EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000016665 (Gene tree)
Gene ID: 103681123
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 21125 bases
Position: chrKK499304.1:1540590-1561714
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000023287	PRP21_like_P	PF12230.8	7.5e-52	1	1
ENSUMAP00000023218	PRP21_like_P	PF12230.8	9.7e-52	1	1
ENSUMAP00000023265	PRP21_like_P	PF12230.8	1e-51	1	1
ENSUMAP00000023288	PRP21_like_P	PF12230.8	1e-51	1	1
ENSUMAP00000023293	PRP21_like_P	PF12230.8	1e-51	1	1
ENSUMAP00000023316	PRP21_like_P	PF12230.8	4.1e-50	1	1
ENSUMAP00000023287	Surp	PF01805.20	5.4e-46	1	2
ENSUMAP00000023287	Surp	PF01805.20	5.4e-46	2	2
ENSUMAP00000023218	Surp	PF01805.20	6.9e-46	1	2
ENSUMAP00000023218	Surp	PF01805.20	6.9e-46	2	2
ENSUMAP00000023265	Surp	PF01805.20	7.7e-46	1	2
ENSUMAP00000023265	Surp	PF01805.20	7.7e-46	2	2
ENSUMAP00000023288	Surp	PF01805.20	7.8e-46	1	2
ENSUMAP00000023288	Surp	PF01805.20	7.8e-46	2	2
ENSUMAP00000023293	Surp	PF01805.20	7.8e-46	1	2
ENSUMAP00000023293	Surp	PF01805.20	7.8e-46	2	2
ENSUMAP00000023316	Surp	PF01805.20	2.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000027616	SF3A1-206	2216	-	ENSUMAP00000023316	652 (aa)	-	-
ENSUMAT00000027559	SF3A1-202	2361	-	ENSUMAP00000023265	786 (aa)	-	-
ENSUMAT00000027591	SF3A1-205	2376	-	ENSUMAP00000023293	791 (aa)	-	-
ENSUMAT00000027510	SF3A1-201	2301	-	ENSUMAP00000023218	766 (aa)	-	-
ENSUMAT00000027586	SF3A1-204	2376	-	ENSUMAP00000023288	791 (aa)	-	-
ENSUMAT00000027585	SF3A1-203	2031	-	ENSUMAP00000023287	676 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000016665's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000016665's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000016665	SF3A1	99	98.087	ENSG00000099995	SF3A1	99	98.087	Homo_sapiens
ENSUMAG00000016665	SF3A1	100	83.461	ENSAPOG00000020465	sf3a1	99	85.419	Acanthochromis_polyacanthus
ENSUMAG00000016665	SF3A1	99	98.980	ENSAMEG00000007737	SF3A1	99	98.980	Ailuropoda_melanoleuca
ENSUMAG00000016665	SF3A1	99	85.077	ENSACIG00000020672	sf3a1	99	84.981	Amphilophus_citrinellus
ENSUMAG00000016665	SF3A1	100	83.629	ENSAOCG00000003060	sf3a1	99	85.419	Amphiprion_ocellaris
ENSUMAG00000016665	SF3A1	100	83.756	ENSAPEG00000010735	sf3a1	99	85.548	Amphiprion_percula
ENSUMAG00000016665	SF3A1	98	85.156	ENSATEG00000021201	sf3a1	98	85.419	Anabas_testudineus
ENSUMAG00000016665	SF3A1	96	94.055	ENSAPLG00000009057	SF3A1	99	93.506	Anas_platyrhynchos
