EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSUMAG00000018041 (Gene tree)
Gene ID
103668687
Gene Symbol
SMG5
Alias
EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name
SMG5%2C nonsense mediated mRNA decay factor
Gene Type
protein_coding
Species
Ursus_maritimus
Status
putative
Strand
Plus strand
Length
22967 bases
Position
chrKK498627.1:688527-711493
Accession
24644
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSUMAP00000025077EST1PF10374.91.1e-2311
ENSUMAP00000025149EST1PF10374.91.1e-2311
ENSUMAP00000025120EST1PF10374.91.2e-2311
ENSUMAP00000025138EST1PF10374.91.2e-2311
ENSUMAP00000025138EST1_DNA_bindPF10373.99.8e-3212
ENSUMAP00000025138EST1_DNA_bindPF10373.99.8e-3222
ENSUMAP00000025149EST1_DNA_bindPF10373.91.1e-3112
ENSUMAP00000025149EST1_DNA_bindPF10373.91.1e-3122
ENSUMAP00000025120EST1_DNA_bindPF10373.92.3e-3112
ENSUMAP00000025120EST1_DNA_bindPF10373.92.3e-3122
ENSUMAP00000025077EST1_DNA_bindPF10373.91.9e-2912
ENSUMAP00000025077EST1_DNA_bindPF10373.91.9e-2922
ENSUMAP00000025149PIN_4PF13638.63.3e-0511
ENSUMAP00000025077PIN_4PF13638.63.3e-0511
ENSUMAP00000025120PIN_4PF13638.63.4e-0511
ENSUMAP00000025138PIN_4PF13638.63.5e-0511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSUMAT00000029688SMG5-2012907-ENSUMAP00000025077968 (aa)--
ENSUMAT00000029768SMG5-2042922-ENSUMAP00000025149973 (aa)--
ENSUMAT00000029738SMG5-2022940-ENSUMAP00000025120979 (aa)--
ENSUMAT00000029757SMG5-2032994-ENSUMAP00000025138997 (aa)--
Gene Model
Click here to download ENSUMAG00000018041's gene model file
Pathways
Pathway IDPathway NameSource
umr03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000018041's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSUMAG00000018041SMG59788.643ENSG00000198952SMG59889.146Homo_sapiens
ENSUMAG00000018041SMG59473.349ENSAPOG00000019690smg59174.083Acanthochromis_polyacanthus
ENSUMAG00000018041SMG59792.470ENSAMEG00000014458SMG510092.470Ailuropoda_melanoleuca
ENSUMAG00000018041SMG59959.981ENSACIG00000001353smg59961.176Amphilophus_citrinellus
ENSUMAG00000018041SMG59573.131ENSAOCG00000019483smg59174.815Amphiprion_ocellaris
ENSUMAG00000018041SMG59572.960ENSAPEG00000022949smg59174.568Amphiprion_percula
ENSUMAG00000018041SMG59873.697ENSATEG00000005348smg59274.272Anabas_testudineus
ENSUMAG00000018041SMG59872.949ENSAPLG00000010263SMG510073.638Anas_platyrhynchos
ENSUMAG00000018041SMG59987.289ENSANAG00000032899SMG510087.810Aotus_nancymaae
ENSUMAG00000018041SMG59572.494ENSACLG00000009311smg59174.815Astatotilapia_calliptera
ENSUMAG00000018041SMG59573.522ENSAMXG00000024616smg59957.790Astyanax_mexicanus
ENSUMAG00000018041SMG59788.141ENSBTAG00000009435SMG59889.347Bos_taurus
ENSUMAG00000018041SMG59942.685ENSBTAG00000021747-9942.415Bos_taurus
ENSUMAG00000018041SMG59986.753ENSCJAG00000005684SMG59889.246Callithrix_jacchus
ENSUMAG00000018041SMG59791.616ENSCAFG00000016839SMG59891.616Canis_familiaris
