EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000017231 (Gene tree)
Gene ID: 103676456
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 26234 bases
Position: chrKK498718.1:5577351-5603584
Accession: 103676456
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000023678	zf-C2H2	PF00096.26	5.1e-19	1	2
ENSUMAP00000023678	zf-C2H2	PF00096.26	5.1e-19	2	2
ENSUMAP00000023684	zf-C2H2	PF00096.26	5.5e-19	1	2
ENSUMAP00000023684	zf-C2H2	PF00096.26	5.5e-19	2	2
ENSUMAP00000023678	zf-met	PF12874.7	3.7e-05	1	1
ENSUMAP00000023684	zf-met	PF12874.7	3.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000028036	PRDM4-201	3892	XM_008705642	ENSUMAP00000023678	801 (aa)	XP_008703864	UPI0004E0243B
ENSUMAT00000028042	PRDM4-202	3785	-	ENSUMAP00000023684	808 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000017231's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000017231's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000017231	PRDM4	51	40.268	ENSUMAG00000014322	ZFP1	63	41.727

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000017231	PRDM4	100	97.753	ENSG00000110851	PRDM4	100	98.667	Homo_sapiens
ENSUMAG00000017231	PRDM4	99	99.124	ENSAMEG00000016174	PRDM4	99	99.124	Ailuropoda_melanoleuca
ENSUMAG00000017231	PRDM4	99	87.719	ENSAPLG00000009846	PRDM4	99	87.218	Anas_platyrhynchos
ENSUMAG00000017231	PRDM4	100	97.628	ENSANAG00000024800	PRDM4	100	97.628	Aotus_nancymaae
ENSUMAG00000017231	PRDM4	100	97.753	ENSBTAG00000012999	PRDM4	100	97.753	Bos_taurus
ENSUMAG00000017231	PRDM4	100	97.129	ENSCJAG00000015261	PRDM4	100	97.129	Callithrix_jacchus
ENSUMAG00000017231	PRDM4	100	98.876	ENSCAFG00000001788	PRDM4	100	98.876	Canis_familiaris
ENSUMAG00000017231	PRDM4	100	98.876	ENSCAFG00020004916	PRDM4	100	98.876	Canis_lupus_dingo
ENSUMAG00000017231	PRDM4	100	97.753	ENSCHIG00000019409	PRDM4	100	97.753	Capra_hircus
ENSUMAG00000017231	PRDM4	100	97.628	ENSTSYG00000009248	PRDM4	100	97.628	Carlito_syrichta
ENSUMAG00000017231	PRDM4	99	90.488	ENSCAPG00000013937	PRDM4	99	90.989	Cavia_aperea
ENSUMAG00000017231	PRDM4	99	90.435	ENSCPOG00000022385	PRDM4	100	90.435	Cavia_porcellus
ENSUMAG00000017231	PRDM4	100	97.753	ENSCCAG00000036033	PRDM4	100	97.753	Cebus_capucinus
ENSUMAG00000017231	PRDM4	100	97.378	ENSCATG00000044797	PRDM4	100	97.378	Cercocebus_atys
ENSUMAG00000017231	PRDM4	99	92.537	ENSCLAG00000007545	PRDM4	100	92.786	Chinchilla_lanigera
ENSUMAG00000017231	PRDM4	100	97.628	ENSCSAG00000002896	PRDM4	100	97.628	Chlorocebus_sabaeus
ENSUMAG00000017231	PRDM4	76	97.273	ENSCHOG00000001744	PRDM4	86	97.273	Choloepus_hoffmanni
ENSUMAG00000017231	PRDM4	99	88.833	ENSCPBG00000023187	PRDM4	100	88.331	Chrysemys_picta_bellii
ENSUMAG00000017231	PRDM4	100	97.503	ENSCANG00000021804	PRDM4	100	97.503	Colobus_angolensis_palliatus
ENSUMAG00000017231	PRDM4	99	92.786	ENSCGRG00001015102	-	100	92.537	Cricetulus_griseus_chok1gshd
ENSUMAG00000017231	PRDM4	96	92.774	ENSCGRG00000004044	-	100	92.516	Cricetulus_griseus_crigri