ENSUMAG00000016665	SF3A1	99	86.272	ENSACAG00000009415	SF3A1	98	87.657	Anolis_carolinensis
ENSUMAG00000016665	SF3A1	99	98.214	ENSANAG00000032045	SF3A1	99	98.214	Aotus_nancymaae
ENSUMAG00000016665	SF3A1	99	85.313	ENSACLG00000012622	sf3a1	99	85.917	Astatotilapia_calliptera
ENSUMAG00000016665	SF3A1	99	83.825	ENSAMXG00000005382	sf3a1	99	84.596	Astyanax_mexicanus
ENSUMAG00000016665	SF3A1	98	99.351	ENSBTAG00000003390	SF3A1	99	98.342	Bos_taurus
ENSUMAG00000016665	SF3A1	86	44.161	WBGene00004188	prp-21	98	43.158	Caenorhabditis_elegans
ENSUMAG00000016665	SF3A1	99	98.087	ENSCJAG00000010370	SF3A1	99	98.087	Callithrix_jacchus
ENSUMAG00000016665	SF3A1	98	99.870	ENSCAFG00000012559	SF3A1	99	98.852	Canis_familiaris
ENSUMAG00000016665	SF3A1	98	99.870	ENSCAFG00020000838	SF3A1	99	98.852	Canis_lupus_dingo
ENSUMAG00000016665	SF3A1	98	99.222	ENSCHIG00000018642	SF3A1	99	98.214	Capra_hircus
ENSUMAG00000016665	SF3A1	99	98.469	ENSTSYG00000004739	SF3A1	99	98.469	Carlito_syrichta
ENSUMAG00000016665	SF3A1	96	80.560	ENSCAPG00000015414	SF3A1	99	80.481	Cavia_aperea
ENSUMAG00000016665	SF3A1	99	97.959	ENSCPOG00000014589	SF3A1	99	97.959	Cavia_porcellus
ENSUMAG00000016665	SF3A1	99	98.214	ENSCCAG00000032006	SF3A1	99	98.214	Cebus_capucinus
ENSUMAG00000016665	SF3A1	99	98.214	ENSCATG00000029241	SF3A1	99	98.214	Cercocebus_atys
ENSUMAG00000016665	SF3A1	99	97.321	ENSCLAG00000006508	SF3A1	99	97.321	Chinchilla_lanigera
ENSUMAG00000016665	SF3A1	99	98.087	ENSCSAG00000009470	SF3A1	99	98.087	Chlorocebus_sabaeus
ENSUMAG00000016665	SF3A1	62	99.259	ENSCHOG00000005201	SF3A1	69	99.262	Choloepus_hoffmanni
ENSUMAG00000016665	SF3A1	97	92.288	ENSCPBG00000007595	SF3A1	97	92.068	Chrysemys_picta_bellii
ENSUMAG00000016665	SF3A1	96	51.760	ENSCING00000008526	-	97	51.465	Ciona_intestinalis
ENSUMAG00000016665	SF3A1	98	51.488	ENSCSAVG00000005608	-	99	61.864	Ciona_savignyi
ENSUMAG00000016665	SF3A1	99	98.087	ENSCANG00000033564	SF3A1	99	98.087	Colobus_angolensis_palliatus
ENSUMAG00000016665	SF3A1	99	97.449	ENSCGRG00001008933	Sf3a1	99	97.449	Cricetulus_griseus_chok1gshd
ENSUMAG00000016665	SF3A1	99	97.449	ENSCGRG00000006127	Sf3a1	99	97.449	Cricetulus_griseus_crigri
ENSUMAG00000016665	SF3A1	99	82.519	ENSCSEG00000010792	sf3a1	99	82.134	Cynoglossus_semilaevis
ENSUMAG00000016665	SF3A1	99	83.784	ENSCVAG00000004560	sf3a1	99	83.526	Cyprinodon_variegatus
ENSUMAG00000016665	SF3A1	98	84.031	ENSDARG00000041887	sf3a1	100	83.355	Danio_rerio