ENSUMAG00000018041SMG59791.616ENSCAFG00020006061SMG59891.616Canis_lupus_dingo
ENSUMAG00000018041SMG59789.146ENSCHIG00000007709SMG59889.045Capra_hircus
ENSUMAG00000018041SMG59943.273ENSCHIG00000006323-9943.333Capra_hircus
ENSUMAG00000018041SMG59788.554ENSTSYG00000004099SMG59888.554Carlito_syrichta
ENSUMAG00000018041SMG59866.091ENSCAPG00000003631SMG510067.983Cavia_aperea
ENSUMAG00000018041SMG59787.462ENSCPOG00000015696SMG59887.763Cavia_porcellus
ENSUMAG00000018041SMG59987.488ENSCCAG00000027409SMG510088.008Cebus_capucinus
ENSUMAG00000018041SMG59788.442ENSCATG00000030539SMG59889.045Cercocebus_atys
ENSUMAG00000018041SMG59788.064ENSCLAG00000003983SMG59888.566Chinchilla_lanigera
ENSUMAG00000018041SMG59788.342ENSCSAG00000002120SMG59888.945Chlorocebus_sabaeus
ENSUMAG00000018041SMG55684.588ENSCHOG00000008741-5784.838Choloepus_hoffmanni
ENSUMAG00000018041SMG59470.994ENSCPBG00000025848SMG510072.424Chrysemys_picta_bellii
ENSUMAG00000018041SMG59233.753ENSCING00000008706-9733.787Ciona_intestinalis
ENSUMAG00000018041SMG59790.560ENSCANG00000029208SMG59891.390Colobus_angolensis_palliatus
ENSUMAG00000018041SMG59785.442ENSCGRG00001006336Smg59885.040Cricetulus_griseus_chok1gshd
ENSUMAG00000018041SMG55246.857ENSCGRG00001000584-9646.239Cricetulus_griseus_chok1gshd
ENSUMAG00000018041SMG59885.300ENSCGRG00000005111Smg510085.025Cricetulus_griseus_crigri
ENSUMAG00000018041SMG59572.834ENSCSEG00000014220smg59174.752Cynoglossus_semilaevis
ENSUMAG00000018041SMG59955.976ENSCVAG00000000529smg59956.219Cyprinodon_variegatus
ENSUMAG00000018041SMG59775.669ENSDARG00000041481smg59868.455Danio_rerio
ENSUMAG00000018041SMG59335.900ENSDNOG00000039862-10035.027Dasypus_novemcinctus
ENSUMAG00000018041SMG59784.422ENSDNOG00000000051SMG59885.155Dasypus_novemcinctus
ENSUMAG00000018041SMG59786.273ENSDORG00000010382Smg59886.546Dipodomys_ordii
ENSUMAG00000018041SMG58397.087ENSETEG00000010336SMG59097.087Echinops_telfairi
ENSUMAG00000018041SMG59144.374ENSEBUG00000003739smg59944.920Eptatretus_burgeri
ENSUMAG00000018041SMG59789.447ENSEASG00005019122SMG59889.447Equus_asinus_asinus
ENSUMAG00000018041SMG59789.447ENSECAG00000001389SMG59889.447Equus_caballus
ENSUMAG00000018041SMG57493.429ENSEEUG00000012690SMG57493.660Erinaceus_europaeus
ENSUMAG00000018041SMG59961.243ENSELUG00000012585smg59176.617Esox_lucius
ENSUMAG00000018041SMG59791.726ENSFCAG00000011783SMG59891.726Felis_catus
ENSUMAG00000018041SMG56179.236ENSFALG00000001166-9979.333Ficedula_albicollis
ENSUMAG00000018041SMG59786.834ENSFDAG00000017388SMG510086.734Fukomys_damarensis
ENSUMAG00000018041SMG59571.149ENSFHEG00000013939smg59564.974Fundulus_heteroclitus
ENSUMAG00000018041SMG59570.814ENSGMOG00000007310smg59471.759Gadus_morhua
ENSUMAG00000018041SMG59971.126ENSGALG00000029918-9872.136Gallus_gallus
ENSUMAG00000018041SMG59572.979ENSGAFG00000021691smg59174.272Gambusia_affinis
