EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000017697 (Gene tree)
Gene ID: 103661726
Gene Symbol: CASC3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 21476 bases
Position: chrKK498512.1:1161286-1182761
Accession: 103661726
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000024449	Btz	PF09405.10	6e-19	1	1
ENSUMAP00000024436	Btz	PF09405.10	6.9e-19	1	1
ENSUMAP00000024416	Btz	PF09405.10	8.3e-19	1	1
ENSUMAP00000024406	Btz	PF09405.10	9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000028911	CASC3-201	3963	XM_008689411	ENSUMAP00000024406	630 (aa)	XP_008687633	UPI0004DFF2C4
ENSUMAT00000028959	CASC3-204	1593	-	ENSUMAP00000024449	530 (aa)	-	-
ENSUMAT00000028921	CASC3-202	3864	-	ENSUMAP00000024416	597 (aa)	-	-
ENSUMAT00000028943	CASC3-203	1863	-	ENSUMAP00000024436	620 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000017697's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03013	RNA transport	KEGG
umr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000017697's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000017697	CASC3	100	94.330	ENSG00000108349	CASC3	100	93.939	Homo_sapiens
ENSUMAG00000017697	CASC3	83	68.182	ENSAPOG00000008467	casc3	69	52.581	Acanthochromis_polyacanthus
ENSUMAG00000017697	CASC3	99	98.243	ENSAMEG00000007764	CASC3	89	98.243	Ailuropoda_melanoleuca
ENSUMAG00000017697	CASC3	91	50.835	ENSACIG00000000720	casc3	83	50.657	Amphilophus_citrinellus
ENSUMAG00000017697	CASC3	86	64.430	ENSAOCG00000016676	casc3	69	52.941	Amphiprion_ocellaris
ENSUMAG00000017697	CASC3	86	64.430	ENSAPEG00000006787	casc3	69	52.941	Amphiprion_percula
ENSUMAG00000017697	CASC3	85	64.828	ENSATEG00000017196	casc3	56	64.828	Anabas_testudineus
ENSUMAG00000017697	CASC3	99	72.998	ENSACAG00000002674	CASC3	87	73.312	Anolis_carolinensis
ENSUMAG00000017697	CASC3	100	87.906	ENSANAG00000034820	-	89	87.906	Aotus_nancymaae
ENSUMAG00000017697	CASC3	66	97.170	ENSANAG00000031954	-	83	97.170	Aotus_nancymaae
ENSUMAG00000017697	CASC3	85	67.133	ENSACLG00000016198	casc3	60	58.289	Astatotilapia_calliptera
ENSUMAG00000017697	CASC3	89	60.759	ENSAMXG00000032452	casc3	62	58.974	Astyanax_mexicanus
ENSUMAG00000017697	CASC3	100	96.907	ENSBTAG00000006250	CASC3	89	94.569	Bos_taurus
ENSUMAG00000017697	CASC3	100	93.814	ENSCJAG00000016032	CASC3	89	92.173	Callithrix_jacchus
ENSUMAG00000017697	CASC3	100	98.454	ENSCAFG00000016141	CASC3	89	97.444	Canis_familiaris
ENSUMAG00000017697	CASC3	100	98.454	ENSCAFG00020018882	CASC3	88	97.407	Canis_lupus_dingo
ENSUMAG00000017697	CASC3	98	94.023	ENSCHIG00000006338	CASC3	88	94.023	Capra_hircus
ENSUMAG00000017697	CASC3	100	95.361	ENSTSYG00000002975	CASC3	89	94.728	Carlito_syrichta
ENSUMAG00000017697	CASC3	100	90.206	ENSCAPG00000010514	CASC3	100	88.961	Cavia_aperea
ENSUMAG00000017697	CASC3	100	90.722	ENSCPOG00000015139	CASC3	90	89.137	Cavia_porcellus
ENSUMAG00000017697	CASC3	100	93.814	ENSCCAG00000033620	CASC3	89	93.301	Cebus_capucinus
ENSUMAG00000017697	CASC3	99	94.845	ENSCATG00000033593	CASC3	89	94.613	Cercocebus_atys
