EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000013993 (Gene tree)
Gene ID: 103664269
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 98184 bases
Position: chrKK498601.1:771044-869227
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000019045	RRM_1	PF00076.22	1e-32	1	2
ENSUMAP00000019045	RRM_1	PF00076.22	1e-32	2	2
ENSUMAP00000019047	RRM_1	PF00076.22	2.7e-32	1	2
ENSUMAP00000019047	RRM_1	PF00076.22	2.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000022535	PSPC1-201	1700	-	ENSUMAP00000019045	357 (aa)	-	-
ENSUMAT00000022537	PSPC1-202	2090	-	ENSUMAP00000019047	487 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000013993's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000013993's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000013993	PSPC1	66	71.429	ENSUMAG00000008056	-	79	64.685
ENSUMAG00000013993	PSPC1	95	60.173	ENSUMAG00000021550	NONO	80	67.018

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000013993	PSPC1	100	98.973	ENSG00000121390	PSPC1	93	98.973	Homo_sapiens
ENSUMAG00000013993	PSPC1	91	80.864	ENSAPOG00000015946	pspc1	84	70.678	Acanthochromis_polyacanthus
ENSUMAG00000013993	PSPC1	100	99.795	ENSAMEG00000017420	PSPC1	93	99.795	Ailuropoda_melanoleuca
ENSUMAG00000013993	PSPC1	91	71.605	ENSACIG00000018695	pspc1	87	59.448	Amphilophus_citrinellus
ENSUMAG00000013993	PSPC1	91	80.247	ENSAOCG00000005279	pspc1	83	70.241	Amphiprion_ocellaris
ENSUMAG00000013993	PSPC1	91	80.247	ENSAPEG00000015927	pspc1	84	70.241	Amphiprion_percula
ENSUMAG00000013993	PSPC1	91	67.284	ENSATEG00000004878	pspc1	76	62.110	Anabas_testudineus
ENSUMAG00000013993	PSPC1	89	75.472	ENSAPLG00000003643	SFPQ	69	68.852	Anas_platyrhynchos
ENSUMAG00000013993	PSPC1	83	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSUMAG00000013993	PSPC1	91	96.319	ENSACAG00000002093	PSPC1	93	88.032	Anolis_carolinensis
ENSUMAG00000013993	PSPC1	80	70.383	ENSACAG00000013307	-	56	64.641	Anolis_carolinensis
ENSUMAG00000013993	PSPC1	100	98.357	ENSANAG00000000059	PSPC1	93	98.357	Aotus_nancymaae
ENSUMAG00000013993	PSPC1	91	71.692	ENSACLG00000027220	pspc1	87	58.672	Astatotilapia_calliptera
ENSUMAG00000013993	PSPC1	90	79.268	ENSAMXG00000036881	pspc1	85	70.259	Astyanax_mexicanus
ENSUMAG00000013993	PSPC1	100	96.509	ENSBTAG00000003934	PSPC1	94	96.509	Bos_taurus
ENSUMAG00000013993	PSPC1	100	98.357	ENSCJAG00000004554	PSPC1	93	98.357	Callithrix_jacchus
ENSUMAG00000013993	PSPC1	100	99.384	ENSCAFG00020002009	PSPC1	93	99.384	Canis_lupus_dingo
ENSUMAG00000013993	PSPC1	100	96.509	ENSCHIG00000016708	PSPC1	94	96.509	Capra_hircus
ENSUMAG00000013993	PSPC1	82	91.791	ENSTSYG00000032882	PSPC1	93	85.511	Carlito_syrichta
ENSUMAG00000013993	PSPC1	100	97.331	ENSCPOG00000000395	PSPC1	94	97.331	Cavia_porcellus
