EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000016118 (Gene tree)
Gene ID: 103669170
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 19979 bases
Position: chrKK498635.1:106473-126451
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000022027	CSD	PF00313.22	1.1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000026110	YBX3-201	1006	-	ENSUMAP00000022027	302 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000016118's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000016118's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000016118	YBX3	94	91.638	ENSG00000060138	YBX3	91	96.429	Homo_sapiens
ENSUMAG00000016118	YBX3	94	99.298	ENSAMEG00000009393	YBX3	81	99.298	Ailuropoda_melanoleuca
ENSUMAG00000016118	YBX3	94	70.175	ENSAPLG00000003147	YBX3	100	70.175	Anas_platyrhynchos
ENSUMAG00000016118	YBX3	94	91.638	ENSANAG00000024492	-	90	92.281	Aotus_nancymaae
ENSUMAG00000016118	YBX3	94	94.035	ENSBTAG00000009663	YBX3	75	91.166	Bos_taurus
ENSUMAG00000016118	YBX3	66	89.873	ENSCJAG00000033824	-	72	89.041	Callithrix_jacchus
ENSUMAG00000016118	YBX3	94	91.638	ENSCJAG00000021660	-	77	91.579	Callithrix_jacchus
ENSUMAG00000016118	YBX3	96	96.886	ENSCAFG00000013401	YBX3	90	98.227	Canis_familiaris
ENSUMAG00000016118	YBX3	94	94.737	ENSCAFG00020006412	YBX3	76	94.737	Canis_lupus_dingo
ENSUMAG00000016118	YBX3	94	94.386	ENSCHIG00000010863	YBX3	79	94.700	Capra_hircus
ENSUMAG00000016118	YBX3	94	58.947	ENSTSYG00000035821	-	72	53.061	Carlito_syrichta
ENSUMAG00000016118	YBX3	97	93.919	ENSTSYG00000004204	-	87	93.684	Carlito_syrichta
ENSUMAG00000016118	YBX3	98	88.926	ENSCAPG00000015039	YBX3	93	90.845	Cavia_aperea
ENSUMAG00000016118	YBX3	94	90.559	ENSCPOG00000011329	YBX3	84	90.845	Cavia_porcellus
ENSUMAG00000016118	YBX3	94	91.289	ENSCCAG00000016469	YBX3	77	91.228	Cebus_capucinus
ENSUMAG00000016118	YBX3	94	90.941	ENSCATG00000034411	YBX3	76	90.877	Cercocebus_atys
ENSUMAG00000016118	YBX3	97	90.816	ENSCLAG00000016030	YBX3	93	91.549	Chinchilla_lanigera
ENSUMAG00000016118	YBX3	94	91.289	ENSCSAG00000008744	YBX3	76	91.228	Chlorocebus_sabaeus
ENSUMAG00000016118	YBX3	94	80.769	ENSCPBG00000014147	YBX3	79	80.986	Chrysemys_picta_bellii
ENSUMAG00000016118	YBX3	94	91.986	ENSCANG00000036801	YBX3	90	92.632	Colobus_angolensis_palliatus
ENSUMAG00000016118	YBX3	94	93.357	ENSCGRG00001016148	Ybx3	78	93.662	Cricetulus_griseus_chok1gshd
ENSUMAG00000016118	YBX3	96	91.246	ENSCGRG00000004563	Ybx3	97	92.042	Cricetulus_griseus_crigri
ENSUMAG00000016118	YBX3	94	94.366	ENSDORG00000009103	Ybx3	80	94.366	Dipodomys_ordii
ENSUMAG00000016118	YBX3	93	84.965	ENSETEG00000002557	YBX3	99	83.099	Echinops_telfairi
ENSUMAG00000016118	YBX3	94	90.526	ENSEASG00005014726	YBX3	76	90.813	Equus_asinus_asinus
ENSUMAG00000016118	YBX3	94	94.386	ENSECAG00000013777	YBX3	77	94.386	Equus_caballus
