EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000014887 (Gene tree)
Gene ID: 103657944
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 1113 bases
Position: chrKK498540.1:338385-339497
Accession: 103657944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000020345	RRM_5	PF13893.6	2.5e-14	1	3
ENSUMAP00000020345	RRM_5	PF13893.6	2.5e-14	2	3
ENSUMAP00000020345	RRM_5	PF13893.6	2.5e-14	3	3
ENSUMAP00000020345	RRM_1	PF00076.22	2.8e-85	1	4
ENSUMAP00000020345	RRM_1	PF00076.22	2.8e-85	2	4
ENSUMAP00000020345	RRM_1	PF00076.22	2.8e-85	3	4
ENSUMAP00000020345	RRM_1	PF00076.22	2.8e-85	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000024098	PABPC4L-201	1113	-	ENSUMAP00000020345	370 (aa)	XP_008683621	UPI0004E00D25

Gene Model

Click here to download ENSUMAG00000014887's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03013	RNA transport	KEGG
umr03015	mRNA surveillance pathway	KEGG
umr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000014887's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000014887	PABPC4L	98	31.169	ENSUMAG00000023149	ELAVL4	80	31.169
ENSUMAG00000014887	PABPC4L	98	62.640	ENSUMAG00000023934	PABPC5	96	62.637
ENSUMAG00000014887	PABPC4L	99	74.054	ENSUMAG00000019585	PABPC4	74	74.054
ENSUMAG00000014887	PABPC4L	53	36.923	ENSUMAG00000019272	-	94	36.923
ENSUMAG00000014887	PABPC4L	96	61.538	ENSUMAG00000003364	-	98	61.538
ENSUMAG00000014887	PABPC4L	98	31.818	ENSUMAG00000005644	ELAVL2	99	31.818
ENSUMAG00000014887	PABPC4L	97	71.237	ENSUMAG00000017554	PABPC1	55	71.237
ENSUMAG00000014887	PABPC4L	63	37.500	ENSUMAG00000005794	CIRBP	59	41.333
ENSUMAG00000014887	PABPC4L	98	31.169	ENSUMAG00000019546	ELAVL3	56	31.169
ENSUMAG00000014887	PABPC4L	97	63.141	ENSUMAG00000025436	PABPC1L	83	63.141
ENSUMAG00000014887	PABPC4L	98	61.050	ENSUMAG00000023926	-	91	59.409
ENSUMAG00000014887	PABPC4L	61	42.105	ENSUMAG00000007785	RBM3	56	42.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000014887	PABPC4L	99	89.431	ENSG00000254535	PABPC4L	99	89.431	Homo_sapiens
ENSUMAG00000014887	PABPC4L	99	87.534	ENSANAG00000017199	PABPC4L	86	87.534	Aotus_nancymaae
ENSUMAG00000014887	PABPC4L	100	93.243	ENSBTAG00000046902	PABPC4L	100	93.243	Bos_taurus
ENSUMAG00000014887	PABPC4L	99	87.805	ENSCJAG00000045332	PABPC4L	86	87.805	Callithrix_jacchus
ENSUMAG00000014887	PABPC4L	99	75.815	ENSCAFG00020019182	-	55	75.815	Canis_lupus_dingo
ENSUMAG00000014887	PABPC4L	100	92.973	ENSCHIG00000007231	PABPC4L	100	92.973	Capra_hircus
ENSUMAG00000014887	PABPC4L	97	79.641	ENSCAPG00000000555	PABPC4L	100	79.641	Cavia_aperea
ENSUMAG00000014887	PABPC4L	99	76.152	ENSCPOG00000033167	PABPC4L	100	76.152	Cavia_porcellus
ENSUMAG00000014887	PABPC4L	99	87.805	ENSCCAG00000031681	PABPC4L	86	87.805	Cebus_capucinus
ENSUMAG00000014887	PABPC4L	99	82.385	ENSCLAG00000017628	PABPC4L	99	82.385	Chinchilla_lanigera
ENSUMAG00000014887	PABPC4L	99	86.721	ENSCANG00000037677	PABPC4L	99	86.721	Colobus_angolensis_palliatus
ENSUMAG00000014887	PABPC4L	99	79.946	ENSCGRG00001002070	Pabpc4l	99	79.946	Cricetulus_griseus_chok1gshd
ENSUMAG00000014887	PABPC4L	99	79.946	ENSCGRG00000020086	Pabpc4l	99	79.946	Cricetulus_griseus_crigri
ENSUMAG00000014887	PABPC4L	99	89.431	ENSDNOG00000031077	PABPC4L	95	89.431	Dasypus_novemcinctus