ENSUMAG00000013993	PSPC1	100	98.357	ENSCCAG00000033498	PSPC1	93	98.357	Cebus_capucinus
ENSUMAG00000013993	PSPC1	100	98.563	ENSCATG00000036434	PSPC1	97	98.857	Cercocebus_atys
ENSUMAG00000013993	PSPC1	95	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSUMAG00000013993	PSPC1	96	97.093	ENSCHOG00000008913	PSPC1	93	90.760	Choloepus_hoffmanni
ENSUMAG00000013993	PSPC1	96	94.004	ENSCPBG00000020859	PSPC1	89	94.004	Chrysemys_picta_bellii
ENSUMAG00000013993	PSPC1	86	58.442	ENSCSAVG00000003533	-	59	57.097	Ciona_savignyi
ENSUMAG00000013993	PSPC1	73	99.618	ENSCANG00000018948	PSPC1	87	99.618	Colobus_angolensis_palliatus
ENSUMAG00000013993	PSPC1	100	97.125	ENSCGRG00001018368	Pspc1	93	97.125	Cricetulus_griseus_chok1gshd
ENSUMAG00000013993	PSPC1	100	97.125	ENSCGRG00000011724	Pspc1	93	97.125	Cricetulus_griseus_crigri
ENSUMAG00000013993	PSPC1	89	78.302	ENSCVAG00000007679	-	78	68.246	Cyprinodon_variegatus
ENSUMAG00000013993	PSPC1	97	77.233	ENSDARG00000006621	pspc1	100	66.908	Danio_rerio
ENSUMAG00000013993	PSPC1	100	96.715	ENSDNOG00000011078	PSPC1	93	96.715	Dasypus_novemcinctus
ENSUMAG00000013993	PSPC1	100	93.840	ENSDORG00000016050	Pspc1	93	93.840	Dipodomys_ordii
ENSUMAG00000013993	PSPC1	59	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSUMAG00000013993	PSPC1	90	73.006	ENSEBUG00000003964	-	62	71.965	Eptatretus_burgeri
ENSUMAG00000013993	PSPC1	87	45.536	ENSEBUG00000010133	pspc1	80	47.869	Eptatretus_burgeri
ENSUMAG00000013993	PSPC1	100	98.357	ENSEASG00005000119	PSPC1	93	98.357	Equus_asinus_asinus
ENSUMAG00000013993	PSPC1	100	98.357	ENSECAG00000017286	PSPC1	93	98.357	Equus_caballus
ENSUMAG00000013993	PSPC1	82	86.641	ENSEEUG00000011288	-	81	83.274	Erinaceus_europaeus
ENSUMAG00000013993	PSPC1	95	79.240	ENSELUG00000003746	pspc1	82	79.706	Esox_lucius
ENSUMAG00000013993	PSPC1	100	99.440	ENSFCAG00000027841	PSPC1	93	99.384	Felis_catus
ENSUMAG00000013993	PSPC1	96	94.433	ENSFALG00000008750	PSPC1	88	94.433	Ficedula_albicollis
ENSUMAG00000013993	PSPC1	99	95.893	ENSFDAG00000002617	PSPC1	95	95.893	Fukomys_damarensis
ENSUMAG00000013993	PSPC1	81	82.639	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSUMAG00000013993	PSPC1	95	95.022	ENSGALG00000017142	PSPC1	93	91.820	Gallus_gallus
ENSUMAG00000013993	PSPC1	91	77.607	ENSGAFG00000006327	pspc1	67	77.846	Gambusia_affinis
ENSUMAG00000013993	PSPC1	93	72.508	ENSGACG00000014901	pspc1	92	73.112	Gasterosteus_aculeatus
ENSUMAG00000013993	PSPC1	92	72.590	ENSGAGG00000017325	-	58	66.842	Gopherus_agassizii
ENSUMAG00000013993	PSPC1	96	94.004	ENSGAGG00000019164	PSPC1	89	94.004	Gopherus_agassizii
ENSUMAG00000013993	PSPC1	100	98.768	ENSGGOG00000003414	PSPC1	93	98.768	Gorilla_gorilla
ENSUMAG00000013993	PSPC1	91	79.012	ENSHBUG00000001139	pspc1	87	69.528	Haplochromis_burtoni