ENSUMAG00000017231	PRDM4	100	96.879	ENSDNOG00000032478	PRDM4	100	96.879	Dasypus_novemcinctus
ENSUMAG00000017231	PRDM4	99	81.681	ENSDORG00000015081	-	100	81.807	Dipodomys_ordii
ENSUMAG00000017231	PRDM4	93	45.646	ENSEBUG00000003775	prdm4	99	46.058	Eptatretus_burgeri
ENSUMAG00000017231	PRDM4	100	98.127	ENSECAG00000015423	PRDM4	100	98.127	Equus_caballus
ENSUMAG00000017231	PRDM4	94	93.742	ENSEEUG00000006569	PRDM4	99	93.475	Erinaceus_europaeus
ENSUMAG00000017231	PRDM4	99	60.753	ENSELUG00000015265	prdm4	99	60.389	Esox_lucius
ENSUMAG00000017231	PRDM4	100	99.376	ENSFCAG00000022478	PRDM4	100	99.376	Felis_catus
ENSUMAG00000017231	PRDM4	99	87.829	ENSFALG00000013342	PRDM4	100	87.453	Ficedula_albicollis
ENSUMAG00000017231	PRDM4	100	87.173	ENSGALG00000012619	PRDM4	100	86.675	Gallus_gallus
ENSUMAG00000017231	PRDM4	99	88.471	ENSGAGG00000002763	PRDM4	95	87.970	Gopherus_agassizii
ENSUMAG00000017231	PRDM4	99	97.750	ENSGGOG00000001244	PRDM4	99	97.750	Gorilla_gorilla
ENSUMAG00000017231	PRDM4	99	93.852	ENSHGLG00000004590	PRDM4	98	93.476	Heterocephalus_glaber_female
ENSUMAG00000017231	PRDM4	99	92.795	ENSHGLG00100007464	PRDM4	100	92.422	Heterocephalus_glaber_male
ENSUMAG00000017231	PRDM4	95	61.010	ENSIPUG00000024162	prdm4	93	61.358	Ictalurus_punctatus
ENSUMAG00000017231	PRDM4	100	97.004	ENSSTOG00000016168	PRDM4	100	97.004	Ictidomys_tridecemlineatus
ENSUMAG00000017231	PRDM4	79	96.226	ENSJJAG00000022448	-	95	93.011	Jaculus_jaculus
ENSUMAG00000017231	PRDM4	99	72.772	ENSLACG00000007452	PRDM4	99	73.665	Latimeria_chalumnae
ENSUMAG00000017231	PRDM4	78	53.247	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
ENSUMAG00000017231	PRDM4	98	97.462	ENSLAFG00000001483	PRDM4	100	97.462	Loxodonta_africana
ENSUMAG00000017231	PRDM4	100	97.753	ENSMFAG00000041862	PRDM4	100	97.753	Macaca_fascicularis
ENSUMAG00000017231	PRDM4	100	97.753	ENSMMUG00000015550	PRDM4	100	97.753	Macaca_mulatta
ENSUMAG00000017231	PRDM4	100	97.503	ENSMNEG00000032319	PRDM4	100	97.503	Macaca_nemestrina
ENSUMAG00000017231	PRDM4	100	97.628	ENSMLEG00000039607	PRDM4	100	97.628	Mandrillus_leucophaeus
ENSUMAG00000017231	PRDM4	99	79.875	ENSMGAG00000012815	PRDM4	100	79.375	Meleagris_gallopavo
ENSUMAG00000017231	PRDM4	100	96.629	ENSMICG00000007807	PRDM4	100	96.629	Microcebus_murinus
ENSUMAG00000017231	PRDM4	99	93.734	ENSMOCG00000000753	Prdm4	99	93.484	Microtus_ochrogaster
ENSUMAG00000017231	PRDM4	99	94.228	ENSMUSG00000035529	Prdm4	100	93.977	Mus_musculus
ENSUMAG00000017231	PRDM4	99	93.852	MGP_PahariEiJ_G0031398	Prdm4	100	93.901	Mus_pahari
ENSUMAG00000017231	PRDM4	99	94.981	MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	Mus_spretus
ENSUMAG00000017231	PRDM4	99	92.875	ENSMPUG00000012238	PRDM4	99	92.875	Mustela_putorius_furo
ENSUMAG00000017231	PRDM4	99	97.744	ENSMLUG00000000767	PRDM4	99	97.744	Myotis_lucifugus
ENSUMAG00000017231	PRDM4	99	95.985	ENSNGAG00000018627	Prdm4	100	95.985	Nannospalax_galili
ENSUMAG00000017231	PRDM4	100	97.628	ENSNLEG00000006748	PRDM4	100	97.628	Nomascus_leucogenys
