EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000016952 (Gene tree)
Gene ID: 103661495
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 30866 bases
Position: chrKK498579.1:1928828-1959693
Accession: 103661495
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000023234	POP1	PF06978.11	1.3e-36	1	2
ENSUMAP00000023234	POP1	PF06978.11	1.3e-36	2	2
ENSUMAP00000023241	POP1	PF06978.11	4.7e-32	1	2
ENSUMAP00000023241	POP1	PF06978.11	4.7e-32	2	2
ENSUMAP00000023241	POPLD	PF08170.12	2e-25	1	1
ENSUMAP00000023234	POPLD	PF08170.12	2.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000027528	POP1-201	3942	-	ENSUMAP00000023234	1025 (aa)	XP_008687420	UPI0004E012F5
ENSUMAT00000027535	POP1-202	3666	-	ENSUMAP00000023241	933 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000016952's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03008	Ribosome biogenesis in eukaryotes	KEGG
umr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000016952's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000016952	POP1	100	90.283	ENSG00000104356	POP1	100	89.071	Homo_sapiens
ENSUMAG00000016952	POP1	100	52.239	ENSAPOG00000008198	pop1	100	47.220	Acanthochromis_polyacanthus
ENSUMAG00000016952	POP1	100	96.047	ENSAMEG00000000556	POP1	100	94.380	Ailuropoda_melanoleuca
ENSUMAG00000016952	POP1	89	70.833	ENSACIG00000004169	POP1	100	46.381	Amphilophus_citrinellus
ENSUMAG00000016952	POP1	100	51.685	ENSAOCG00000010991	pop1	100	47.081	Amphiprion_ocellaris
ENSUMAG00000016952	POP1	90	58.333	ENSAPEG00000007607	pop1	88	61.310	Amphiprion_percula
ENSUMAG00000016952	POP1	100	49.624	ENSATEG00000024814	POP1	100	45.070	Anabas_testudineus
ENSUMAG00000016952	POP1	91	79.518	ENSAPLG00000014418	POP1	91	79.518	Anas_platyrhynchos
ENSUMAG00000016952	POP1	100	59.684	ENSACAG00000016083	POP1	100	55.460	Anolis_carolinensis
ENSUMAG00000016952	POP1	88	87.537	ENSANAG00000026360	POP1	99	87.537	Aotus_nancymaae
ENSUMAG00000016952	POP1	100	51.866	ENSACLG00000010951	pop1	100	46.931	Astatotilapia_calliptera
ENSUMAG00000016952	POP1	100	53.150	ENSAMXG00000014483	POP1	100	45.722	Astyanax_mexicanus
ENSUMAG00000016952	POP1	100	87.854	ENSBTAG00000012596	POP1	100	80.214	Bos_taurus
ENSUMAG00000016952	POP1	100	87.045	ENSCJAG00000015567	POP1	100	79.284	Callithrix_jacchus
ENSUMAG00000016952	POP1	100	93.522	ENSCAFG00000000469	POP1	100	84.893	Canis_familiaris
ENSUMAG00000016952	POP1	100	93.522	ENSCAFG00020026765	POP1	100	86.550	Canis_lupus_dingo
ENSUMAG00000016952	POP1	100	87.045	ENSCHIG00000017066	POP1	100	80.428	Capra_hircus
ENSUMAG00000016952	POP1	100	88.259	ENSTSYG00000003097	POP1	92	88.259	Carlito_syrichta
