	XRN1	99	95.880	Chinchilla_lanigera
ENSUMAG00000013625	XRN1	100	94.731	ENSCSAG00000011265	XRN1	100	94.731	Chlorocebus_sabaeus
ENSUMAG00000013625	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSUMAG00000013625	XRN1	70	44.973	ENSCSAVG00000008584	-	98	44.731	Ciona_savignyi
ENSUMAG00000013625	XRN1	100	94.731	ENSCANG00000037495	XRN1	99	98.204	Colobus_angolensis_palliatus
ENSUMAG00000013625	XRN1	100	90.358	ENSCGRG00001019411	Xrn1	99	96.038	Cricetulus_griseus_chok1gshd
ENSUMAG00000013625	XRN1	100	90.358	ENSCGRG00000012464	Xrn1	99	96.038	Cricetulus_griseus_crigri
ENSUMAG00000013625	XRN1	92	67.502	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSUMAG00000013625	XRN1	66	67.368	ENSCVAG00000013089	xrn1	99	72.575	Cyprinodon_variegatus
ENSUMAG00000013625	XRN1	99	62.877	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSUMAG00000013625	XRN1	100	88.218	ENSDORG00000013833	Xrn1	100	88.276	Dipodomys_ordii
ENSUMAG00000013625	XRN1	74	39.752	FBgn0020261	pcm	76	39.506	Drosophila_melanogaster
ENSUMAG00000013625	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSUMAG00000013625	XRN1	100	95.199	ENSEASG00005002687	XRN1	99	98.204	Equus_asinus_asinus
ENSUMAG00000013625	XRN1	100	95.199	ENSECAG00000008301	XRN1	100	95.199	Equus_caballus
ENSUMAG00000013625	XRN1	92	83.382	ENSEEUG00000011323	XRN1	92	83.382	Erinaceus_europaeus
ENSUMAG00000013625	XRN1	100	61.387	ENSELUG00000000169	xrn1	96	62.346	Esox_lucius
ENSUMAG00000013625	XRN1	100	92.861	ENSFCAG00000027589	XRN1	99	97.802	Felis_catus
ENSUMAG00000013625	XRN1	100	75.814	ENSFALG00000007021	XRN1	100	75.084	Ficedula_albicollis
ENSUMAG00000013625	XRN1	100	90.767	ENSFDAG00000020494	XRN1	99	95.404	Fukomys_damarensis
ENSUMAG00000013625	XRN1	84	68.452	ENSGMOG00000006396	xrn1	80	67.950	Gadus_morhua
ENSUMAG00000013625	XRN1	100	76.180	ENSGALG00000002706	XRN1	100	75.730	Gallus_gallus
ENSUMAG00000013625	XRN1	100	60.305	ENSGACG00000014328	xrn1	100	60.237	Gasterosteus_aculeatus
ENSUMAG00000013625	XRN1	95	79.445	ENSGAGG00000017535	XRN1	99	79.024	Gopherus_agassizii
ENSUMAG00000013625	XRN1	100	94.379	ENSGGOG00000008047	XRN1	100	94.379	Gorilla_gorilla
ENSUMAG00000013625	XRN1	94	70.491	ENSHBUG00000005908	xrn1	98	73.361	Haplochromis_burtoni
ENSUMAG00000013625	XRN1	100	91.811	ENSHGLG00000014476	XRN1	99	96.407	Heterocephalus_glaber_female
ENSUMAG00000013625	XRN1	100	91.869	ENSHGLG00100015130	XRN1	99	96.407	Heterocephalus_glaber_male
ENSUMAG00000013625	XRN1	96	71.176	ENSHCOG00000014062	xrn1	97	70.934	Hippocampus_comes
ENSUMAG00000013625	XRN1	99	61.731	ENSIPUG00000015229	xrn1	96	63.317	Ictalurus_punctatus
ENSUMAG00000013625	XRN1	100	94.114	ENSSTOG00000013552	XRN1	99	98.204	Ictidomys_tridecemlineatus
ENSUMAG00000013625	XRN1	99	87.921	ENSJJAG00000010863	Xrn1	99	94.611	Jaculus_jaculus
ENSUMAG00000013625	XRN1	100	59.119	ENSKMAG00000021356	xrn1	94	75.472	Kryptolebias_marmoratus
ENSUMAG00000013625	XRN1	94	70.094	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSUMAG00000013625	XRN1	100	70.364	ENSLACG00000009020	XRN1	97	71.209	Latimeria_chalumnae
ENSUMAG00000013625	XRN1	100	65.770	ENSLOCG00000007944	xrn1	98	65.268	Lepisosteus_oculatus