ENSUMAG00000013993	PSPC1	100	97.536	ENSHGLG00000018811	PSPC1	94	97.536	Heterocephalus_glaber_female
ENSUMAG00000013993	PSPC1	83	98.990	ENSHGLG00100007962	PSPC1	91	98.990	Heterocephalus_glaber_male
ENSUMAG00000013993	PSPC1	91	74.154	ENSHCOG00000013251	pspc1	83	71.390	Hippocampus_comes
ENSUMAG00000013993	PSPC1	91	83.642	ENSIPUG00000013192	pspc1	92	71.690	Ictalurus_punctatus
ENSUMAG00000013993	PSPC1	100	98.152	ENSSTOG00000026833	PSPC1	93	98.152	Ictidomys_tridecemlineatus
ENSUMAG00000013993	PSPC1	100	97.331	ENSJJAG00000018334	Pspc1	93	97.331	Jaculus_jaculus
ENSUMAG00000013993	PSPC1	95	55.508	ENSKMAG00000013525	-	92	52.096	Kryptolebias_marmoratus
ENSUMAG00000013993	PSPC1	98	75.358	ENSLBEG00000004474	pspc1	79	70.872	Labrus_bergylta
ENSUMAG00000013993	PSPC1	94	85.371	ENSLACG00000010762	PSPC1	88	84.914	Latimeria_chalumnae
ENSUMAG00000013993	PSPC1	95	84.165	ENSLOCG00000010832	pspc1	94	81.628	Lepisosteus_oculatus
ENSUMAG00000013993	PSPC1	100	97.536	ENSLAFG00000010968	PSPC1	93	97.536	Loxodonta_africana
ENSUMAG00000013993	PSPC1	100	98.563	ENSMFAG00000032728	PSPC1	98	98.860	Macaca_fascicularis
ENSUMAG00000013993	PSPC1	100	98.563	ENSMMUG00000020262	PSPC1	95	98.857	Macaca_mulatta
ENSUMAG00000013993	PSPC1	100	98.563	ENSMNEG00000027401	PSPC1	93	98.563	Macaca_nemestrina
ENSUMAG00000013993	PSPC1	82	98.997	ENSMLEG00000039043	PSPC1	94	98.997	Mandrillus_leucophaeus
ENSUMAG00000013993	PSPC1	91	77.778	ENSMAMG00000004333	pspc1	93	60.161	Mastacembelus_armatus
ENSUMAG00000013993	PSPC1	91	71.692	ENSMZEG00005005726	pspc1	87	58.672	Maylandia_zebra
ENSUMAG00000013993	PSPC1	83	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSUMAG00000013993	PSPC1	98	90.000	ENSMAUG00000021067	Pspc1	91	91.315	Mesocricetus_auratus
ENSUMAG00000013993	PSPC1	100	98.152	ENSMICG00000013970	PSPC1	93	98.152	Microcebus_murinus
ENSUMAG00000013993	PSPC1	100	96.920	ENSMOCG00000006060	Pspc1	93	96.920	Microtus_ochrogaster
ENSUMAG00000013993	PSPC1	90	56.347	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSUMAG00000013993	PSPC1	96	97.947	ENSMODG00000008029	PSPC1	73	96.659	Monodelphis_domestica
ENSUMAG00000013993	PSPC1	91	77.160	ENSMALG00000008914	pspc1	85	68.062	Monopterus_albus
ENSUMAG00000013993	PSPC1	100	96.926	MGP_CAROLIEiJ_G0019341	Pspc1	93	96.926	Mus_caroli
ENSUMAG00000013993	PSPC1	100	97.131	ENSMUSG00000021938	Pspc1	93	97.131	Mus_musculus
ENSUMAG00000013993	PSPC1	100	96.926	MGP_PahariEiJ_G0030359	Pspc1	93	96.926	Mus_pahari
ENSUMAG00000013993	PSPC1	100	97.131	MGP_SPRETEiJ_G0020232	Pspc1	93	97.131	Mus_spretus
ENSUMAG00000013993	PSPC1	100	99.384	ENSMPUG00000013347	PSPC1	93	99.384	Mustela_putorius_furo
ENSUMAG00000013993	PSPC1	100	96.939	ENSMLUG00000017663	PSPC1	94	96.939	Myotis_lucifugus
ENSUMAG00000013993	PSPC1	100	97.536	ENSNGAG00000011271	Pspc1	93	97.536	Nannospalax_galili