ENSUMAG00000016118	YBX3	93	91.901	ENSEEUG00000010415	YBX3	100	92.254	Erinaceus_europaeus
ENSUMAG00000016118	YBX3	94	96.853	ENSFCAG00000027748	YBX3	77	96.853	Felis_catus
ENSUMAG00000016118	YBX3	94	65.854	ENSFALG00000003661	YBX3	100	63.194	Ficedula_albicollis
ENSUMAG00000016118	YBX3	97	86.780	ENSFDAG00000021192	YBX3	91	87.676	Fukomys_damarensis
ENSUMAG00000016118	YBX3	94	61.404	ENSGALG00000031890	YBX3	74	59.298	Gallus_gallus
ENSUMAG00000016118	YBX3	94	79.720	ENSGAGG00000017780	YBX3	79	79.930	Gopherus_agassizii
ENSUMAG00000016118	YBX3	94	91.638	ENSGGOG00000001352	YBX3	76	91.579	Gorilla_gorilla
ENSUMAG00000016118	YBX3	94	77.586	ENSHGLG00000014798	-	84	78.819	Heterocephalus_glaber_female
ENSUMAG00000016118	YBX3	87	80.451	ENSHGLG00000015495	-	77	78.327	Heterocephalus_glaber_female
ENSUMAG00000016118	YBX3	69	96.875	ENSHGLG00100003589	YBX3	86	65.141	Heterocephalus_glaber_male
ENSUMAG00000016118	YBX3	94	89.161	ENSSTOG00000032577	-	80	89.437	Ictidomys_tridecemlineatus
ENSUMAG00000016118	YBX3	97	88.475	ENSSTOG00000002108	-	88	88.732	Ictidomys_tridecemlineatus
ENSUMAG00000016118	YBX3	94	69.444	ENSJJAG00000014239	Ybx3	90	84.615	Jaculus_jaculus
ENSUMAG00000016118	YBX3	94	95.105	ENSLAFG00000017247	YBX3	83	91.103	Loxodonta_africana
ENSUMAG00000016118	YBX3	94	91.289	ENSMFAG00000039369	YBX3	77	91.228	Macaca_fascicularis
ENSUMAG00000016118	YBX3	94	91.289	ENSMMUG00000022469	YBX3	88	91.228	Macaca_mulatta
ENSUMAG00000016118	YBX3	94	91.289	ENSMNEG00000045109	YBX3	77	91.228	Macaca_nemestrina
ENSUMAG00000016118	YBX3	99	93.355	ENSMLEG00000033618	YBX3	84	93.355	Mandrillus_leucophaeus
ENSUMAG00000016118	YBX3	94	67.832	ENSMGAG00000014224	YBX3	99	66.667	Meleagris_gallopavo
ENSUMAG00000016118	YBX3	94	93.007	ENSMAUG00000012185	Ybx3	88	93.310	Mesocricetus_auratus
ENSUMAG00000016118	YBX3	84	82.022	ENSMICG00000031459	-	74	81.429	Microcebus_murinus
ENSUMAG00000016118	YBX3	94	96.503	ENSMICG00000038002	-	77	96.503	Microcebus_murinus
ENSUMAG00000016118	YBX3	94	93.357	ENSMOCG00000016291	Ybx3	93	93.662	Microtus_ochrogaster
ENSUMAG00000016118	YBX3	97	84.354	ENSMODG00000018248	YBX3	91	85.263	Monodelphis_domestica
ENSUMAG00000016118	YBX3	94	92.657	MGP_CAROLIEiJ_G0028947	Ybx3	78	92.958	Mus_caroli
ENSUMAG00000016118	YBX3	94	92.657	ENSMUSG00000030189	Ybx3	78	92.958	Mus_musculus
ENSUMAG00000016118	YBX3	94	93.357	MGP_PahariEiJ_G0022709	Ybx3	78	93.662	Mus_pahari
ENSUMAG00000016118	YBX3	94	93.007	MGP_SPRETEiJ_G0029994	Ybx3	78	93.310	Mus_spretus
ENSUMAG00000016118	YBX3	94	78.571	ENSMPUG00000011810	YBX3	77	78.276	Mustela_putorius_furo
ENSUMAG00000016118	YBX3	87	95.896	ENSMLUG00000007476	YBX3	100	95.896	Myotis_lucifugus
ENSUMAG00000016118	YBX3	93	87.676	ENSNGAG00000000710	Ybx3	62	87.676	Nannospalax_galili
