EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000017419 (Gene tree)
Gene ID: 103673216
Gene Symbol: URB1
Alias: C21orf108|KIAA0539|NPA1
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 72055 bases
Position: chrKK498671.1:21860038-21932092
Accession: 17344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000024666	Npa1	PF11707.8	3.4e-86	1	1
ENSUMAP00000024800	Npa1	PF11707.8	3.9e-86	1	1
ENSUMAP00000024418	Npa1	PF11707.8	4.4e-86	1	1
ENSUMAP00000024704	Npa1	PF11707.8	4.9e-86	1	1
ENSUMAP00000024782	Npa1	PF11707.8	1.5e-85	1	1
ENSUMAP00000024862	Npa1	PF11707.8	2.4e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000029260	URB1-203	6330	-	ENSUMAP00000024704	2109 (aa)	-	-
ENSUMAT00000029351	URB1-204	6015	-	ENSUMAP00000024782	2004 (aa)	-	-
ENSUMAT00000029374	URB1-205	6330	-	ENSUMAP00000024800	2109 (aa)	-	-
ENSUMAT00000029442	URB1-206	5910	-	ENSUMAP00000024862	1969 (aa)	-	-
ENSUMAT00000028923	URB1-201	6270	-	ENSUMAP00000024418	2089 (aa)	-	-
ENSUMAT00000029220	URB1-202	6357	-	ENSUMAP00000024666	2118 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000017419's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000017419's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000017419	URB1	97	83.325	ENSG00000142207	URB1	95	82.115	Homo_sapiens
ENSUMAG00000017419	URB1	96	44.557	ENSAPOG00000020308	urb1	88	45.246	Acanthochromis_polyacanthus
ENSUMAG00000017419	URB1	99	96.774	ENSAMEG00000011998	URB1	95	94.691	Ailuropoda_melanoleuca
ENSUMAG00000017419	URB1	94	46.469	ENSACIG00000003248	urb1	88	46.865	Amphilophus_citrinellus
ENSUMAG00000017419	URB1	97	43.773	ENSAOCG00000010364	urb1	88	43.155	Amphiprion_ocellaris
ENSUMAG00000017419	URB1	91	52.119	ENSAPEG00000010758	urb1	85	55.489	Amphiprion_percula
ENSUMAG00000017419	URB1	95	45.391	ENSATEG00000011790	urb1	86	46.790	Anabas_testudineus
ENSUMAG00000017419	URB1	93	61.765	ENSAPLG00000012791	URB1	91	61.765	Anas_platyrhynchos
ENSUMAG00000017419	URB1	94	54.654	ENSACAG00000002817	URB1	88	54.197	Anolis_carolinensis
ENSUMAG00000017419	URB1	99	81.953	ENSANAG00000024617	URB1	94	81.393	Aotus_nancymaae
ENSUMAG00000017419	URB1	95	45.764	ENSACLG00000024865	urb1	87	46.378	Astatotilapia_calliptera
ENSUMAG00000017419	URB1	94	41.243	ENSAMXG00000012306	urb1	88	41.145	Astyanax_mexicanus
ENSUMAG00000017419	URB1	97	87.379	ENSBTAG00000012412	URB1	93	80.156	Bos_taurus
ENSUMAG00000017419	URB1	98	82.141	ENSCJAG00000009118	URB1	93	81.530	Callithrix_jacchus
ENSUMAG00000017419	URB1	99	87.247	ENSCAFG00000008892	URB1	96	87.247	Canis_familiaris