ENSUMAG00000013993	PSPC1	91	72.308	ENSNBRG00000014059	pspc1	76	68.902	Neolamprologus_brichardi
ENSUMAG00000013993	PSPC1	100	98.768	ENSNLEG00000001294	PSPC1	93	98.768	Nomascus_leucogenys
ENSUMAG00000013993	PSPC1	81	97.156	ENSMEUG00000000476	PSPC1	77	96.364	Notamacropus_eugenii
ENSUMAG00000013993	PSPC1	100	85.626	ENSODEG00000007817	-	93	81.542	Octodon_degus
ENSUMAG00000013993	PSPC1	93	90.691	ENSODEG00000019012	-	94	87.500	Octodon_degus
ENSUMAG00000013993	PSPC1	91	79.321	ENSONIG00000012010	pspc1	87	68.856	Oreochromis_niloticus
ENSUMAG00000013993	PSPC1	95	70.626	ENSOANG00000011381	-	92	68.467	Ornithorhynchus_anatinus
ENSUMAG00000013993	PSPC1	82	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSUMAG00000013993	PSPC1	100	97.947	ENSOCUG00000006153	PSPC1	93	97.947	Oryctolagus_cuniculus
ENSUMAG00000013993	PSPC1	91	78.704	ENSORLG00000004232	-	92	62.035	Oryzias_latipes
ENSUMAG00000013993	PSPC1	91	78.086	ENSORLG00020000578	PSPC1	83	68.481	Oryzias_latipes_hni
ENSUMAG00000013993	PSPC1	91	79.012	ENSORLG00015017480	pspc1	82	68.864	Oryzias_latipes_hsok
ENSUMAG00000013993	PSPC1	59	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSUMAG00000013993	PSPC1	100	98.563	ENSOGAG00000012643	PSPC1	93	98.563	Otolemur_garnettii
ENSUMAG00000013993	PSPC1	94	98.475	ENSOARG00000014163	PSPC1	95	98.475	Ovis_aries
ENSUMAG00000013993	PSPC1	92	99.390	ENSPPAG00000009836	PSPC1	98	94.571	Pan_paniscus
ENSUMAG00000013993	PSPC1	100	99.384	ENSPPRG00000008833	PSPC1	93	99.384	Panthera_pardus
ENSUMAG00000013993	PSPC1	82	99.248	ENSPTIG00000016917	PSPC1	84	99.248	Panthera_tigris_altaica
ENSUMAG00000013993	PSPC1	100	98.039	ENSPTRG00000005677	PSPC1	92	98.889	Pan_troglodytes
ENSUMAG00000013993	PSPC1	100	98.768	ENSPANG00000001992	PSPC1	96	99.145	Papio_anubis
ENSUMAG00000013993	PSPC1	92	83.537	ENSPKIG00000003578	pspc1	81	77.189	Paramormyrops_kingsleyae
ENSUMAG00000013993	PSPC1	96	94.004	ENSPSIG00000005168	PSPC1	89	94.004	Pelodiscus_sinensis
ENSUMAG00000013993	PSPC1	86	70.159	ENSPMGG00000015135	pspc1	86	70.064	Periophthalmus_magnuspinnatus
ENSUMAG00000013993	PSPC1	100	97.536	ENSPEMG00000015214	Pspc1	93	97.536	Peromyscus_maniculatus_bairdii
ENSUMAG00000013993	PSPC1	78	44.558	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSUMAG00000013993	PSPC1	100	96.920	ENSPCIG00000017680	PSPC1	93	96.920	Phascolarctos_cinereus
ENSUMAG00000013993	PSPC1	97	73.407	ENSPFOG00000003362	pspc1	94	65.545	Poecilia_formosa
ENSUMAG00000013993	PSPC1	84	67.774	ENSPLAG00000004407	-	53	59.947	Poecilia_latipinna
ENSUMAG00000013993	PSPC1	97	73.407	ENSPLAG00000011540	pspc1	93	65.545	Poecilia_latipinna
ENSUMAG00000013993	PSPC1	83	68.581	ENSPMEG00000001025	-	51	60.484	Poecilia_mexicana
ENSUMAG00000013993	PSPC1	97	72.853	ENSPMEG00000008322	pspc1	93	65.149	Poecilia_mexicana