ENSUMAG00000016952	POP1	99	85.496	ENSCAPG00000007251	POP1	94	85.496	Cavia_aperea
ENSUMAG00000016952	POP1	99	88.664	ENSCPOG00000002901	POP1	91	88.664	Cavia_porcellus
ENSUMAG00000016952	POP1	100	85.020	ENSCCAG00000018939	POP1	94	87.424	Cebus_capucinus
ENSUMAG00000016952	POP1	100	89.474	ENSCATG00000040916	POP1	92	89.474	Cercocebus_atys
ENSUMAG00000016952	POP1	100	88.259	ENSCLAG00000007208	POP1	97	79.574	Chinchilla_lanigera
ENSUMAG00000016952	POP1	89	93.793	ENSCSAG00000012340	POP1	90	93.793	Chlorocebus_sabaeus
ENSUMAG00000016952	POP1	95	90.816	ENSCHOG00000011432	POP1	91	90.816	Choloepus_hoffmanni
ENSUMAG00000016952	POP1	100	71.200	ENSCPBG00000006373	POP1	100	64.175	Chrysemys_picta_bellii
ENSUMAG00000016952	POP1	75	30.744	ENSCING00000008323	-	75	37.354	Ciona_intestinalis
ENSUMAG00000016952	POP1	100	89.879	ENSCANG00000001647	POP1	92	89.879	Colobus_angolensis_palliatus
ENSUMAG00000016952	POP1	100	85.425	ENSCGRG00001017308	Pop1	91	85.425	Cricetulus_griseus_chok1gshd
ENSUMAG00000016952	POP1	100	69.065	ENSCGRG00000010824	Pop1	100	68.798	Cricetulus_griseus_crigri
ENSUMAG00000016952	POP1	100	45.489	ENSCSEG00000008737	POP1	100	45.317	Cynoglossus_semilaevis
ENSUMAG00000016952	POP1	100	51.698	ENSCVAG00000022248	pop1	100	47.204	Cyprinodon_variegatus
ENSUMAG00000016952	POP1	100	86.454	ENSDNOG00000019974	POP1	92	86.454	Dasypus_novemcinctus
ENSUMAG00000016952	POP1	100	67.086	ENSDORG00000015384	Pop1	88	83.436	Dipodomys_ordii
ENSUMAG00000016952	POP1	57	43.195	FBgn0026702	l(1)G0045	62	43.902	Drosophila_melanogaster
ENSUMAG00000016952	POP1	87	78.543	ENSETEG00000007839	POP1	80	78.543	Echinops_telfairi
ENSUMAG00000016952	POP1	53	35.968	ENSEBUG00000014694	-	99	35.771	Eptatretus_burgeri
ENSUMAG00000016952	POP1	100	90.283	ENSEASG00005003189	POP1	98	83.333	Equus_asinus_asinus
ENSUMAG00000016952	POP1	100	90.688	ENSECAG00000024236	POP1	100	83.138	Equus_caballus
ENSUMAG00000016952	POP1	73	83.333	ENSEEUG00000003050	-	70	83.333	Erinaceus_europaeus
ENSUMAG00000016952	POP1	99	53.383	ENSELUG00000003526	pop1	99	47.076	Esox_lucius
ENSUMAG00000016952	POP1	100	91.903	ENSFCAG00000002168	POP1	100	85.575	Felis_catus
ENSUMAG00000016952	POP1	100	64.143	ENSFALG00000005711	POP1	100	59.095	Ficedula_albicollis
ENSUMAG00000016952	POP1	100	87.045	ENSFDAG00000017068	POP1	91	87.045	Fukomys_damarensis
ENSUMAG00000016952	POP1	100	50.752	ENSFHEG00000019518	pop1	100	46.756	Fundulus_heteroclitus
ENSUMAG00000016952	POP1	91	58.824	ENSGMOG00000000659	POP1	87	58.824	Gadus_morhua
ENSUMAG00000016952	POP1	100	51.145	ENSGAFG00000019770	POP1	100	47.273	Gambusia_affinis
ENSUMAG00000016952	POP1	100	48.315	ENSGACG00000003499	pop1	100	45.351	Gasterosteus_aculeatus