ENSUMAG00000018041SMG59374.631ENSGACG00000013142smg59371.698Gasterosteus_aculeatus
ENSUMAG00000018041SMG59972.815ENSGAGG00000016131SMG59873.547Gopherus_agassizii
ENSUMAG00000018041SMG59788.342ENSGGOG00000010932SMG59889.045Gorilla_gorilla
ENSUMAG00000018041SMG59572.494ENSHBUG00000008654smg59174.815Haplochromis_burtoni
ENSUMAG00000018041SMG59984.394ENSHGLG00000019152SMG59886.760Heterocephalus_glaber_female
ENSUMAG00000018041SMG58785.746ENSHGLG00100015948SMG59786.399Heterocephalus_glaber_male
ENSUMAG00000018041SMG59858.716ENSHCOG00000010229smg59369.903Hippocampus_comes
ENSUMAG00000018041SMG59475.181ENSIPUG00000006624Smg59956.256Ictalurus_punctatus
ENSUMAG00000018041SMG59788.744ENSSTOG00000001780SMG59889.246Ictidomys_tridecemlineatus
ENSUMAG00000018041SMG59785.271ENSJJAG00000022763Smg59884.870Jaculus_jaculus
ENSUMAG00000018041SMG59572.979ENSKMAG00000014586smg59175.062Kryptolebias_marmoratus
ENSUMAG00000018041SMG59473.986ENSLBEG00000002145smg59175.000Labrus_bergylta
ENSUMAG00000018041SMG59760.531ENSLACG00000010521SMG59761.176Latimeria_chalumnae
ENSUMAG00000018041SMG59675.610ENSLOCG00000008380smg59076.559Lepisosteus_oculatus
ENSUMAG00000018041SMG59789.357ENSLAFG00000006241SMG59889.357Loxodonta_africana
ENSUMAG00000018041SMG59788.342ENSMFAG00000045357SMG59888.945Macaca_fascicularis
ENSUMAG00000018041SMG59788.342ENSMMUG00000000090SMG59888.945Macaca_mulatta
ENSUMAG00000018041SMG59788.241ENSMNEG00000044425SMG59888.844Macaca_nemestrina
ENSUMAG00000018041SMG59781.982ENSMLEG00000041192SMG59882.583Mandrillus_leucophaeus
ENSUMAG00000018041SMG59972.072ENSMAMG00000010683smg59672.135Mastacembelus_armatus
ENSUMAG00000018041SMG59959.223ENSMZEG00005015815smg59958.909Maylandia_zebra
ENSUMAG00000018041SMG56354.504ENSMZEG00005016543smg510054.351Maylandia_zebra
ENSUMAG00000018041SMG59784.438ENSMAUG00000010381Smg59884.036Mesocricetus_auratus
ENSUMAG00000018041SMG55543.838ENSMAUG00000000043-9645.355Mesocricetus_auratus
ENSUMAG00000018041SMG59986.779ENSMICG00000002257SMG59889.246Microcebus_murinus
ENSUMAG00000018041SMG59784.369ENSMOCG00000016590Smg59883.868Microtus_ochrogaster
ENSUMAG00000018041SMG59871.971ENSMMOG00000017199smg59955.435Mola_mola
ENSUMAG00000018041SMG59140.997ENSMODG00000004532-9538.275Monodelphis_domestica
ENSUMAG00000018041SMG59833.498ENSMODG00000004511-9933.905Monodelphis_domestica
ENSUMAG00000018041SMG59437.913ENSMODG00000004735-10038.032Monodelphis_domestica
ENSUMAG00000018041SMG58481.546ENSMODG00000016901SMG59682.814Monodelphis_domestica
ENSUMAG00000018041SMG58336.842ENSMODG00000010675-8937.203Monodelphis_domestica
ENSUMAG00000018041SMG59969.820ENSMALG00000010375smg59175.000Monopterus_albus
ENSUMAG00000018041SMG59785.341MGP_CAROLIEiJ_G0025163Smg510092.179Mus_caroli
ENSUMAG00000018041SMG59785.542ENSMUSG00000001415Smg59992.179Mus_musculus
ENSUMAG00000018041SMG59784.970MGP_PahariEiJ_G0026606Smg510092.179Mus_pahari
