EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000016962 (Gene tree)
Gene ID: 103673213
Gene Symbol: SCAF4
Alias: DKFZp434E098|KIAA1172|SFRS15|SRA4
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 33678 bases
Position: chrKK498671.1:21337859-21371536
Accession: 19304
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000023526	RRM_1	PF00076.22	3e-09	1	1
ENSUMAP00000023518	RRM_1	PF00076.22	3.1e-09	1	1
ENSUMAP00000023497	RRM_1	PF00076.22	3.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000027842	SCAF4-202	3195	-	ENSUMAP00000023518	1064 (aa)	-	-
ENSUMAT00000027850	SCAF4-203	3171	-	ENSUMAP00000023526	1056 (aa)	-	-
ENSUMAT00000027811	SCAF4-201	3264	-	ENSUMAP00000023497	1087 (aa)	-	-
ENSUMAT00000027861	SCAF4-204	456	-	ENSUMAP00000023536	151 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000016962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000016962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000016962	SCAF4	100	91.792	ENSG00000156304	SCAF4	99	91.174	Homo_sapiens
ENSUMAG00000016962	SCAF4	80	53.761	ENSAPOG00000002946	scaf4a	54	57.643	Acanthochromis_polyacanthus
ENSUMAG00000016962	SCAF4	66	49.840	ENSAPOG00000019615	scaf4b	57	67.876	Acanthochromis_polyacanthus
ENSUMAG00000016962	SCAF4	75	96.407	ENSAMEG00000014987	SCAF4	98	96.407	Ailuropoda_melanoleuca
ENSUMAG00000016962	SCAF4	54	62.903	ENSATEG00000006959	SCAF8	51	47.039	Anabas_testudineus
ENSUMAG00000016962	SCAF4	68	49.515	ENSATEG00000011758	scaf4b	59	67.005	Anabas_testudineus
ENSUMAG00000016962	SCAF4	100	78.080	ENSAPLG00000002509	SCAF4	58	84.127	Anas_platyrhynchos
ENSUMAG00000016962	SCAF4	95	72.431	ENSACAG00000002569	SCAF4	51	84.756	Anolis_carolinensis
ENSUMAG00000016962	SCAF4	100	91.182	ENSANAG00000037494	SCAF4	99	90.741	Aotus_nancymaae
ENSUMAG00000016962	SCAF4	51	62.753	ENSACLG00000024833	scaf4b	52	75.974	Astatotilapia_calliptera
ENSUMAG00000016962	SCAF4	93	51.134	ENSAMXG00000008585	scaf4a	59	63.942	Astyanax_mexicanus
ENSUMAG00000016962	SCAF4	100	92.205	ENSBTAG00000018855	SCAF4	99	91.231	Bos_taurus
ENSUMAG00000016962	SCAF4	100	91.189	ENSCJAG00000008993	SCAF4	98	92.552	Callithrix_jacchus
ENSUMAG00000016962	SCAF4	100	95.629	ENSCAFG00000008863	SCAF4	99	95.629	Canis_familiaris
ENSUMAG00000016962	SCAF4	100	93.243	ENSCAFG00020026019	SCAF4	100	95.110	Canis_lupus_dingo
ENSUMAG00000016962	SCAF4	100	91.770	ENSCHIG00000008385	SCAF4	99	90.973	Capra_hircus
ENSUMAG00000016962	SCAF4	100	86.456	ENSTSYG00000011344	SCAF4	98	92.925	Carlito_syrichta