ENSUMAG00000016952	POP1	100	68.110	ENSGAGG00000011737	POP1	98	62.863	Gopherus_agassizii
ENSUMAG00000016952	POP1	100	89.474	ENSGGOG00000003176	POP1	92	89.474	Gorilla_gorilla
ENSUMAG00000016952	POP1	100	51.866	ENSHBUG00000021583	pop1	100	46.742	Haplochromis_burtoni
ENSUMAG00000016952	POP1	100	86.235	ENSHGLG00000006029	POP1	100	77.444	Heterocephalus_glaber_female
ENSUMAG00000016952	POP1	100	86.235	ENSHGLG00100016879	POP1	100	77.444	Heterocephalus_glaber_male
ENSUMAG00000016952	POP1	89	68.027	ENSHCOG00000013888	pop1	87	68.027	Hippocampus_comes
ENSUMAG00000016952	POP1	100	50.394	ENSIPUG00000018336	pop1	93	52.427	Ictalurus_punctatus
ENSUMAG00000016952	POP1	100	89.069	ENSSTOG00000011455	POP1	89	89.069	Ictidomys_tridecemlineatus
ENSUMAG00000016952	POP1	100	86.235	ENSJJAG00000013325	Pop1	91	86.235	Jaculus_jaculus
ENSUMAG00000016952	POP1	100	51.128	ENSKMAG00000001346	POP1	100	46.494	Kryptolebias_marmoratus
ENSUMAG00000016952	POP1	88	67.669	ENSLBEG00000024457	POP1	85	64.238	Labrus_bergylta
ENSUMAG00000016952	POP1	93	68.681	ENSLACG00000012498	POP1	91	68.681	Latimeria_chalumnae
ENSUMAG00000016952	POP1	99	53.282	ENSLOCG00000009817	POP1	99	50.963	Lepisosteus_oculatus
ENSUMAG00000016952	POP1	100	86.454	ENSLAFG00000010770	POP1	100	79.923	Loxodonta_africana
ENSUMAG00000016952	POP1	100	89.879	ENSMFAG00000000347	POP1	92	89.879	Macaca_fascicularis
ENSUMAG00000016952	POP1	100	89.879	ENSMNEG00000036870	POP1	92	89.879	Macaca_nemestrina
ENSUMAG00000016952	POP1	100	89.879	ENSMLEG00000034986	POP1	92	89.879	Mandrillus_leucophaeus
ENSUMAG00000016952	POP1	100	49.624	ENSMAMG00000004040	pop1	100	46.168	Mastacembelus_armatus
ENSUMAG00000016952	POP1	100	51.866	ENSMZEG00005025448	pop1	100	46.837	Maylandia_zebra
ENSUMAG00000016952	POP1	100	62.800	ENSMGAG00000012167	POP1	100	57.598	Meleagris_gallopavo
ENSUMAG00000016952	POP1	100	85.425	ENSMAUG00000017537	Pop1	91	85.425	Mesocricetus_auratus
ENSUMAG00000016952	POP1	100	87.045	ENSMICG00000004361	POP1	92	88.259	Microcebus_murinus
ENSUMAG00000016952	POP1	100	84.615	ENSMOCG00000006356	Pop1	91	84.615	Microtus_ochrogaster
ENSUMAG00000016952	POP1	100	45.385	ENSMMOG00000018242	pop1	100	43.327	Mola_mola
ENSUMAG00000016952	POP1	99	71.429	ENSMODG00000006561	POP1	99	66.859	Monodelphis_domestica
ENSUMAG00000016952	POP1	100	49.813	ENSMALG00000012621	POP1	100	47.164	Monopterus_albus
ENSUMAG00000016952	POP1	100	85.020	MGP_CAROLIEiJ_G0019726	Pop1	91	85.020	Mus_caroli
ENSUMAG00000016952	POP1	100	85.425	ENSMUSG00000022325	Pop1	91	85.425	Mus_musculus
ENSUMAG00000016952	POP1	100	84.211	MGP_PahariEiJ_G0019735	Pop1	91	84.211	Mus_pahari
ENSUMAG00000016952	POP1	100	85.830	MGP_SPRETEiJ_G0020622	Pop1	91	85.830	Mus_spretus