ENSUMAG00000017419	URB1	99	85.997	ENSCAFG00020025994	-	96	85.949	Canis_lupus_dingo
ENSUMAG00000017419	URB1	99	87.011	ENSCAFG00020025987	-	96	87.011	Canis_lupus_dingo
ENSUMAG00000017419	URB1	97	80.967	ENSCHIG00000015645	URB1	91	80.967	Capra_hircus
ENSUMAG00000017419	URB1	98	81.568	ENSTSYG00000013286	URB1	92	81.469	Carlito_syrichta
ENSUMAG00000017419	URB1	97	76.538	ENSCAPG00000015589	URB1	92	76.488	Cavia_aperea
ENSUMAG00000017419	URB1	97	79.276	ENSCPOG00000006748	URB1	91	79.225	Cavia_porcellus
ENSUMAG00000017419	URB1	99	82.338	ENSCCAG00000021299	URB1	94	81.823	Cebus_capucinus
ENSUMAG00000017419	URB1	98	82.976	ENSCATG00000042630	URB1	94	81.725	Cercocebus_atys
ENSUMAG00000017419	URB1	97	85.662	ENSCLAG00000005262	URB1	87	85.593	Chinchilla_lanigera
ENSUMAG00000017419	URB1	98	80.874	ENSCSAG00000009584	URB1	94	79.631	Chlorocebus_sabaeus
ENSUMAG00000017419	URB1	97	60.486	ENSCPBG00000006454	URB1	90	60.763	Chrysemys_picta_bellii
ENSUMAG00000017419	URB1	98	82.876	ENSCANG00000031088	URB1	95	81.628	Colobus_angolensis_palliatus
ENSUMAG00000017419	URB1	97	76.259	ENSCGRG00001010616	Urb1	93	75.318	Cricetulus_griseus_chok1gshd
ENSUMAG00000017419	URB1	97	75.761	ENSCGRG00000015840	Urb1	93	75.661	Cricetulus_griseus_crigri
ENSUMAG00000017419	URB1	93	50.355	ENSCSEG00000012616	urb1	87	50.980	Cynoglossus_semilaevis
ENSUMAG00000017419	URB1	81	56.092	ENSCVAG00000009076	urb1	96	53.863	Cyprinodon_variegatus
ENSUMAG00000017419	URB1	95	44.417	ENSDARG00000060308	urb1	89	44.884	Danio_rerio
ENSUMAG00000017419	URB1	90	79.036	ENSDNOG00000015586	URB1	99	78.983	Dasypus_novemcinctus
ENSUMAG00000017419	URB1	98	79.150	ENSDORG00000006735	Urb1	92	79.150	Dipodomys_ordii
ENSUMAG00000017419	URB1	92	82.056	ENSETEG00000009080	URB1	86	81.909	Echinops_telfairi
ENSUMAG00000017419	URB1	98	84.384	ENSEASG00005007711	URB1	95	83.244	Equus_asinus_asinus
ENSUMAG00000017419	URB1	95	91.367	ENSECAG00000013206	URB1	93	92.102	Equus_caballus
ENSUMAG00000017419	URB1	91	56.280	ENSELUG00000020516	urb1	82	56.635	Esox_lucius
ENSUMAG00000017419	URB1	98	87.375	ENSFCAG00000002177	URB1	95	86.188	Felis_catus
ENSUMAG00000017419	URB1	98	50.879	ENSFALG00000004636	URB1	87	64.320	Ficedula_albicollis
ENSUMAG00000017419	URB1	97	79.013	ENSFDAG00000007288	URB1	88	78.152	Fukomys_damarensis
ENSUMAG00000017419	URB1	93	43.690	ENSFHEG00000000202	urb1	81	55.342	Fundulus_heteroclitus
ENSUMAG00000017419	URB1	88	47.161	ENSGMOG00000001838	urb1	82	47.873	Gadus_morhua
ENSUMAG00000017419	URB1	98	56.694	ENSGALG00000015887	URB1	91	57.016	Gallus_gallus
ENSUMAG00000017419	URB1	90	55.314	ENSGAFG00000020694	urb1	85	56.364	Gambusia_affinis