ENSUMAG00000018041SMG59785.442MGP_SPRETEiJ_G0026104Smg510092.179Mus_spretus
ENSUMAG00000018041SMG59390.295ENSMPUG00000004546SMG510090.295Mustela_putorius_furo
ENSUMAG00000018041SMG59985.686ENSMLUG00000008518SMG59887.663Myotis_lucifugus
ENSUMAG00000018041SMG59942.757ENSNGAG00000012101-9942.116Nannospalax_galili
ENSUMAG00000018041SMG59786.245ENSNGAG00000020706Smg59886.647Nannospalax_galili
ENSUMAG00000018041SMG58576.608ENSNBRG00000004332smg59858.593Neolamprologus_brichardi
ENSUMAG00000018041SMG59788.040ENSNLEG00000012439SMG59888.744Nomascus_leucogenys
ENSUMAG00000018041SMG59979.423ENSMEUG00000012834SMG59980.517Notamacropus_eugenii
ENSUMAG00000018041SMG59786.633ENSOPRG00000009152SMG59886.935Ochotona_princeps
ENSUMAG00000018041SMG59985.884ENSODEG00000012237SMG59888.442Octodon_degus
ENSUMAG00000018041SMG59572.727ENSONIG00000008632smg59175.062Oreochromis_niloticus
ENSUMAG00000018041SMG58939.659ENSOCUG00000023338-9739.612Oryctolagus_cuniculus
ENSUMAG00000018041SMG59787.940ENSOCUG00000012886SMG510088.543Oryctolagus_cuniculus
ENSUMAG00000018041SMG59770.470ENSORLG00000016239smg59273.671Oryzias_latipes
ENSUMAG00000018041SMG59572.517ENSORLG00020013127smg59960.831Oryzias_latipes_hni
ENSUMAG00000018041SMG59572.517ENSORLG00015019014smg59961.341Oryzias_latipes_hsok
ENSUMAG00000018041SMG57674.645ENSOMEG00000021330smg58474.453Oryzias_melastigma
ENSUMAG00000018041SMG59788.342ENSOGAG00000004966SMG59888.945Otolemur_garnettii
ENSUMAG00000018041SMG59942.900ENSOARG00000011963-9842.800Ovis_aries
ENSUMAG00000018041SMG59789.246ENSOARG00000005778SMG59889.146Ovis_aries
ENSUMAG00000018041SMG59788.342ENSPPAG00000011996SMG59889.045Pan_paniscus
ENSUMAG00000018041SMG59791.717ENSPPRG00000011901SMG510091.717Panthera_pardus
ENSUMAG00000018041SMG59883.828ENSPTIG00000007892SMG59784.776Panthera_tigris_altaica
ENSUMAG00000018041SMG59788.442ENSPTRG00000049282-9889.146Pan_troglodytes
ENSUMAG00000018041SMG59788.442ENSPTRG00000023925SMG59889.146Pan_troglodytes
ENSUMAG00000018041SMG59788.442ENSPANG00000011201SMG59889.045Papio_anubis
ENSUMAG00000018041SMG59872.158ENSPKIG00000009402smg59275.062Paramormyrops_kingsleyae
ENSUMAG00000018041SMG59874.008ENSPSIG00000015198SMG510074.752Pelodiscus_sinensis
ENSUMAG00000018041SMG59856.367ENSPMGG00000010465smg59856.367Periophthalmus_magnuspinnatus
ENSUMAG00000018041SMG59785.141ENSPEMG00000001819Smg59884.739Peromyscus_maniculatus_bairdii
ENSUMAG00000018041SMG55744.602ENSPEMG00000010022-9445.537Peromyscus_maniculatus_bairdii
ENSUMAG00000018041SMG59754.709ENSPMAG00000000410smg59849.365Petromyzon_marinus
ENSUMAG00000018041SMG59782.046ENSPCIG00000018938SMG59883.049Phascolarctos_cinereus
ENSUMAG00000018041SMG59573.210ENSPFOG00000010191smg59274.515Poecilia_formosa
ENSUMAG00000018041SMG59573.210ENSPLAG00000009332smg59274.515Poecilia_latipinna
ENSUMAG00000018041SMG59573.210ENSPMEG00000014105smg59274.515Poecilia_mexicana