ENSUMAG00000016952	POP1	100	94.355	ENSMPUG00000015250	POP1	100	89.515	Mustela_putorius_furo
ENSUMAG00000016952	POP1	100	86.235	ENSMLUG00000010204	POP1	100	77.821	Myotis_lucifugus
ENSUMAG00000016952	POP1	100	89.069	ENSNGAG00000001582	Pop1	91	89.069	Nannospalax_galili
ENSUMAG00000016952	POP1	88	58.904	ENSNBRG00000002356	pop1	86	59.236	Neolamprologus_brichardi
ENSUMAG00000016952	POP1	100	89.474	ENSNLEG00000002541	POP1	92	89.474	Nomascus_leucogenys
ENSUMAG00000016952	POP1	91	81.928	ENSMEUG00000003118	POP1	88	81.928	Notamacropus_eugenii
ENSUMAG00000016952	POP1	100	85.830	ENSOPRG00000007667	POP1	91	85.830	Ochotona_princeps
ENSUMAG00000016952	POP1	100	88.259	ENSODEG00000003984	POP1	91	88.259	Octodon_degus
ENSUMAG00000016952	POP1	100	51.866	ENSONIG00000016445	pop1	100	47.664	Oreochromis_niloticus
ENSUMAG00000016952	POP1	59	67.485	ENSOANG00000001278	-	94	67.879	Ornithorhynchus_anatinus
ENSUMAG00000016952	POP1	100	84.861	ENSOCUG00000017400	POP1	100	77.264	Oryctolagus_cuniculus
ENSUMAG00000016952	POP1	91	63.095	ENSORLG00000002839	pop1	100	47.257	Oryzias_latipes
ENSUMAG00000016952	POP1	89	67.361	ENSORLG00020022450	POP1	87	67.361	Oryzias_latipes_hni
ENSUMAG00000016952	POP1	91	63.690	ENSORLG00015012746	POP1	100	47.353	Oryzias_latipes_hsok
ENSUMAG00000016952	POP1	100	50.800	ENSOMEG00000006915	pop1	99	46.911	Oryzias_melastigma
ENSUMAG00000016952	POP1	100	84.615	ENSOGAG00000001466	POP1	100	77.444	Otolemur_garnettii
ENSUMAG00000016952	POP1	100	90.283	ENSPPAG00000018410	POP1	91	90.283	Pan_paniscus
ENSUMAG00000016952	POP1	100	91.498	ENSPPRG00000005002	POP1	100	85.394	Panthera_pardus
ENSUMAG00000016952	POP1	100	91.498	ENSPTIG00000016527	POP1	100	85.589	Panthera_tigris_altaica
ENSUMAG00000016952	POP1	100	90.283	ENSPTRG00000020458	POP1	92	90.283	Pan_troglodytes
ENSUMAG00000016952	POP1	100	89.879	ENSPANG00000009704	POP1	91	89.879	Papio_anubis
ENSUMAG00000016952	POP1	100	49.376	ENSPKIG00000016325	POP1	100	49.376	Paramormyrops_kingsleyae
ENSUMAG00000016952	POP1	100	69.291	ENSPSIG00000012343	POP1	100	62.042	Pelodiscus_sinensis
ENSUMAG00000016952	POP1	89	61.875	ENSPMGG00000022253	POP1	87	64.375	Periophthalmus_magnuspinnatus
ENSUMAG00000016952	POP1	99	84.146	ENSPEMG00000023633	Pop1	91	84.146	Peromyscus_maniculatus_bairdii
ENSUMAG00000016952	POP1	89	46.635	ENSPMAG00000003209	POP1	99	46.635	Petromyzon_marinus
ENSUMAG00000016952	POP1	99	72.619	ENSPCIG00000012216	POP1	99	65.706	Phascolarctos_cinereus
ENSUMAG00000016952	POP1	100	50.376	ENSPFOG00000012490	POP1	100	47.209	Poecilia_formosa
ENSUMAG00000016952	POP1	100	49.237	ENSPLAG00000004646	POP1	100	46.947	Poecilia_latipinna