ENSUMAG00000017419	URB1	94	46.301	ENSGACG00000011703	urb1	88	46.927	Gasterosteus_aculeatus
ENSUMAG00000017419	URB1	97	59.644	ENSGAGG00000022544	URB1	95	57.811	Gopherus_agassizii
ENSUMAG00000017419	URB1	98	83.175	ENSGGOG00000000285	URB1	95	81.969	Gorilla_gorilla
ENSUMAG00000017419	URB1	95	45.764	ENSHBUG00000001904	urb1	87	46.378	Haplochromis_burtoni
ENSUMAG00000017419	URB1	97	81.148	ENSHGLG00000004907	URB1	94	76.901	Heterocephalus_glaber_female
ENSUMAG00000017419	URB1	97	83.961	ENSHGLG00100010749	URB1	94	77.487	Heterocephalus_glaber_male
ENSUMAG00000017419	URB1	78	53.797	ENSHCOG00000018683	urb1	96	54.701	Hippocampus_comes
ENSUMAG00000017419	URB1	91	49.704	ENSIPUG00000014721	urb1	82	49.704	Ictalurus_punctatus
ENSUMAG00000017419	URB1	98	81.107	ENSSTOG00000004539	URB1	95	79.600	Ictidomys_tridecemlineatus
ENSUMAG00000017419	URB1	96	42.408	ENSKMAG00000006001	urb1	92	54.751	Kryptolebias_marmoratus
ENSUMAG00000017419	URB1	95	43.453	ENSLBEG00000027208	urb1	89	52.695	Labrus_bergylta
ENSUMAG00000017419	URB1	97	49.559	ENSLACG00000017059	URB1	87	50.075	Latimeria_chalumnae
ENSUMAG00000017419	URB1	94	47.419	ENSLOCG00000009190	urb1	87	47.950	Lepisosteus_oculatus
ENSUMAG00000017419	URB1	97	79.990	ENSLAFG00000010407	URB1	91	79.890	Loxodonta_africana
ENSUMAG00000017419	URB1	98	82.876	ENSMFAG00000034391	URB1	91	81.628	Macaca_fascicularis
ENSUMAG00000017419	URB1	98	82.626	ENSMMUG00000010295	URB1	94	81.384	Macaca_mulatta
ENSUMAG00000017419	URB1	98	81.328	ENSMNEG00000032981	URB1	94	80.068	Macaca_nemestrina
ENSUMAG00000017419	URB1	98	82.876	ENSMLEG00000041435	URB1	94	81.628	Mandrillus_leucophaeus
ENSUMAG00000017419	URB1	93	45.888	ENSMAMG00000011238	urb1	80	56.055	Mastacembelus_armatus
ENSUMAG00000017419	URB1	94	42.555	ENSMZEG00005011862	urb1	88	49.880	Maylandia_zebra
ENSUMAG00000017419	URB1	98	56.552	ENSMGAG00000014512	URB1	92	58.530	Meleagris_gallopavo
ENSUMAG00000017419	URB1	91	80.408	ENSMAUG00000010516	Urb1	90	79.225	Mesocricetus_auratus
ENSUMAG00000017419	URB1	99	80.595	ENSMICG00000016424	URB1	93	80.449	Microcebus_murinus
ENSUMAG00000017419	URB1	96	74.699	ENSMOCG00000012613	Urb1	91	74.551	Microtus_ochrogaster
ENSUMAG00000017419	URB1	98	64.660	ENSMODG00000021076	URB1	91	65.144	Monodelphis_domestica
ENSUMAG00000017419	URB1	95	44.306	ENSMALG00000017411	urb1	88	52.585	Monopterus_albus
ENSUMAG00000017419	URB1	97	75.299	MGP_CAROLIEiJ_G0020948	Urb1	90	75.187	Mus_caroli
ENSUMAG00000017419	URB1	97	75.699	ENSMUSG00000039929	Urb1	91	75.522	Mus_musculus