ENSUMAG00000016962	SCAF4	100	88.465	ENSCPOG00000012443	SCAF4	99	87.844	Cavia_porcellus
ENSUMAG00000016962	SCAF4	100	91.600	ENSCCAG00000033727	SCAF4	99	90.981	Cebus_capucinus
ENSUMAG00000016962	SCAF4	100	93.543	ENSCATG00000030379	SCAF4	99	93.543	Cercocebus_atys
ENSUMAG00000016962	SCAF4	100	88.271	ENSCLAG00000006298	SCAF4	100	83.160	Chinchilla_lanigera
ENSUMAG00000016962	SCAF4	100	91.381	ENSCSAG00000009438	SCAF4	99	90.765	Chlorocebus_sabaeus
ENSUMAG00000016962	SCAF4	100	91.784	ENSCANG00000029847	SCAF4	99	91.166	Colobus_angolensis_palliatus
ENSUMAG00000016962	SCAF4	94	89.160	ENSCGRG00001020821	Scaf4	95	88.701	Cricetulus_griseus_chok1gshd
ENSUMAG00000016962	SCAF4	94	89.160	ENSCGRG00000014360	Scaf4	100	80.017	Cricetulus_griseus_crigri
ENSUMAG00000016962	SCAF4	81	51.713	ENSCSEG00000019549	scaf4a	50	56.811	Cynoglossus_semilaevis
ENSUMAG00000016962	SCAF4	100	89.520	ENSDNOG00000019014	SCAF4	93	88.899	Dasypus_novemcinctus
ENSUMAG00000016962	SCAF4	90	86.634	ENSETEG00000000583	SCAF4	91	86.304	Echinops_telfairi
ENSUMAG00000016962	SCAF4	100	94.494	ENSEASG00005007756	SCAF4	99	94.494	Equus_asinus_asinus
ENSUMAG00000016962	SCAF4	100	94.410	ENSECAG00000014248	SCAF4	99	94.410	Equus_caballus
ENSUMAG00000016962	SCAF4	100	95.035	ENSFCAG00000002228	SCAF4	99	95.035	Felis_catus
ENSUMAG00000016962	SCAF4	100	87.381	ENSFDAG00000017780	SCAF4	100	86.517	Fukomys_damarensis
ENSUMAG00000016962	SCAF4	50	59.524	ENSFHEG00000007634	scaf4b	50	78.417	Fundulus_heteroclitus
ENSUMAG00000016962	SCAF4	100	79.269	ENSGALG00000033965	SCAF4	58	84.127	Gallus_gallus
ENSUMAG00000016962	SCAF4	72	53.388	ENSGACG00000020580	scaf4a	52	69.512	Gasterosteus_aculeatus
ENSUMAG00000016962	SCAF4	90	89.185	ENSGGOG00000015557	SCAF4	99	91.121	Gorilla_gorilla
ENSUMAG00000016962	SCAF4	100	89.728	ENSHGLG00000010582	SCAF4	99	89.113	Heterocephalus_glaber_female
ENSUMAG00000016962	SCAF4	100	89.728	ENSHGLG00100009441	SCAF4	100	89.113	Heterocephalus_glaber_male
ENSUMAG00000016962	SCAF4	100	85.159	ENSSTOG00000004450	SCAF4	100	84.717	Ictidomys_tridecemlineatus
ENSUMAG00000016962	SCAF4	100	87.744	ENSJJAG00000019447	Scaf4	99	87.655	Jaculus_jaculus
ENSUMAG00000016962	SCAF4	79	52.843	ENSLBEG00000014675	scaf4a	54	54.823	Labrus_bergylta
ENSUMAG00000016962	SCAF4	81	53.472	ENSLACG00000001394	SCAF8	57	46.296	Latimeria_chalumnae
ENSUMAG00000016962	SCAF4	98	62.489	ENSLACG00000013913	SCAF4	59	68.770	Latimeria_chalumnae
ENSUMAG00000016962	SCAF4	95	59.208	ENSLOCG00000009162	scaf4a	58	67.656	Lepisosteus_oculatus