ENSUMAG00000016952	POP1	100	51.711	ENSPMEG00000019592	POP1	100	47.714	Poecilia_mexicana
ENSUMAG00000016952	POP1	100	51.128	ENSPREG00000020951	POP1	100	47.564	Poecilia_reticulata
ENSUMAG00000016952	POP1	100	90.688	ENSPPYG00000018777	POP1	92	90.688	Pongo_abelii
ENSUMAG00000016952	POP1	100	84.615	ENSPCAG00000016662	POP1	91	84.615	Procavia_capensis
ENSUMAG00000016952	POP1	100	87.449	ENSPCOG00000019420	POP1	100	80.542	Propithecus_coquereli
ENSUMAG00000016952	POP1	100	88.259	ENSPVAG00000014468	POP1	100	80.818	Pteropus_vampyrus
ENSUMAG00000016952	POP1	88	60.274	ENSPNYG00000004476	pop1	86	60.897	Pundamilia_nyererei
ENSUMAG00000016952	POP1	100	51.145	ENSPNAG00000000265	pop1	94	51.711	Pygocentrus_nattereri
ENSUMAG00000016952	POP1	100	83.401	ENSRNOG00000005243	Pop1	91	83.401	Rattus_norvegicus
ENSUMAG00000016952	POP1	100	89.474	ENSRBIG00000007996	POP1	92	89.474	Rhinopithecus_bieti
ENSUMAG00000016952	POP1	100	89.879	ENSRROG00000012334	POP1	92	89.879	Rhinopithecus_roxellana
ENSUMAG00000016952	POP1	99	90.638	ENSSBOG00000020830	POP1	91	90.638	Saimiri_boliviensis_boliviensis
ENSUMAG00000016952	POP1	99	72.222	ENSSHAG00000000296	POP1	99	66.859	Sarcophilus_harrisii
ENSUMAG00000016952	POP1	99	53.360	ENSSFOG00015007429	pop1	99	48.329	Scleropages_formosus
ENSUMAG00000016952	POP1	91	56.897	ENSSMAG00000010467	POP1	88	59.195	Scophthalmus_maximus
ENSUMAG00000016952	POP1	100	51.311	ENSSDUG00000007817	POP1	100	46.103	Seriola_dumerili
ENSUMAG00000016952	POP1	100	51.128	ENSSLDG00000012565	POP1	100	46.132	Seriola_lalandi_dorsalis
ENSUMAG00000016952	POP1	100	57.445	ENSSPUG00000003550	-	100	57.445	Sphenodon_punctatus
ENSUMAG00000016952	POP1	89	65.385	ENSSPAG00000014955	pop1	86	65.385	Stegastes_partitus
ENSUMAG00000016952	POP1	100	85.830	ENSSSCG00000006078	POP1	100	80.019	Sus_scrofa
ENSUMAG00000016952	POP1	87	82.317	ENSTGUG00000012011	-	86	82.317	Taeniopygia_guttata
ENSUMAG00000016952	POP1	90	59.524	ENSTRUG00000010856	pop1	86	59.524	Takifugu_rubripes
ENSUMAG00000016952	POP1	93	57.071	ENSTNIG00000013297	pop1	91	58.602	Tetraodon_nigroviridis
ENSUMAG00000016952	POP1	95	89.848	ENSTBEG00000014214	POP1	91	89.848	Tupaia_belangeri
ENSUMAG00000016952	POP1	100	86.640	ENSTTRG00000016071	POP1	100	79.630	Tursiops_truncatus
ENSUMAG00000016952	POP1	99	97.114	ENSUAMG00000017309	POP1	100	94.083	Ursus_americanus
ENSUMAG00000016952	POP1	88	85.020	ENSVPAG00000008278	POP1	82	86.131	Vicugna_pacos
ENSUMAG00000016952	POP1	100	92.713	ENSVVUG00000010994	POP1	96	92.713	Vulpes_vulpes
ENSUMAG00000016952	POP1	100	46.992	ENSXCOG00000017043	POP1	100	42.966	Xiphophorus_couchianus
ENSUMAG00000016952	POP1	100	51.527	ENSXMAG00000002472	POP1	100	47.132	Xiphophorus_maculatus