ENSUMAG00000017697	CASC3	99	91.710	ENSCLAG00000013730	CASC3	89	90.096	Chinchilla_lanigera
ENSUMAG00000017697	CASC3	99	94.845	ENSCSAG00000002777	CASC3	89	94.577	Chlorocebus_sabaeus
ENSUMAG00000017697	CASC3	99	77.778	ENSCPBG00000004750	CASC3	95	78.100	Chrysemys_picta_bellii
ENSUMAG00000017697	CASC3	99	94.845	ENSCANG00000008814	CASC3	89	94.418	Colobus_angolensis_palliatus
ENSUMAG00000017697	CASC3	100	94.845	ENSCGRG00001014706	Casc3	89	92.492	Cricetulus_griseus_chok1gshd
ENSUMAG00000017697	CASC3	100	94.845	ENSCGRG00000001952	Casc3	97	91.772	Cricetulus_griseus_crigri
ENSUMAG00000017697	CASC3	85	66.434	ENSCSEG00000010047	casc3	56	62.500	Cynoglossus_semilaevis
ENSUMAG00000017697	CASC3	85	67.626	ENSCVAG00000014935	casc3	66	55.305	Cyprinodon_variegatus
ENSUMAG00000017697	CASC3	84	70.139	ENSDARG00000029911	casc3	58	70.139	Danio_rerio
ENSUMAG00000017697	CASC3	100	95.876	ENSDNOG00000017249	CASC3	86	93.770	Dasypus_novemcinctus
ENSUMAG00000017697	CASC3	98	85.875	ENSETEG00000013720	CASC3	89	85.942	Echinops_telfairi
ENSUMAG00000017697	CASC3	87	51.678	ENSEBUG00000010654	casc3	89	37.109	Eptatretus_burgeri
ENSUMAG00000017697	CASC3	100	96.907	ENSEASG00005002909	CASC3	87	97.273	Equus_asinus_asinus
ENSUMAG00000017697	CASC3	99	96.006	ENSECAG00000019947	CASC3	78	96.006	Equus_caballus
ENSUMAG00000017697	CASC3	72	90.046	ENSEEUG00000014253	CASC3	85	90.046	Erinaceus_europaeus
ENSUMAG00000017697	CASC3	90	59.649	ENSELUG00000015093	casc3	60	59.649	Esox_lucius
ENSUMAG00000017697	CASC3	100	97.938	ENSFCAG00000014998	CASC3	89	97.125	Felis_catus
ENSUMAG00000017697	CASC3	98	79.897	ENSFALG00000000412	CASC3	98	73.709	Ficedula_albicollis
ENSUMAG00000017697	CASC3	100	90.722	ENSFDAG00000020696	CASC3	96	87.241	Fukomys_damarensis
ENSUMAG00000017697	CASC3	92	69.065	ENSFHEG00000015793	casc3	69	54.019	Fundulus_heteroclitus
ENSUMAG00000017697	CASC3	99	76.555	ENSGALG00000031813	CASC3	95	76.555	Gallus_gallus
ENSUMAG00000017697	CASC3	86	62.874	ENSGAFG00000017148	casc3	52	61.364	Gambusia_affinis
ENSUMAG00000017697	CASC3	98	79.057	ENSGAGG00000008432	CASC3	91	83.028	Gopherus_agassizii
ENSUMAG00000017697	CASC3	100	93.814	ENSGGOG00000005067	CASC3	89	94.249	Gorilla_gorilla
ENSUMAG00000017697	CASC3	85	67.832	ENSHBUG00000013155	casc3	60	58.824	Haplochromis_burtoni
ENSUMAG00000017697	CASC3	98	89.406	ENSHGLG00000012117	CASC3	89	89.457	Heterocephalus_glaber_female
ENSUMAG00000017697	CASC3	99	89.457	ENSHGLG00100002268	CASC3	100	89.457	Heterocephalus_glaber_male
ENSUMAG00000017697	CASC3	85	64.336	ENSHCOG00000002664	casc3	58	61.538	Hippocampus_comes
ENSUMAG00000017697	CASC3	95	59.215	ENSIPUG00000002679	casc3	91	47.653	Ictalurus_punctatus
ENSUMAG00000017697	CASC3	99	96.373	ENSSTOG00000006374	CASC3	89	92.971	Ictidomys_tridecemlineatus
ENSUMAG00000017697	CASC3	100	94.330	ENSJJAG00000023525	Casc3	89	92.013	Jaculus_jaculus
ENSUMAG00000017697	CASC3	75	75.789	ENSKMAG00000019507	casc3	81	49.474	Kryptolebias_marmoratus
ENSUMAG00000017697	CASC3	92	65.035	ENSLBEG00000005435	casc3	57	58.427	Labrus_bergylta
ENSUMAG00000017697	CASC3	97	67.868	ENSLACG00000013200	CASC3	87	59.006	Latimeria_chalumnae