ENSUMAG00000016665	SF3A1	99	98.473	ENSDNOG00000010629	SF3A1	99	98.473	Dasypus_novemcinctus
ENSUMAG00000016665	SF3A1	99	98.214	ENSDORG00000005613	Sf3a1	99	98.214	Dipodomys_ordii
ENSUMAG00000016665	SF3A1	81	61.394	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSUMAG00000016665	SF3A1	91	96.921	ENSETEG00000017194	SF3A1	99	93.957	Echinops_telfairi
ENSUMAG00000016665	SF3A1	99	67.625	ENSEBUG00000001285	sf3a1	97	66.871	Eptatretus_burgeri
ENSUMAG00000016665	SF3A1	99	98.342	ENSEASG00005010254	SF3A1	99	98.342	Equus_asinus_asinus
ENSUMAG00000016665	SF3A1	99	98.342	ENSECAG00000023962	SF3A1	99	98.342	Equus_caballus
ENSUMAG00000016665	SF3A1	77	95.082	ENSEEUG00000003159	SF3A1	83	95.082	Erinaceus_europaeus
ENSUMAG00000016665	SF3A1	100	81.242	ENSELUG00000022578	sf3a1	100	80.726	Esox_lucius
ENSUMAG00000016665	SF3A1	98	99.611	ENSFCAG00000011932	SF3A1	99	98.597	Felis_catus
ENSUMAG00000016665	SF3A1	96	92.989	ENSFALG00000006944	SF3A1	98	92.387	Ficedula_albicollis
ENSUMAG00000016665	SF3A1	99	97.832	ENSFDAG00000009560	SF3A1	99	97.832	Fukomys_damarensis
ENSUMAG00000016665	SF3A1	99	84.813	ENSFHEG00000010866	sf3a1	99	84.299	Fundulus_heteroclitus
ENSUMAG00000016665	SF3A1	98	82.895	ENSGMOG00000016024	sf3a1	100	80.427	Gadus_morhua
ENSUMAG00000016665	SF3A1	96	94.048	ENSGALG00000007937	SF3A1	98	93.161	Gallus_gallus
ENSUMAG00000016665	SF3A1	99	83.694	ENSGAFG00000009111	sf3a1	100	82.456	Gambusia_affinis
ENSUMAG00000016665	SF3A1	98	83.684	ENSGACG00000011893	sf3a1	97	83.246	Gasterosteus_aculeatus
ENSUMAG00000016665	SF3A1	93	92.896	ENSGAGG00000000762	SF3A1	97	92.255	Gopherus_agassizii
ENSUMAG00000016665	SF3A1	99	98.087	ENSGGOG00000012631	SF3A1	99	98.087	Gorilla_gorilla
ENSUMAG00000016665	SF3A1	99	85.313	ENSHBUG00000015795	sf3a1	99	85.917	Haplochromis_burtoni
ENSUMAG00000016665	SF3A1	99	98.087	ENSHGLG00000007907	SF3A1	99	98.087	Heterocephalus_glaber_female
ENSUMAG00000016665	SF3A1	99	98.087	ENSHGLG00100013799	SF3A1	99	98.087	Heterocephalus_glaber_male
ENSUMAG00000016665	SF3A1	100	80.410	ENSHCOG00000015423	sf3a1	100	80.282	Hippocampus_comes
ENSUMAG00000016665	SF3A1	98	82.546	ENSIPUG00000002470	sf3a1	98	82.682	Ictalurus_punctatus
ENSUMAG00000016665	SF3A1	99	98.087	ENSSTOG00000013892	SF3A1	99	98.087	Ictidomys_tridecemlineatus
ENSUMAG00000016665	SF3A1	98	99.093	ENSJJAG00000022566	Sf3a1	99	97.586	Jaculus_jaculus
ENSUMAG00000016665	SF3A1	99	83.419	ENSKMAG00000002400	sf3a1	100	82.642	Kryptolebias_marmoratus