ENSUMAG00000013625	XRN1	63	96.632	ENSLAFG00000015426	XRN1	100	96.632	Loxodonta_africana
ENSUMAG00000013625	XRN1	100	94.789	ENSMFAG00000032599	XRN1	100	94.789	Macaca_fascicularis
ENSUMAG00000013625	XRN1	100	94.731	ENSMMUG00000014038	XRN1	100	94.731	Macaca_mulatta
ENSUMAG00000013625	XRN1	100	94.555	ENSMNEG00000034217	XRN1	100	94.555	Macaca_nemestrina
ENSUMAG00000013625	XRN1	94	70.843	ENSMAMG00000013219	xrn1	92	78.992	Mastacembelus_armatus
ENSUMAG00000013625	XRN1	100	60.056	ENSMZEG00005015099	xrn1	96	61.561	Maylandia_zebra
ENSUMAG00000013625	XRN1	99	76.204	ENSMGAG00000006333	XRN1	100	75.740	Meleagris_gallopavo
ENSUMAG00000013625	XRN1	100	94.393	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSUMAG00000013625	XRN1	57	94.770	ENSMOCG00000008665	Xrn1	99	94.770	Microtus_ochrogaster
ENSUMAG00000013625	XRN1	100	82.741	ENSMODG00000021236	XRN1	100	82.332	Monodelphis_domestica
ENSUMAG00000013625	XRN1	94	66.901	ENSMALG00000004098	xrn1	98	66.719	Monopterus_albus
ENSUMAG00000013625	XRN1	96	94.945	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSUMAG00000013625	XRN1	100	88.915	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSUMAG00000013625	XRN1	100	88.799	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSUMAG00000013625	XRN1	100	88.915	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSUMAG00000013625	XRN1	100	97.658	ENSMPUG00000012040	XRN1	100	97.658	Mustela_putorius_furo
ENSUMAG00000013625	XRN1	100	92.787	ENSMLUG00000016885	XRN1	100	92.614	Myotis_lucifugus
ENSUMAG00000013625	XRN1	57	91.714	ENSNGAG00000023964	Xrn1	99	91.733	Nannospalax_galili
ENSUMAG00000013625	XRN1	100	94.496	ENSNLEG00000004726	XRN1	100	94.496	Nomascus_leucogenys
ENSUMAG00000013625	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSUMAG00000013625	XRN1	79	84.640	ENSOPRG00000007337	-	78	84.640	Ochotona_princeps
ENSUMAG00000013625	XRN1	100	61.364	ENSONIG00000016673	xrn1	99	64.861	Oreochromis_niloticus
ENSUMAG00000013625	XRN1	92	77.904	ENSOANG00000006735	XRN1	100	77.715	Ornithorhynchus_anatinus
ENSUMAG00000013625	XRN1	100	92.726	ENSOCUG00000001861	XRN1	100	92.554	Oryctolagus_cuniculus
ENSUMAG00000013625	XRN1	94	72.378	ENSORLG00000013005	xrn1	93	72.698	Oryzias_latipes
ENSUMAG00000013625	XRN1	94	72.713	ENSORLG00020005559	xrn1	93	72.698	Oryzias_latipes_hni
ENSUMAG00000013625	XRN1	100	60.977	ENSORLG00015022523	xrn1	89	72.538	Oryzias_latipes_hsok
ENSUMAG00000013625	XRN1	96	72.927	ENSOMEG00000015397	xrn1	100	73.127	Oryzias_melastigma
ENSUMAG00000013625	XRN1	100	91.106	ENSOGAG00000000170	XRN1	100	91.106	Otolemur_garnettii
ENSUMAG00000013625	XRN1	99	95.252	ENSOARG00000006343	XRN1	99	95.076	Ovis_aries
ENSUMAG00000013625	XRN1	100	94.379	ENSPPAG00000010180	XRN1	100	94.379	Pan_paniscus
ENSUMAG00000013625	XRN1	100	96.314	ENSPPRG00000007125	XRN1	100	96.314	Panthera_pardus
ENSUMAG00000013625	XRN1	100	96.372	ENSPTIG00000021081	XRN1	100	96.372	Panthera_tigris_altaica
ENSUMAG00000013625	XRN1	100	94.438	ENSPTRG00000015482	XRN1	100	94.438	Pan_troglodytes
ENSUMAG00000013625	XRN1	100	94.614	ENSPANG00000010638	XRN1	100	94.614	Papio_anubis
ENSUMAG00000013625	XRN1	100	77.968	ENSPSIG00000018050	XRN1	100	77.854	Pelodiscus_sinensis