ENSUMAG00000013993	PSPC1	97	72.576	ENSPREG00000007786	pspc1	93	65.149	Poecilia_reticulata
ENSUMAG00000013993	PSPC1	100	98.563	ENSPPYG00000005186	PSPC1	93	98.563	Pongo_abelii
ENSUMAG00000013993	PSPC1	70	99.379	ENSPCAG00000008314	-	60	99.387	Procavia_capensis
ENSUMAG00000013993	PSPC1	98	98.286	ENSPCOG00000014364	PSPC1	93	93.634	Propithecus_coquereli
ENSUMAG00000013993	PSPC1	98	97.714	ENSPVAG00000005036	PSPC1	93	95.072	Pteropus_vampyrus
ENSUMAG00000013993	PSPC1	91	71.692	ENSPNYG00000008893	pspc1	87	58.672	Pundamilia_nyererei
ENSUMAG00000013993	PSPC1	92	79.697	ENSPNAG00000016511	pspc1	94	69.880	Pygocentrus_nattereri
ENSUMAG00000013993	PSPC1	100	97.125	ENSRNOG00000020782	Pspc1	93	97.125	Rattus_norvegicus
ENSUMAG00000013993	PSPC1	100	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSUMAG00000013993	PSPC1	100	98.973	ENSRROG00000036334	PSPC1	93	98.973	Rhinopithecus_roxellana
ENSUMAG00000013993	PSPC1	85	88.378	ENSSBOG00000028172	PSPC1	90	94.928	Saimiri_boliviensis_boliviensis
ENSUMAG00000013993	PSPC1	98	91.458	ENSSHAG00000004696	PSPC1	93	91.411	Sarcophilus_harrisii
ENSUMAG00000013993	PSPC1	91	85.276	ENSSFOG00015001395	pspc1	90	78.009	Scleropages_formosus
ENSUMAG00000013993	PSPC1	96	74.785	ENSSMAG00000001761	pspc1	86	74.785	Scophthalmus_maximus
ENSUMAG00000013993	PSPC1	91	80.864	ENSSDUG00000010651	pspc1	76	73.953	Seriola_dumerili
ENSUMAG00000013993	PSPC1	91	73.765	ENSSLDG00000004284	pspc1	87	59.827	Seriola_lalandi_dorsalis
ENSUMAG00000013993	PSPC1	97	91.064	ENSSARG00000000888	PSPC1	93	90.144	Sorex_araneus
ENSUMAG00000013993	PSPC1	96	80.638	ENSSPUG00000008550	PSPC1	91	78.615	Sphenodon_punctatus
ENSUMAG00000013993	PSPC1	90	65.839	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSUMAG00000013993	PSPC1	91	80.556	ENSSPAG00000001921	pspc1	82	70.460	Stegastes_partitus
ENSUMAG00000013993	PSPC1	100	97.131	ENSSSCG00000009569	PSPC1	94	97.131	Sus_scrofa
ENSUMAG00000013993	PSPC1	96	94.433	ENSTGUG00000011295	PSPC1	100	94.433	Taeniopygia_guttata
ENSUMAG00000013993	PSPC1	91	70.769	ENSTRUG00000011335	pspc1	82	63.326	Takifugu_rubripes
ENSUMAG00000013993	PSPC1	93	72.205	ENSTNIG00000010358	pspc1	90	64.080	Tetraodon_nigroviridis
ENSUMAG00000013993	PSPC1	93	88.253	ENSTBEG00000002361	PSPC1	93	74.743	Tupaia_belangeri
ENSUMAG00000013993	PSPC1	100	97.536	ENSTTRG00000003343	PSPC1	94	97.536	Tursiops_truncatus
ENSUMAG00000013993	PSPC1	88	99.683	ENSUAMG00000012309	PSPC1	90	99.683	Ursus_americanus
ENSUMAG00000013993	PSPC1	82	98.747	ENSVPAG00000010029	PSPC1	100	98.747	Vicugna_pacos
ENSUMAG00000013993	PSPC1	100	99.384	ENSVVUG00000006414	PSPC1	93	99.384	Vulpes_vulpes
ENSUMAG00000013993	PSPC1	97	72.626	ENSXCOG00000017438	pspc1	85	72.626	Xiphophorus_couchianus
ENSUMAG00000013993	PSPC1	97	72.905	ENSXMAG00000007929	pspc1	85	72.905	Xiphophorus_maculatus