ENSUMAG00000016665	SF3A1	100	82.120	ENSLBEG00000022974	sf3a1	100	82.120	Labrus_bergylta
ENSUMAG00000016665	SF3A1	98	88.120	ENSLACG00000003565	SF3A1	100	86.233	Latimeria_chalumnae
ENSUMAG00000016665	SF3A1	97	86.623	ENSLOCG00000008251	sf3a1	97	86.753	Lepisosteus_oculatus
ENSUMAG00000016665	SF3A1	98	62.679	ENSLAFG00000026032	-	97	62.939	Loxodonta_africana
ENSUMAG00000016665	SF3A1	99	98.087	ENSLAFG00000000448	SF3A1	99	98.087	Loxodonta_africana
ENSUMAG00000016665	SF3A1	99	97.959	ENSMFAG00000031979	SF3A1	99	97.959	Macaca_fascicularis
ENSUMAG00000016665	SF3A1	99	97.959	ENSMMUG00000005547	SF3A1	99	97.959	Macaca_mulatta
ENSUMAG00000016665	SF3A1	99	97.832	ENSMNEG00000037229	SF3A1	99	97.832	Macaca_nemestrina
ENSUMAG00000016665	SF3A1	99	98.087	ENSMLEG00000041908	SF3A1	99	98.087	Mandrillus_leucophaeus
ENSUMAG00000016665	SF3A1	98	85.788	ENSMAMG00000006460	sf3a1	97	85.917	Mastacembelus_armatus
ENSUMAG00000016665	SF3A1	99	85.313	ENSMZEG00005009633	sf3a1	99	85.917	Maylandia_zebra
ENSUMAG00000016665	SF3A1	96	94.048	ENSMGAG00000001330	SF3A1	99	93.498	Meleagris_gallopavo
ENSUMAG00000016665	SF3A1	98	94.255	ENSMAUG00000020317	Sf3a1	94	94.945	Mesocricetus_auratus
ENSUMAG00000016665	SF3A1	99	98.214	ENSMICG00000010038	SF3A1	99	98.214	Microcebus_murinus
ENSUMAG00000016665	SF3A1	99	97.577	ENSMOCG00000008438	Sf3a1	99	97.577	Microtus_ochrogaster
ENSUMAG00000016665	SF3A1	100	82.429	ENSMMOG00000015588	sf3a1	99	82.429	Mola_mola
ENSUMAG00000016665	SF3A1	99	96.684	ENSMODG00000009270	SF3A1	99	96.684	Monodelphis_domestica
ENSUMAG00000016665	SF3A1	97	86.126	ENSMALG00000000148	sf3a1	99	85.831	Monopterus_albus
ENSUMAG00000016665	SF3A1	98	98.189	MGP_CAROLIEiJ_G0016029	Sf3a1	99	96.947	Mus_caroli
ENSUMAG00000016665	SF3A1	98	98.189	ENSMUSG00000002129	Sf3a1	99	96.947	Mus_musculus
ENSUMAG00000016665	SF3A1	98	98.060	MGP_PahariEiJ_G0016862	Sf3a1	99	96.819	Mus_pahari
ENSUMAG00000016665	SF3A1	98	98.189	MGP_SPRETEiJ_G0016870	Sf3a1	99	96.947	Mus_spretus
ENSUMAG00000016665	SF3A1	99	98.724	ENSMPUG00000013144	SF3A1	99	98.724	Mustela_putorius_furo
ENSUMAG00000016665	SF3A1	99	98.087	ENSMLUG00000002139	SF3A1	99	98.087	Myotis_lucifugus
ENSUMAG00000016665	SF3A1	99	97.832	ENSNGAG00000016977	Sf3a1	99	97.832	Nannospalax_galili
ENSUMAG00000016665	SF3A1	100	83.629	ENSNBRG00000016642	sf3a1	100	83.479	Neolamprologus_brichardi
ENSUMAG00000016665	SF3A1	99	98.087	ENSNLEG00000003686	SF3A1	99	98.087	Nomascus_leucogenys