ENSUMAG00000017697	CASC3	69	73.430	ENSLOCG00000013518	casc3	63	70.531	Lepisosteus_oculatus
ENSUMAG00000017697	CASC3	100	95.361	ENSLAFG00000000606	CASC3	89	93.450	Loxodonta_africana
ENSUMAG00000017697	CASC3	99	94.845	ENSMFAG00000041496	CASC3	89	94.577	Macaca_fascicularis
ENSUMAG00000017697	CASC3	99	94.845	ENSMMUG00000045187	CASC3	89	94.577	Macaca_mulatta
ENSUMAG00000017697	CASC3	100	94.479	ENSMLEG00000029049	CASC3	100	94.479	Mandrillus_leucophaeus
ENSUMAG00000017697	CASC3	89	63.190	ENSMAMG00000005235	casc3	68	53.878	Mastacembelus_armatus
ENSUMAG00000017697	CASC3	85	67.133	ENSMZEG00005003815	casc3	60	58.289	Maylandia_zebra
ENSUMAG00000017697	CASC3	96	75.329	ENSMGAG00000013247	CASC3	99	73.821	Meleagris_gallopavo
ENSUMAG00000017697	CASC3	83	95.050	ENSMAUG00000006023	Casc3	80	91.036	Mesocricetus_auratus
ENSUMAG00000017697	CASC3	99	93.782	ENSMICG00000003321	CASC3	89	93.610	Microcebus_murinus
ENSUMAG00000017697	CASC3	100	94.845	ENSMOCG00000013644	Casc3	89	90.415	Microtus_ochrogaster
ENSUMAG00000017697	CASC3	85	64.748	ENSMMOG00000014339	casc3	84	45.525	Mola_mola
ENSUMAG00000017697	CASC3	98	83.832	ENSMODG00000013044	CASC3	82	80.732	Monodelphis_domestica
ENSUMAG00000017697	CASC3	91	48.555	ENSMALG00000019771	casc3	83	48.289	Monopterus_albus
ENSUMAG00000017697	CASC3	100	92.784	MGP_CAROLIEiJ_G0017099	Casc3	89	90.256	Mus_caroli
ENSUMAG00000017697	CASC3	100	92.784	ENSMUSG00000078676	Casc3	89	89.457	Mus_musculus
ENSUMAG00000017697	CASC3	100	92.784	MGP_SPRETEiJ_G0017943	Casc3	89	89.617	Mus_spretus
ENSUMAG00000017697	CASC3	100	97.938	ENSMPUG00000014903	CASC3	89	96.645	Mustela_putorius_furo
ENSUMAG00000017697	CASC3	100	94.845	ENSMLUG00000010520	CASC3	89	92.357	Myotis_lucifugus
ENSUMAG00000017697	CASC3	98	91.172	ENSNGAG00000023121	Casc3	89	90.575	Nannospalax_galili
ENSUMAG00000017697	CASC3	100	93.814	ENSNLEG00000001598	CASC3	89	93.291	Nomascus_leucogenys
ENSUMAG00000017697	CASC3	80	91.975	ENSMEUG00000015662	CASC3	85	72.321	Notamacropus_eugenii
ENSUMAG00000017697	CASC3	72	90.046	ENSOPRG00000007240	-	68	100.000	Ochotona_princeps
ENSUMAG00000017697	CASC3	99	88.339	ENSODEG00000017858	CASC3	89	89.297	Octodon_degus
ENSUMAG00000017697	CASC3	86	67.832	ENSONIG00000009337	casc3	90	50.236	Oreochromis_niloticus
ENSUMAG00000017697	CASC3	88	54.101	ENSOANG00000003499	-	87	69.281	Ornithorhynchus_anatinus
ENSUMAG00000017697	CASC3	99	95.855	ENSOCUG00000002954	CASC3	89	93.770	Oryctolagus_cuniculus
ENSUMAG00000017697	CASC3	86	60.265	ENSORLG00000023125	casc3	64	55.495	Oryzias_latipes
ENSUMAG00000017697	CASC3	100	94.845	ENSOGAG00000034486	CASC3	87	93.891	Otolemur_garnettii
ENSUMAG00000017697	CASC3	98	94.703	ENSOARG00000013239	CASC3	89	94.728	Ovis_aries
ENSUMAG00000017697	CASC3	100	94.330	ENSPPAG00000035069	CASC3	89	94.409	Pan_paniscus
ENSUMAG00000017697	CASC3	99	97.125	ENSPPRG00000023670	CASC3	89	97.125	Panthera_pardus
ENSUMAG00000017697	CASC3	99	96.645	ENSPTIG00000010891	CASC3	89	96.645	Panthera_tigris_altaica
ENSUMAG00000017697	CASC3	99	94.845	ENSPANG00000021708	CASC3	89	94.577	Papio_anubis