ENSUMAG00000017231	PRDM4	89	90.376	ENSMEUG00000004495	PRDM4	89	90.376	Notamacropus_eugenii
ENSUMAG00000017231	PRDM4	88	95.536	ENSOPRG00000010192	PRDM4	89	95.536	Ochotona_princeps
ENSUMAG00000017231	PRDM4	99	90.875	ENSODEG00000014750	PRDM4	99	90.750	Octodon_degus
ENSUMAG00000017231	PRDM4	100	91.760	ENSOANG00000005526	PRDM4	100	91.760	Ornithorhynchus_anatinus
ENSUMAG00000017231	PRDM4	93	96.996	ENSOCUG00000012859	PRDM4	96	96.996	Oryctolagus_cuniculus
ENSUMAG00000017231	PRDM4	99	97.742	ENSOGAG00000011945	PRDM4	100	97.742	Otolemur_garnettii
ENSUMAG00000017231	PRDM4	100	97.628	ENSOARG00000017955	PRDM4	100	97.628	Ovis_aries
ENSUMAG00000017231	PRDM4	100	97.753	ENSPPAG00000038438	PRDM4	100	97.753	Pan_paniscus
ENSUMAG00000017231	PRDM4	100	99.376	ENSPPRG00000004144	PRDM4	100	99.376	Panthera_pardus
ENSUMAG00000017231	PRDM4	100	99.376	ENSPTIG00000005847	PRDM4	100	99.376	Panthera_tigris_altaica
ENSUMAG00000017231	PRDM4	100	97.753	ENSPTRG00000005400	PRDM4	100	97.753	Pan_troglodytes
ENSUMAG00000017231	PRDM4	100	97.753	ENSPANG00000022084	PRDM4	100	97.753	Papio_anubis
ENSUMAG00000017231	PRDM4	99	60.523	ENSPKIG00000000875	prdm4	99	60.523	Paramormyrops_kingsleyae
ENSUMAG00000017231	PRDM4	91	82.700	ENSPSIG00000012066	PRDM4	100	82.700	Pelodiscus_sinensis
ENSUMAG00000017231	PRDM4	99	95.232	ENSPEMG00000014598	Prdm4	100	95.232	Peromyscus_maniculatus_bairdii
ENSUMAG00000017231	PRDM4	100	89.428	ENSPCIG00000009471	PRDM4	100	89.428	Phascolarctos_cinereus
ENSUMAG00000017231	PRDM4	100	97.878	ENSPPYG00000004913	PRDM4	100	97.878	Pongo_abelii
ENSUMAG00000017231	PRDM4	83	97.917	ENSPCAG00000009987	PRDM4	83	97.917	Procavia_capensis
ENSUMAG00000017231	PRDM4	100	96.629	ENSPCOG00000021060	PRDM4	100	96.629	Propithecus_coquereli
ENSUMAG00000017231	PRDM4	100	97.382	ENSPVAG00000001596	PRDM4	100	97.382	Pteropus_vampyrus
ENSUMAG00000017231	PRDM4	99	94.110	ENSRNOG00000004962	Prdm4	100	93.734	Rattus_norvegicus
ENSUMAG00000017231	PRDM4	100	97.503	ENSRBIG00000035488	PRDM4	100	97.503	Rhinopithecus_bieti
ENSUMAG00000017231	PRDM4	100	97.628	ENSRROG00000012779	PRDM4	100	97.628	Rhinopithecus_roxellana
ENSUMAG00000017231	PRDM4	100	97.628	ENSSBOG00000000403	PRDM4	100	97.628	Saimiri_boliviensis_boliviensis
ENSUMAG00000017231	PRDM4	99	64.039	ENSSFOG00015023358	prdm4	99	63.502	Scleropages_formosus
ENSUMAG00000017231	PRDM4	100	97.878	ENSSSCG00000000160	PRDM4	100	97.878	Sus_scrofa
ENSUMAG00000017231	PRDM4	99	87.845	ENSTGUG00000010962	-	99	87.469	Taeniopygia_guttata
ENSUMAG00000017231	PRDM4	73	89.932	ENSTBEG00000001732	PRDM4	84	89.932	Tupaia_belangeri
ENSUMAG00000017231	PRDM4	100	97.253	ENSTTRG00000011056	PRDM4	100	97.253	Tursiops_truncatus
ENSUMAG00000017231	PRDM4	100	100.000	ENSUAMG00000022796	PRDM4	100	100.000	Ursus_americanus
ENSUMAG00000017231	PRDM4	99	98.369	ENSVPAG00000002215	PRDM4	100	98.369	Vicugna_pacos
ENSUMAG00000017231	PRDM4	100	98.876	ENSVVUG00000023397	PRDM4	100	98.876	Vulpes_vulpes