ENSUMAG00000017419	URB1	99	73.896	MGP_PahariEiJ_G0016653	Urb1	92	74.023	Mus_pahari
ENSUMAG00000017419	URB1	97	75.349	MGP_SPRETEiJ_G0021854	Urb1	91	75.124	Mus_spretus
ENSUMAG00000017419	URB1	99	89.286	ENSMPUG00000001123	URB1	94	88.071	Mustela_putorius_furo
ENSUMAG00000017419	URB1	99	74.414	ENSNGAG00000001905	Urb1	93	74.365	Nannospalax_galili
ENSUMAG00000017419	URB1	77	45.018	ENSNBRG00000001049	urb1	84	45.389	Neolamprologus_brichardi
ENSUMAG00000017419	URB1	97	80.779	ENSNLEG00000026872	URB1	95	79.630	Nomascus_leucogenys
ENSUMAG00000017419	URB1	90	71.371	ENSMEUG00000010828	URB1	84	66.053	Notamacropus_eugenii
ENSUMAG00000017419	URB1	99	73.743	ENSOPRG00000013482	URB1	94	73.743	Ochotona_princeps
ENSUMAG00000017419	URB1	99	76.830	ENSODEG00000002587	URB1	92	78.285	Octodon_degus
ENSUMAG00000017419	URB1	95	46.007	ENSONIG00000005599	urb1	82	55.489	Oreochromis_niloticus
ENSUMAG00000017419	URB1	99	78.929	ENSOCUG00000009381	URB1	94	78.929	Oryctolagus_cuniculus
ENSUMAG00000017419	URB1	96	45.455	ENSORLG00000003429	urb1	83	56.159	Oryzias_latipes
ENSUMAG00000017419	URB1	96	45.235	ENSORLG00020013785	urb1	84	54.762	Oryzias_latipes_hni
ENSUMAG00000017419	URB1	88	53.819	ENSORLG00015019421	urb1	83	53.103	Oryzias_latipes_hsok
ENSUMAG00000017419	URB1	85	54.938	ENSOMEG00000002094	urb1	97	56.679	Oryzias_melastigma
ENSUMAG00000017419	URB1	98	81.733	ENSOGAG00000017140	URB1	92	81.584	Otolemur_garnettii
ENSUMAG00000017419	URB1	92	86.461	ENSOARG00000013679	URB1	85	86.461	Ovis_aries
ENSUMAG00000017419	URB1	98	83.475	ENSPPAG00000003423	URB1	95	82.261	Pan_paniscus
ENSUMAG00000017419	URB1	98	87.575	ENSPPRG00000023131	URB1	95	86.341	Panthera_pardus
ENSUMAG00000017419	URB1	99	82.927	ENSPTIG00000016125	URB1	100	82.692	Panthera_tigris_altaica
ENSUMAG00000017419	URB1	98	83.325	ENSPTRG00000013852	URB1	95	82.115	Pan_troglodytes
ENSUMAG00000017419	URB1	98	83.075	ENSPANG00000021964	URB1	92	83.075	Papio_anubis
ENSUMAG00000017419	URB1	94	48.098	ENSPKIG00000003683	urb1	86	48.113	Paramormyrops_kingsleyae
ENSUMAG00000017419	URB1	99	74.805	ENSPEMG00000021205	Urb1	92	74.805	Peromyscus_maniculatus_bairdii
ENSUMAG00000017419	URB1	86	39.535	ENSPMAG00000009733	URB1	94	39.973	Petromyzon_marinus
ENSUMAG00000017419	URB1	98	64.453	ENSPCIG00000016350	URB1	92	64.453	Phascolarctos_cinereus
ENSUMAG00000017419	URB1	93	44.922	ENSPLAG00000004371	urb1	89	45.158	Poecilia_latipinna
ENSUMAG00000017419	URB1	94	45.653	ENSPMEG00000006634	urb1	88	45.651	Poecilia_mexicana
ENSUMAG00000017419	URB1	94	45.699	ENSPREG00000013453	urb1	88	45.875	Poecilia_reticulata