ENSUMAG00000016962	SCAF4	100	93.784	ENSLAFG00000010710	SCAF4	99	93.676	Loxodonta_africana
ENSUMAG00000016962	SCAF4	100	92.972	ENSMFAG00000037668	SCAF4	99	92.972	Macaca_fascicularis
ENSUMAG00000016962	SCAF4	100	91.148	ENSMMUG00000001712	SCAF4	99	90.535	Macaca_mulatta
ENSUMAG00000016962	SCAF4	100	93.125	ENSMNEG00000032966	SCAF4	99	93.125	Macaca_nemestrina
ENSUMAG00000016962	SCAF4	100	91.484	ENSMLEG00000039674	SCAF4	99	90.781	Mandrillus_leucophaeus
ENSUMAG00000016962	SCAF4	100	78.623	ENSMGAG00000014515	SCAF4	58	84.286	Meleagris_gallopavo
ENSUMAG00000016962	SCAF4	100	87.400	ENSMAUG00000013307	Scaf4	100	87.223	Mesocricetus_auratus
ENSUMAG00000016962	SCAF4	100	93.885	ENSMICG00000005256	SCAF4	99	93.885	Microcebus_murinus
ENSUMAG00000016962	SCAF4	100	84.982	ENSMOCG00000012087	Scaf4	94	90.104	Microtus_ochrogaster
ENSUMAG00000016962	SCAF4	100	87.901	ENSMODG00000021040	SCAF4	99	86.893	Monodelphis_domestica
ENSUMAG00000016962	SCAF4	100	80.826	MGP_CAROLIEiJ_G0020944	Scaf4	94	87.629	Mus_caroli
ENSUMAG00000016962	SCAF4	100	84.046	ENSMUSG00000022983	Scaf4	94	87.953	Mus_musculus
ENSUMAG00000016962	SCAF4	98	86.649	MGP_PahariEiJ_G0016649	Scaf4	95	85.751	Mus_pahari
ENSUMAG00000016962	SCAF4	94	88.889	MGP_SPRETEiJ_G0021850	Scaf4	94	87.855	Mus_spretus
ENSUMAG00000016962	SCAF4	100	93.843	ENSMPUG00000001078	SCAF4	99	93.843	Mustela_putorius_furo
ENSUMAG00000016962	SCAF4	99	78.120	ENSMLUG00000011472	SCAF4	99	76.546	Myotis_lucifugus
ENSUMAG00000016962	SCAF4	100	88.811	ENSNGAG00000005214	Scaf4	99	88.722	Nannospalax_galili
ENSUMAG00000016962	SCAF4	100	91.615	ENSNLEG00000003569	SCAF4	99	90.909	Nomascus_leucogenys
ENSUMAG00000016962	SCAF4	85	95.031	ENSOPRG00000007016	SCAF4	77	89.674	Ochotona_princeps
ENSUMAG00000016962	SCAF4	74	91.536	ENSODEG00000002718	SCAF4	99	82.322	Octodon_degus
ENSUMAG00000016962	SCAF4	72	55.937	ENSONIG00000004687	scaf4a	50	74.390	Oreochromis_niloticus
ENSUMAG00000016962	SCAF4	100	86.766	ENSOCUG00000008336	SCAF4	99	86.766	Oryctolagus_cuniculus
ENSUMAG00000016962	SCAF4	53	42.647	ENSORLG00015017880	scaf4a	52	59.528	Oryzias_latipes_hsok
ENSUMAG00000016962	SCAF4	100	76.879	ENSOGAG00000014653	SCAF4	93	93.552	Otolemur_garnettii
ENSUMAG00000016962	SCAF4	100	91.270	ENSOARG00000013894	SCAF4	98	90.476	Ovis_aries
ENSUMAG00000016962	SCAF4	100	91.792	ENSPPAG00000028535	SCAF4	99	92.343	Pan_paniscus
ENSUMAG00000016962	SCAF4	100	95.115	ENSPPRG00000000635	SCAF4	99	95.115	Panthera_pardus