ENSUMAG00000013625	XRN1	56	77.865	ENSPMGG00000002648	xrn1	98	78.336	Periophthalmus_magnuspinnatus
ENSUMAG00000013625	XRN1	56	95.721	ENSPEMG00000020610	Xrn1	99	95.721	Peromyscus_maniculatus_bairdii
ENSUMAG00000013625	XRN1	65	50.337	ENSPMAG00000002975	xrn1	91	78.161	Petromyzon_marinus
ENSUMAG00000013625	XRN1	95	88.082	ENSPCIG00000028735	XRN1	99	90.106	Phascolarctos_cinereus
ENSUMAG00000013625	XRN1	90	64.891	ENSPFOG00000013932	xrn1	99	65.106	Poecilia_formosa
ENSUMAG00000013625	XRN1	90	63.706	ENSPLAG00000021653	xrn1	99	64.317	Poecilia_latipinna
ENSUMAG00000013625	XRN1	88	64.309	ENSPMEG00000003076	xrn1	95	64.637	Poecilia_mexicana
ENSUMAG00000013625	XRN1	96	69.819	ENSPREG00000021147	xrn1	99	69.740	Poecilia_reticulata
ENSUMAG00000013625	XRN1	100	94.262	ENSPPYG00000014172	XRN1	100	94.262	Pongo_abelii
ENSUMAG00000013625	XRN1	90	82.383	ENSPCAG00000005638	XRN1	99	82.414	Procavia_capensis
ENSUMAG00000013625	XRN1	100	94.441	ENSPCOG00000013089	XRN1	99	98.503	Propithecus_coquereli
ENSUMAG00000013625	XRN1	96	93.241	ENSPVAG00000016265	XRN1	96	93.241	Pteropus_vampyrus
ENSUMAG00000013625	XRN1	94	71.598	ENSPNYG00000010570	xrn1	93	71.440	Pundamilia_nyererei
ENSUMAG00000013625	XRN1	99	60.629	ENSPNAG00000023531	xrn1	97	61.206	Pygocentrus_nattereri
ENSUMAG00000013625	XRN1	100	89.607	ENSRNOG00000042951	Xrn1	100	89.492	Rattus_norvegicus
ENSUMAG00000013625	XRN1	100	94.087	ENSRBIG00000041227	XRN1	100	94.087	Rhinopithecus_bieti
ENSUMAG00000013625	XRN1	66	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSUMAG00000013625	XRN1	100	93.970	ENSSBOG00000029561	XRN1	100	93.970	Saimiri_boliviensis_boliviensis
ENSUMAG00000013625	XRN1	99	82.318	ENSSHAG00000016207	XRN1	100	81.845	Sarcophilus_harrisii
ENSUMAG00000013625	XRN1	100	61.083	ENSSFOG00015024211	xrn1	97	62.301	Scleropages_formosus
ENSUMAG00000013625	XRN1	93	72.213	ENSSMAG00000016534	xrn1	94	72.132	Scophthalmus_maximus
ENSUMAG00000013625	XRN1	90	72.498	ENSSDUG00000010306	xrn1	91	72.498	Seriola_dumerili
ENSUMAG00000013625	XRN1	94	71.975	ENSSLDG00000021543	xrn1	96	71.975	Seriola_lalandi_dorsalis
ENSUMAG00000013625	XRN1	67	85.537	ENSSARG00000007741	-	83	85.537	Sorex_araneus
ENSUMAG00000013625	XRN1	100	77.436	ENSTGUG00000008498	XRN1	100	76.856	Taeniopygia_guttata
ENSUMAG00000013625	XRN1	94	69.904	ENSTRUG00000004895	xrn1	96	77.244	Takifugu_rubripes
ENSUMAG00000013625	XRN1	96	68.358	ENSTNIG00000017615	xrn1	96	60.276	Tetraodon_nigroviridis
ENSUMAG00000013625	XRN1	85	97.035	ENSTBEG00000003256	XRN1	84	97.035	Tupaia_belangeri
ENSUMAG00000013625	XRN1	100	91.628	ENSTTRG00000012914	XRN1	100	91.628	Tursiops_truncatus
ENSUMAG00000013625	XRN1	100	98.037	ENSUAMG00000001608	XRN1	99	99.701	Ursus_americanus
ENSUMAG00000013625	XRN1	100	92.799	ENSVPAG00000004690	XRN1	100	92.799	Vicugna_pacos
ENSUMAG00000013625	XRN1	100	98.302	ENSVVUG00000024461	XRN1	99	99.701	Vulpes_vulpes
ENSUMAG00000013625	XRN1	100	68.924	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSUMAG00000013625	XRN1	94	72.698	ENSXCOG00000007917	xrn1	92	72.698	Xiphophorus_couchianus
ENSUMAG00000013625	XRN1	92	72.046	ENSXMAG00000018320	xrn1	92	72.127	Xiphophorus_maculatus