ENSUMAG00000017419	URB1	97	82.676	ENSPPYG00000011359	URB1	93	82.676	Pongo_abelii
ENSUMAG00000017419	URB1	97	68.082	ENSPCAG00000007430	URB1	86	73.072	Procavia_capensis
ENSUMAG00000017419	URB1	99	81.463	ENSPCOG00000022695	URB1	95	81.512	Propithecus_coquereli
ENSUMAG00000017419	URB1	99	81.256	ENSPVAG00000000889	URB1	93	81.256	Pteropus_vampyrus
ENSUMAG00000017419	URB1	94	45.222	ENSPNYG00000010589	urb1	88	45.478	Pundamilia_nyererei
ENSUMAG00000017419	URB1	94	41.532	ENSPNAG00000019324	urb1	88	41.113	Pygocentrus_nattereri
ENSUMAG00000017419	URB1	98	73.669	ENSRNOG00000002080	Urb1	91	73.615	Rattus_norvegicus
ENSUMAG00000017419	URB1	98	82.227	ENSRBIG00000033122	URB1	94	80.945	Rhinopithecus_bieti
ENSUMAG00000017419	URB1	98	82.177	ENSRROG00000040237	URB1	94	80.897	Rhinopithecus_roxellana
ENSUMAG00000017419	URB1	99	82.150	ENSSBOG00000027672	URB1	94	81.539	Saimiri_boliviensis_boliviensis
ENSUMAG00000017419	URB1	99	63.858	ENSSHAG00000005140	URB1	93	63.385	Sarcophilus_harrisii
ENSUMAG00000017419	URB1	94	46.939	ENSSFOG00015000339	urb1	88	57.464	Scleropages_formosus
ENSUMAG00000017419	URB1	94	45.637	ENSSMAG00000003782	urb1	82	55.928	Scophthalmus_maximus
ENSUMAG00000017419	URB1	93	47.271	ENSSDUG00000012313	urb1	87	47.271	Seriola_dumerili
ENSUMAG00000017419	URB1	93	47.171	ENSSLDG00000023179	urb1	87	47.171	Seriola_lalandi_dorsalis
ENSUMAG00000017419	URB1	98	56.339	ENSSPUG00000012447	URB1	91	56.517	Sphenodon_punctatus
ENSUMAG00000017419	URB1	94	45.848	ENSSPAG00000006325	urb1	88	45.770	Stegastes_partitus
ENSUMAG00000017419	URB1	99	81.601	ENSSSCG00000032024	URB1	93	81.406	Sus_scrofa
ENSUMAG00000017419	URB1	78	56.433	ENSTGUG00000013442	URB1	96	63.544	Taeniopygia_guttata
ENSUMAG00000017419	URB1	96	44.585	ENSTRUG00000009372	urb1	83	54.031	Takifugu_rubripes
ENSUMAG00000017419	URB1	94	44.778	ENSTNIG00000016277	urb1	88	45.023	Tetraodon_nigroviridis
ENSUMAG00000017419	URB1	80	82.456	ENSTBEG00000010044	URB1	71	83.824	Tupaia_belangeri
ENSUMAG00000017419	URB1	90	82.723	ENSTTRG00000007712	URB1	85	82.723	Tursiops_truncatus
ENSUMAG00000017419	URB1	99	100.000	ENSUAMG00000012231	URB1	93	98.353	Ursus_americanus
ENSUMAG00000017419	URB1	66	90.476	ENSVPAG00000001164	URB1	61	90.476	Vicugna_pacos
ENSUMAG00000017419	URB1	99	86.782	ENSVVUG00000000551	URB1	96	86.782	Vulpes_vulpes
ENSUMAG00000017419	URB1	95	51.603	ENSXETG00000009895	urb1	83	60.914	Xenopus_tropicalis
ENSUMAG00000017419	URB1	94	44.113	ENSXCOG00000005500	urb1	87	45.885	Xiphophorus_couchianus
ENSUMAG00000017419	URB1	94	44.142	ENSXMAG00000007253	urb1	87	45.963	Xiphophorus_maculatus