ENSUMAG00000016665	SF3A1	94	87.500	ENSMEUG00000008741	SF3A1	99	86.170	Notamacropus_eugenii
ENSUMAG00000016665	SF3A1	98	98.581	ENSOPRG00000016636	SF3A1	98	98.581	Ochotona_princeps
ENSUMAG00000016665	SF3A1	99	97.959	ENSODEG00000002571	SF3A1	99	97.959	Octodon_degus
ENSUMAG00000016665	SF3A1	99	84.949	ENSONIG00000010848	sf3a1	99	85.290	Oreochromis_niloticus
ENSUMAG00000016665	SF3A1	99	98.214	ENSOCUG00000007633	SF3A1	99	98.214	Oryctolagus_cuniculus
ENSUMAG00000016665	SF3A1	96	81.782	ENSORLG00000013050	sf3a1	98	83.827	Oryzias_latipes
ENSUMAG00000016665	SF3A1	98	80.873	ENSORLG00020003236	sf3a1	94	83.962	Oryzias_latipes_hni
ENSUMAG00000016665	SF3A1	100	82.166	ENSORLG00015017411	sf3a1	100	82.516	Oryzias_latipes_hsok
ENSUMAG00000016665	SF3A1	99	83.546	ENSOMEG00000013362	sf3a1	98	84.245	Oryzias_melastigma
ENSUMAG00000016665	SF3A1	99	98.087	ENSOGAG00000012931	SF3A1	99	98.087	Otolemur_garnettii
ENSUMAG00000016665	SF3A1	99	96.429	ENSOARG00000006849	SF3A1	99	96.429	Ovis_aries
ENSUMAG00000016665	SF3A1	99	97.066	ENSPPAG00000041790	SF3A1	99	97.066	Pan_paniscus
ENSUMAG00000016665	SF3A1	98	99.611	ENSPPRG00000004391	SF3A1	99	98.597	Panthera_pardus
ENSUMAG00000016665	SF3A1	98	99.482	ENSPTIG00000000844	SF3A1	100	99.482	Panthera_tigris_altaica
ENSUMAG00000016665	SF3A1	99	98.087	ENSPTRG00000014240	SF3A1	99	98.087	Pan_troglodytes
ENSUMAG00000016665	SF3A1	99	98.087	ENSPANG00000020772	SF3A1	99	98.087	Papio_anubis
ENSUMAG00000016665	SF3A1	84	93.407	ENSPSIG00000012803	SF3A1	99	93.407	Pelodiscus_sinensis
ENSUMAG00000016665	SF3A1	98	83.752	ENSPMGG00000023096	sf3a1	100	84.280	Periophthalmus_magnuspinnatus
ENSUMAG00000016665	SF3A1	99	97.704	ENSPEMG00000009494	Sf3a1	99	97.704	Peromyscus_maniculatus_bairdii
ENSUMAG00000016665	SF3A1	75	81.128	ENSPMAG00000007139	-	99	72.591	Petromyzon_marinus
ENSUMAG00000016665	SF3A1	99	96.556	ENSPCIG00000022692	SF3A1	99	96.556	Phascolarctos_cinereus
ENSUMAG00000016665	SF3A1	98	81.764	ENSPFOG00000016768	sf3a1	93	79.070	Poecilia_formosa
ENSUMAG00000016665	SF3A1	99	84.556	ENSPLAG00000017268	sf3a1	99	84.041	Poecilia_latipinna
ENSUMAG00000016665	SF3A1	98	82.681	ENSPMEG00000019811	sf3a1	98	85.241	Poecilia_mexicana
ENSUMAG00000016665	SF3A1	99	84.685	ENSPREG00000010347	sf3a1	99	84.427	Poecilia_reticulata
ENSUMAG00000016665	SF3A1	99	98.087	ENSPPYG00000011707	SF3A1	99	98.087	Pongo_abelii
ENSUMAG00000016665	SF3A1	69	99.528	ENSPCAG00000003266	SF3A1	57	99.528	Procavia_capensis