ENSUMAG00000018041SMG59573.210ENSPREG00000017713smg59274.515Poecilia_reticulata
ENSUMAG00000018041SMG59788.643ENSPPYG00000000723SMG59889.347Pongo_abelii
ENSUMAG00000018041SMG56796.899ENSPCAG00000008412SMG57097.656Procavia_capensis
ENSUMAG00000018041SMG59986.680ENSPCOG00000004741SMG59889.146Propithecus_coquereli
ENSUMAG00000018041SMG59780.000ENSPVAG00000016748SMG59880.000Pteropus_vampyrus
ENSUMAG00000018041SMG59572.261ENSPNYG00000013397smg59174.568Pundamilia_nyererei
ENSUMAG00000018041SMG59675.181ENSPNAG00000028363smg59275.430Pygocentrus_nattereri
ENSUMAG00000018041SMG59785.944ENSRNOG00000019590Smg59885.341Rattus_norvegicus
ENSUMAG00000018041SMG59788.442ENSRBIG00000027428SMG59889.045Rhinopithecus_bieti
ENSUMAG00000018041SMG59788.342ENSRROG00000030035SMG59888.945Rhinopithecus_roxellana
ENSUMAG00000018041SMG59788.442ENSSBOG00000033339SMG59889.146Saimiri_boliviensis_boliviensis
ENSUMAG00000018041SMG59781.637ENSSHAG00000014163SMG510082.735Sarcophilus_harrisii
ENSUMAG00000018041SMG59833.436ENSSHAG00000009572-9633.231Sarcophilus_harrisii
ENSUMAG00000018041SMG56140.984ENSSHAG00000000935-8442.609Sarcophilus_harrisii
ENSUMAG00000018041SMG58638.259ENSSHAG00000000561-9336.979Sarcophilus_harrisii
ENSUMAG00000018041SMG59874.217ENSSFOG00015024175smg59274.447Scleropages_formosus
ENSUMAG00000018041SMG59572.494ENSSMAG00000013059smg59174.568Scophthalmus_maximus
ENSUMAG00000018041SMG59473.176ENSSDUG00000007122smg59174.083Seriola_dumerili
ENSUMAG00000018041SMG59473.397ENSSLDG00000011418smg59572.922Seriola_lalandi_dorsalis
ENSUMAG00000018041SMG58775.531ENSSARG00000012484SMG59972.976Sorex_araneus
ENSUMAG00000018041SMG59371.903ENSSPUG00000002260SMG510071.400Sphenodon_punctatus
ENSUMAG00000018041SMG59770.536ENSSPAG00000014266smg59273.253Stegastes_partitus
ENSUMAG00000018041SMG55436.245ENSSSCG00000037182-8238.552Sus_scrofa
ENSUMAG00000018041SMG59793.179ENSSSCG00000006490-9893.179Sus_scrofa
ENSUMAG00000018041SMG59967.435ENSSSCG00000039308-9967.936Sus_scrofa
ENSUMAG00000018041SMG59973.788ENSTGUG00000003748-9874.950Taeniopygia_guttata
ENSUMAG00000018041SMG59770.670ENSTRUG00000012580smg59172.749Takifugu_rubripes
ENSUMAG00000018041SMG59569.406ENSTNIG00000010303smg59669.178Tetraodon_nigroviridis
ENSUMAG00000018041SMG55993.204ENSTBEG00000002777SMG55793.659Tupaia_belangeri
ENSUMAG00000018041SMG59487.409ENSTTRG00000001401SMG59487.409Tursiops_truncatus
ENSUMAG00000018041SMG59794.147ENSUAMG00000013721SMG59894.147Ursus_americanus
ENSUMAG00000018041SMG59595.050ENSVPAG00000009446SMG59595.050Vicugna_pacos
ENSUMAG00000018041SMG59791.616ENSVVUG00000005887SMG59891.616Vulpes_vulpes
ENSUMAG00000018041SMG57761.412ENSXETG00000033791SMG59961.034Xenopus_tropicalis
ENSUMAG00000018041SMG57768.649ENSXCOG00000004379smg59074.029Xiphophorus_couchianus
ENSUMAG00000018041SMG59572.517ENSXMAG00000013499smg59273.786Xiphophorus_maculatus

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