ENSUMAG00000014887	PABPC4L	100	92.162	ENSEASG00005007883	PABPC4L	100	92.162	Equus_asinus_asinus
ENSUMAG00000014887	PABPC4L	100	92.703	ENSECAG00000031416	PABPC4L	100	92.703	Equus_caballus
ENSUMAG00000014887	PABPC4L	100	96.757	ENSFCAG00000028270	PABPC4L	100	96.757	Felis_catus
ENSUMAG00000014887	PABPC4L	100	79.730	ENSFDAG00000019606	PABPC4L	100	79.730	Fukomys_damarensis
ENSUMAG00000014887	PABPC4L	99	88.889	ENSGGOG00000024991	PABPC4L	99	88.889	Gorilla_gorilla
ENSUMAG00000014887	PABPC4L	100	80.811	ENSHGLG00000020104	PABPC4L	100	80.811	Heterocephalus_glaber_female
ENSUMAG00000014887	PABPC4L	100	80.811	ENSHGLG00100020648	PABPC4L	100	80.811	Heterocephalus_glaber_male
ENSUMAG00000014887	PABPC4L	99	84.324	ENSSTOG00000019472	PABPC4L	99	84.324	Ictidomys_tridecemlineatus
ENSUMAG00000014887	PABPC4L	100	81.081	ENSJJAG00000004090	Pabpc4l	100	81.081	Jaculus_jaculus
ENSUMAG00000014887	PABPC4L	99	79.404	ENSMAUG00000016313	Pabpc4l	99	79.404	Mesocricetus_auratus
ENSUMAG00000014887	PABPC4L	99	89.973	ENSMICG00000029683	PABPC4L	99	89.973	Microcebus_murinus
ENSUMAG00000014887	PABPC4L	99	81.030	ENSMOCG00000007551	Pabpc4l	99	81.030	Microtus_ochrogaster
ENSUMAG00000014887	PABPC4L	99	78.591	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	78.488	Mus_caroli
ENSUMAG00000014887	PABPC4L	99	78.320	ENSMUSG00000090919	Pabpc4l	100	78.000	Mus_musculus
ENSUMAG00000014887	PABPC4L	99	78.591	MGP_PahariEiJ_G0026409	Pabpc4l	100	78.488	Mus_pahari
ENSUMAG00000014887	PABPC4L	99	77.778	MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	Mus_spretus
ENSUMAG00000014887	PABPC4L	99	81.572	ENSMLUG00000008254	PABPC4L	99	81.572	Myotis_lucifugus
ENSUMAG00000014887	PABPC4L	99	84.553	ENSNGAG00000001502	Pabpc4l	99	84.553	Nannospalax_galili
ENSUMAG00000014887	PABPC4L	99	89.431	ENSNLEG00000019300	PABPC4L	99	89.431	Nomascus_leucogenys
ENSUMAG00000014887	PABPC4L	99	82.385	ENSOGAG00000026166	PABPC4L	99	82.385	Otolemur_garnettii
ENSUMAG00000014887	PABPC4L	99	89.474	ENSPPAG00000043745	PABPC4L	93	89.474	Pan_paniscus
ENSUMAG00000014887	PABPC4L	100	96.216	ENSPPRG00000018628	PABPC4L	100	96.216	Panthera_pardus
ENSUMAG00000014887	PABPC4L	100	96.757	ENSPTIG00000010106	PABPC4L	100	96.757	Panthera_tigris_altaica
ENSUMAG00000014887	PABPC4L	99	89.474	ENSPTRG00000045513	-	78	89.474	Pan_troglodytes
ENSUMAG00000014887	PABPC4L	99	79.404	ENSPEMG00000012565	Pabpc4l	99	79.404	Peromyscus_maniculatus_bairdii
ENSUMAG00000014887	PABPC4L	99	89.431	ENSPCOG00000025578	PABPC4L	99	89.431	Propithecus_coquereli
ENSUMAG00000014887	PABPC4L	99	78.862	ENSRNOG00000029749	Pabpc4l	99	78.862	Rattus_norvegicus
ENSUMAG00000014887	PABPC4L	99	86.721	ENSRBIG00000030229	PABPC4L	99	86.721	Rhinopithecus_bieti
ENSUMAG00000014887	PABPC4L	99	86.450	ENSRROG00000020367	PABPC4L	99	86.450	Rhinopithecus_roxellana
ENSUMAG00000014887	PABPC4L	99	86.721	ENSSBOG00000016382	PABPC4L	99	86.721	Saimiri_boliviensis_boliviensis
ENSUMAG00000014887	PABPC4L	100	87.027	ENSSSCG00000009067	PABPC4L	100	87.027	Sus_scrofa
ENSUMAG00000014887	PABPC4L	100	100.000	ENSUAMG00000001289	PABPC4L	100	100.000	Ursus_americanus
ENSUMAG00000014887	PABPC4L	93	76.829	ENSVVUG00000011060	-	75	76.829	Vulpes_vulpes