ENSUMAG00000016962	SCAF4	100	92.998	ENSPTIG00000021578	SCAF4	99	89.856	Panthera_tigris_altaica
ENSUMAG00000016962	SCAF4	100	91.792	ENSPTRG00000013848	SCAF4	99	92.343	Pan_troglodytes
ENSUMAG00000016962	SCAF4	100	91.497	ENSPANG00000017332	SCAF4	99	91.231	Papio_anubis
ENSUMAG00000016962	SCAF4	64	64.120	ENSPKIG00000022408	scaf4a	88	66.876	Paramormyrops_kingsleyae
ENSUMAG00000016962	SCAF4	100	79.780	ENSPSIG00000014242	SCAF4	57	85.507	Pelodiscus_sinensis
ENSUMAG00000016962	SCAF4	62	89.270	ENSPCIG00000028183	SCAF4	91	84.913	Phascolarctos_cinereus
ENSUMAG00000016962	SCAF4	54	59.912	ENSPREG00000013510	scaf4b	57	66.327	Poecilia_reticulata
ENSUMAG00000016962	SCAF4	100	91.623	ENSPPYG00000011355	SCAF4	100	90.917	Pongo_abelii
ENSUMAG00000016962	SCAF4	83	95.113	ENSPCAG00000009998	SCAF4	92	95.113	Procavia_capensis
ENSUMAG00000016962	SCAF4	100	92.986	ENSPCOG00000018710	SCAF4	99	92.896	Propithecus_coquereli
ENSUMAG00000016962	SCAF4	100	93.321	ENSPVAG00000005220	SCAF4	99	92.965	Pteropus_vampyrus
ENSUMAG00000016962	SCAF4	51	61.943	ENSPNYG00000010526	scaf4b	52	75.974	Pundamilia_nyererei
ENSUMAG00000016962	SCAF4	98	82.778	ENSRNOG00000002104	Scaf4	94	80.332	Rattus_norvegicus
ENSUMAG00000016962	SCAF4	100	91.503	ENSRBIG00000040007	SCAF4	99	87.986	Rhinopithecus_bieti
ENSUMAG00000016962	SCAF4	100	92.314	ENSRROG00000029488	SCAF4	99	91.512	Rhinopithecus_roxellana
ENSUMAG00000016962	SCAF4	100	87.971	ENSSHAG00000001581	SCAF4	99	86.593	Sarcophilus_harrisii
ENSUMAG00000016962	SCAF4	88	49.655	ENSSFOG00015006338	scaf4a	54	59.770	Scleropages_formosus
ENSUMAG00000016962	SCAF4	82	49.946	ENSSMAG00000017901	scaf4a	52	52.648	Scophthalmus_maximus
ENSUMAG00000016962	SCAF4	68	61.538	ENSSMAG00000003738	scaf4b	50	78.417	Scophthalmus_maximus
ENSUMAG00000016962	SCAF4	78	48.915	ENSSDUG00000012380	scaf4b	50	78.417	Seriola_dumerili
ENSUMAG00000016962	SCAF4	100	88.624	ENSSARG00000009994	SCAF4	99	88.183	Sorex_araneus
ENSUMAG00000016962	SCAF4	100	90.026	ENSSSCG00000021023	SCAF4	99	89.589	Sus_scrofa
ENSUMAG00000016962	SCAF4	76	71.878	ENSTGUG00000013464	SCAF4	57	85.050	Taeniopygia_guttata
ENSUMAG00000016962	SCAF4	53	58.077	ENSTRUG00000009536	-	60	61.307	Takifugu_rubripes
ENSUMAG00000016962	SCAF4	100	92.965	ENSTTRG00000010963	SCAF4	99	91.897	Tursiops_truncatus
ENSUMAG00000016962	SCAF4	100	94.648	ENSUAMG00000008860	SCAF4	99	94.648	Ursus_americanus
ENSUMAG00000016962	SCAF4	100	95.629	ENSVVUG00000002953	SCAF4	100	95.629	Vulpes_vulpes
ENSUMAG00000016962	SCAF4	99	57.352	ENSXETG00000007351	scaf4	54	81.761	Xenopus_tropicalis