ENSUMAG00000017697	CASC3	92	64.189	ENSPKIG00000023186	casc3	61	59.259	Paramormyrops_kingsleyae
ENSUMAG00000017697	CASC3	99	95.855	ENSPEMG00000009774	Casc3	89	91.853	Peromyscus_maniculatus_bairdii
ENSUMAG00000017697	CASC3	99	84.395	ENSPCIG00000025678	CASC3	90	84.076	Phascolarctos_cinereus
ENSUMAG00000017697	CASC3	92	70.803	ENSPFOG00000017632	casc3	90	48.270	Poecilia_formosa
ENSUMAG00000017697	CASC3	97	63.529	ENSPLAG00000005268	casc3	69	54.693	Poecilia_latipinna
ENSUMAG00000017697	CASC3	71	47.696	ENSPMEG00000010299	casc3	73	48.730	Poecilia_mexicana
ENSUMAG00000017697	CASC3	85	65.000	ENSPREG00000011856	casc3	82	50.536	Poecilia_reticulata
ENSUMAG00000017697	CASC3	100	94.330	ENSPPYG00000008467	CASC3	89	92.949	Pongo_abelii
ENSUMAG00000017697	CASC3	99	94.301	ENSPCOG00000008183	CASC3	89	93.450	Propithecus_coquereli
ENSUMAG00000017697	CASC3	100	95.876	ENSPVAG00000008556	CASC3	89	95.048	Pteropus_vampyrus
ENSUMAG00000017697	CASC3	85	67.832	ENSPNYG00000011962	casc3	60	58.824	Pundamilia_nyererei
ENSUMAG00000017697	CASC3	93	60.443	ENSPNAG00000015928	casc3	64	58.654	Pygocentrus_nattereri
ENSUMAG00000017697	CASC3	99	91.729	ENSRNOG00000009716	Casc3	88	92.000	Rattus_norvegicus
ENSUMAG00000017697	CASC3	99	94.845	ENSRBIG00000033289	CASC3	88	94.652	Rhinopithecus_bieti
ENSUMAG00000017697	CASC3	99	94.845	ENSRROG00000022337	CASC3	89	94.737	Rhinopithecus_roxellana
ENSUMAG00000017697	CASC3	100	93.814	ENSSBOG00000031406	CASC3	98	93.366	Saimiri_boliviensis_boliviensis
ENSUMAG00000017697	CASC3	98	90.576	ENSSHAG00000013338	CASC3	100	84.236	Sarcophilus_harrisii
ENSUMAG00000017697	CASC3	85	69.595	ENSSFOG00015002645	casc3	59	69.595	Scleropages_formosus
ENSUMAG00000017697	CASC3	91	65.278	ENSSMAG00000016096	casc3	60	56.085	Scophthalmus_maximus
ENSUMAG00000017697	CASC3	90	61.818	ENSSDUG00000016893	casc3	87	43.333	Seriola_dumerili
ENSUMAG00000017697	CASC3	95	50.685	ENSSLDG00000020308	casc3	70	65.468	Seriola_lalandi_dorsalis
ENSUMAG00000017697	CASC3	95	82.631	ENSSARG00000010378	CASC3	98	82.631	Sorex_araneus
ENSUMAG00000017697	CASC3	86	67.133	ENSSPAG00000023008	casc3	69	52.941	Stegastes_partitus
ENSUMAG00000017697	CASC3	100	95.876	ENSSSCG00000017477	CASC3	100	93.681	Sus_scrofa
ENSUMAG00000017697	CASC3	84	74.432	ENSTGUG00000002300	CASC3	99	74.432	Taeniopygia_guttata
ENSUMAG00000017697	CASC3	85	64.789	ENSTRUG00000000673	casc3	60	60.241	Takifugu_rubripes
ENSUMAG00000017697	CASC3	98	47.508	ENSTNIG00000003208	casc3	90	47.819	Tetraodon_nigroviridis
ENSUMAG00000017697	CASC3	68	97.170	ENSTBEG00000017459	CASC3	57	97.170	Tupaia_belangeri
ENSUMAG00000017697	CASC3	89	95.238	ENSTTRG00000016896	CASC3	88	94.690	Tursiops_truncatus
ENSUMAG00000017697	CASC3	100	99.410	ENSUAMG00000015116	CASC3	88	99.190	Ursus_americanus
ENSUMAG00000017697	CASC3	72	98.319	ENSVPAG00000000799	CASC3	61	98.319	Vicugna_pacos
ENSUMAG00000017697	CASC3	100	98.454	ENSVVUG00000000997	CASC3	89	97.444	Vulpes_vulpes
ENSUMAG00000017697	CASC3	98	59.713	ENSXETG00000024395	casc3	89	60.191	Xenopus_tropicalis
ENSUMAG00000017697	CASC3	97	63.095	ENSXMAG00000013937	casc3	69	52.716	Xiphophorus_maculatus