ENSUMAG00000016118	YBX3	94	89.199	ENSNLEG00000034844	YBX3	81	87.368	Nomascus_leucogenys
ENSUMAG00000016118	YBX3	57	77.907	ENSMEUG00000002507	-	81	77.907	Notamacropus_eugenii
ENSUMAG00000016118	YBX3	89	86.989	ENSODEG00000017957	YBX3	84	85.915	Octodon_degus
ENSUMAG00000016118	YBX3	94	89.510	ENSOCUG00000001889	YBX3	81	90.747	Oryctolagus_cuniculus
ENSUMAG00000016118	YBX3	94	92.833	ENSOGAG00000013245	YBX3	77	93.127	Otolemur_garnettii
ENSUMAG00000016118	YBX3	94	84.669	ENSOARG00000020919	YBX3	96	84.912	Ovis_aries
ENSUMAG00000016118	YBX3	94	91.638	ENSPPAG00000039068	YBX3	79	91.579	Pan_paniscus
ENSUMAG00000016118	YBX3	94	97.203	ENSPPRG00000005859	YBX3	77	97.203	Panthera_pardus
ENSUMAG00000016118	YBX3	97	97.952	ENSPTIG00000005322	YBX3	83	97.952	Panthera_tigris_altaica
ENSUMAG00000016118	YBX3	94	91.638	ENSPTRG00000004681	YBX3	76	91.579	Pan_troglodytes
ENSUMAG00000016118	YBX3	94	90.941	ENSPANG00000010280	YBX3	77	90.877	Papio_anubis
ENSUMAG00000016118	YBX3	70	98.077	ENSPSIG00000009247	YBX3	92	100.000	Pelodiscus_sinensis
ENSUMAG00000016118	YBX3	94	93.706	ENSPEMG00000012132	-	89	94.014	Peromyscus_maniculatus_bairdii
ENSUMAG00000016118	YBX3	66	98.864	ENSPEMG00000010391	-	81	67.845	Peromyscus_maniculatus_bairdii
ENSUMAG00000016118	YBX3	85	82.558	ENSPCIG00000029949	YBX3	100	82.558	Phascolarctos_cinereus
ENSUMAG00000016118	YBX3	94	91.289	ENSPPYG00000004279	YBX3	77	91.228	Pongo_abelii
ENSUMAG00000016118	YBX3	68	93.720	ENSPCAG00000001397	YBX3	69	93.970	Procavia_capensis
ENSUMAG00000016118	YBX3	58	90.286	ENSPCOG00000011663	YBX3	67	90.286	Propithecus_coquereli
ENSUMAG00000016118	YBX3	94	79.371	ENSPVAG00000006740	YBX3	77	79.371	Pteropus_vampyrus
ENSUMAG00000016118	YBX3	94	93.706	ENSRNOG00000005480	Ybx3	78	94.014	Rattus_norvegicus
ENSUMAG00000016118	YBX3	94	91.289	ENSRBIG00000039208	YBX3	77	91.228	Rhinopithecus_bieti
ENSUMAG00000016118	YBX3	94	91.289	ENSRROG00000029638	YBX3	77	91.228	Rhinopithecus_roxellana
ENSUMAG00000016118	YBX3	98	93.919	ENSSBOG00000030573	YBX3	82	94.014	Saimiri_boliviensis_boliviensis
ENSUMAG00000016118	YBX3	94	80.756	ENSSHAG00000003262	YBX3	98	81.787	Sarcophilus_harrisii
ENSUMAG00000016118	YBX3	94	96.853	ENSSSCG00000000633	YBX3	75	96.853	Sus_scrofa
ENSUMAG00000016118	YBX3	94	68.421	ENSTGUG00000012047	YBX3	100	67.719	Taeniopygia_guttata
ENSUMAG00000016118	YBX3	94	93.380	ENSTBEG00000012570	YBX3	78	93.662	Tupaia_belangeri
ENSUMAG00000016118	YBX3	86	85.338	ENSTTRG00000008045	YBX3	100	84.962	Tursiops_truncatus
ENSUMAG00000016118	YBX3	91	96.739	ENSUAMG00000016662	YBX3	100	96.739	Ursus_americanus
ENSUMAG00000016118	YBX3	93	69.965	ENSVPAG00000000876	YBX3	100	73.145	Vicugna_pacos
ENSUMAG00000016118	YBX3	91	94.565	ENSVVUG00000004956	YBX3	100	94.565	Vulpes_vulpes
ENSUMAG00000016118	YBX3	64	92.045	ENSXETG00000016239	ybx3	89	53.846	Xenopus_tropicalis