ENSUMAG00000016665	SF3A1	99	98.214	ENSPCOG00000026630	SF3A1	99	98.214	Propithecus_coquereli
ENSUMAG00000016665	SF3A1	100	95.126	ENSPVAG00000017719	SF3A1	94	98.926	Pteropus_vampyrus
ENSUMAG00000016665	SF3A1	99	85.313	ENSPNYG00000018706	sf3a1	99	85.917	Pundamilia_nyererei
ENSUMAG00000016665	SF3A1	99	83.825	ENSPNAG00000003721	sf3a1	98	85.306	Pygocentrus_nattereri
ENSUMAG00000016665	SF3A1	99	97.321	ENSRNOG00000005218	Sf3a1	99	97.321	Rattus_norvegicus
ENSUMAG00000016665	SF3A1	99	97.959	ENSRBIG00000032167	SF3A1	99	97.959	Rhinopithecus_bieti
ENSUMAG00000016665	SF3A1	99	97.959	ENSRROG00000044908	SF3A1	99	97.959	Rhinopithecus_roxellana
ENSUMAG00000016665	SF3A1	100	95.716	ENSSBOG00000021960	SF3A1	100	99.409	Saimiri_boliviensis_boliviensis
ENSUMAG00000016665	SF3A1	100	93.182	ENSSHAG00000003666	SF3A1	99	93.878	Sarcophilus_harrisii
ENSUMAG00000016665	SF3A1	100	83.186	ENSSFOG00015004579	sf3a1	98	85.788	Scleropages_formosus
ENSUMAG00000016665	SF3A1	100	81.281	ENSSMAG00000004275	sf3a1	100	80.779	Scophthalmus_maximus
ENSUMAG00000016665	SF3A1	99	84.949	ENSSDUG00000022219	sf3a1	99	85.161	Seriola_dumerili
ENSUMAG00000016665	SF3A1	99	84.949	ENSSLDG00000012642	sf3a1	99	85.161	Seriola_lalandi_dorsalis
ENSUMAG00000016665	SF3A1	98	95.725	ENSSARG00000005960	SF3A1	100	95.725	Sorex_araneus
ENSUMAG00000016665	SF3A1	97	91.710	ENSSPUG00000018863	SF3A1	98	91.975	Sphenodon_punctatus
ENSUMAG00000016665	SF3A1	99	85.204	ENSSPAG00000011856	sf3a1	99	84.981	Stegastes_partitus
ENSUMAG00000016665	SF3A1	98	99.222	ENSSSCG00000010002	SF3A1	99	98.214	Sus_scrofa
ENSUMAG00000016665	SF3A1	96	93.931	ENSTGUG00000010547	SF3A1	99	93.385	Taeniopygia_guttata
ENSUMAG00000016665	SF3A1	99	81.865	ENSTRUG00000006118	sf3a1	100	80.563	Takifugu_rubripes
ENSUMAG00000016665	SF3A1	65	81.413	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSUMAG00000016665	SF3A1	98	91.569	ENSTBEG00000012771	SF3A1	99	90.331	Tupaia_belangeri
ENSUMAG00000016665	SF3A1	98	99.223	ENSTTRG00000001535	SF3A1	99	98.217	Tursiops_truncatus
ENSUMAG00000016665	SF3A1	98	97.941	ENSUAMG00000006750	SF3A1	98	97.941	Ursus_americanus
ENSUMAG00000016665	SF3A1	98	99.870	ENSVVUG00000003075	SF3A1	99	98.852	Vulpes_vulpes
ENSUMAG00000016665	SF3A1	97	88.305	ENSXETG00000016144	sf3a1	97	87.013	Xenopus_tropicalis
ENSUMAG00000016665	SF3A1	100	82.456	ENSXCOG00000015653	sf3a1	100	82.331	Xiphophorus_couchianus
ENSUMAG00000016665	SF3A1	100	82.581	ENSXMAG00000002753	sf3a1	100	82.456	Xiphophorus_maculatus