EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSUMAG00000018971 (Gene tree)
Gene ID: 103659340
Gene Symbol: CSTF3
Alias: CstF-77
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 53239 bases
Position: chrKK498561.1:3657727-3710965
Accession: 2485
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000026623	Suf	PF05843.14	1.6e-83	1	1
ENSUMAP00000026563	Suf	PF05843.14	1.2e-82	1	1
ENSUMAP00000026655	Suf	PF05843.14	8.7e-75	1	1
ENSUMAP00000026666	Suf	PF05843.14	1.4e-71	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000031563	CSTF3-204	1752	-	ENSUMAP00000026666	583 (aa)	-	-
ENSUMAT00000031440	CSTF3-201	2824	-	ENSUMAP00000026563	625 (aa)	-	-
ENSUMAT00000031516	CSTF3-202	2160	-	ENSUMAP00000026623	719 (aa)	-	-
ENSUMAT00000031550	CSTF3-203	2055	-	ENSUMAP00000026655	684 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000018971's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000018971's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000018971	CSTF3	100	99.680	ENSG00000176102	CSTF3	99	99.718	Homo_sapiens
ENSUMAG00000018971	CSTF3	100	91.040	ENSAPOG00000014054	cstf3	99	91.667	Acanthochromis_polyacanthus
ENSUMAG00000018971	CSTF3	100	99.840	ENSAMEG00000007187	CSTF3	99	99.722	Ailuropoda_melanoleuca
ENSUMAG00000018971	CSTF3	100	85.760	ENSACIG00000005539	cstf3	100	85.760	Amphilophus_citrinellus
ENSUMAG00000018971	CSTF3	100	90.720	ENSAOCG00000010930	cstf3	99	91.384	Amphiprion_ocellaris
ENSUMAG00000018971	CSTF3	100	90.720	ENSAPEG00000007903	cstf3	99	91.384	Amphiprion_percula
ENSUMAG00000018971	CSTF3	100	91.040	ENSATEG00000000190	cstf3	99	91.667	Anabas_testudineus
ENSUMAG00000018971	CSTF3	100	97.760	ENSAPLG00000007217	CSTF3	100	98.023	Anas_platyrhynchos
ENSUMAG00000018971	CSTF3	100	95.520	ENSACAG00000002823	CSTF3	99	96.051	Anolis_carolinensis
ENSUMAG00000018971	CSTF3	100	99.680	ENSANAG00000020699	CSTF3	100	99.680	Aotus_nancymaae
ENSUMAG00000018971	CSTF3	100	90.720	ENSACLG00000007820	cstf3	99	91.525	Astatotilapia_calliptera
ENSUMAG00000018971	CSTF3	100	92.000	ENSAMXG00000014198	cstf3	99	91.268	Astyanax_mexicanus
ENSUMAG00000018971	CSTF3	100	99.680	ENSBTAG00000008617	CSTF3	100	99.703	Bos_taurus
ENSUMAG00000018971	CSTF3	99	48.702	WBGene00006307	suf-1	99	49.452	Caenorhabditis_elegans
ENSUMAG00000018971	CSTF3	100	99.680	ENSCJAG00000005533	CSTF3	100	99.680	Callithrix_jacchus
ENSUMAG00000018971	CSTF3	100	99.680	ENSCAFG00000007264	CSTF3	99	99.718	Canis_familiaris
ENSUMAG00000018971	CSTF3	100	99.680	ENSCAFG00020002715	CSTF3	100	99.583	Canis_lupus_dingo
ENSUMAG00000018971	CSTF3	100	99.680	ENSCHIG00000016418	CSTF3	100	99.680	Capra_hircus
ENSUMAG00000018971	CSTF3	100	99.200	ENSTSYG00000000451	CSTF3	100	99.295	Carlito_syrichta
ENSUMAG00000018971	CSTF3	90	96.023	ENSCAPG00000010958	CSTF3	99	96.023	Cavia_aperea
ENSUMAG00000018971	CSTF3	100	99.360	ENSCPOG00000005545	CSTF3	99	99.436	Cavia_porcellus
ENSUMAG00000018971	CSTF3	100	99.680	ENSCCAG00000024790	CSTF3	100	99.680	Cebus_capucinus
ENSUMAG00000018971	CSTF3	100	99.680	ENSCATG00000007080	CSTF3	100	99.680	Cercocebus_atys
ENSUMAG00000018971	CSTF3	100	99.680	ENSCLAG00000016179	CSTF3	99	99.718	Chinchilla_lanigera
ENSUMAG00000018971	CSTF3	78	100.000	ENSCHOG00000002497	CSTF3	79	100.000	Choloepus_hoffmanni
ENSUMAG00000018971	CSTF3	100	97.600	ENSCPBG00000006753	CSTF3	99	97.884	Chrysemys_picta_bellii
ENSUMAG00000018971	CSTF3	100	62.085	ENSCING00000006401	-	98	61.958	Ciona_intestinalis
ENSUMAG00000018971	CSTF3	100	61.478	ENSCSAVG00000004851	-	100	61.646	Ciona_savignyi
ENSUMAG00000018971	CSTF3	100	99.680	ENSCANG00000035468	CSTF3	100	99.680	Colobus_angolensis_palliatus
ENSUMAG00000018971	CSTF3	100	99.200	ENSCGRG00001014773	Cstf3	99	99.295	Cricetulus_griseus_chok1gshd
ENSUMAG00000018971	CSTF3	100	99.200	ENSCGRG00000004142	Cstf3	99	99.295	Cricetulus_griseus_crigri
ENSUMAG00000018971	CSTF3	100	90.720	ENSCSEG00000014283	cstf3	99	91.396	Cynoglossus_semilaevis
ENSUMAG00000018971	CSTF3	100	89.920	ENSCVAG00000019739	cstf3	99	90.537	Cyprinodon_variegatus
ENSUMAG00000018971	CSTF3	100	90.400	ENSDARG00000018904	cstf3	99	91.396	Danio_rerio
ENSUMAG00000018971	CSTF3	100	99.200	ENSDNOG00000007366	CSTF3	99	99.017	Dasypus_novemcinctus
ENSUMAG00000018971	CSTF3	100	92.480	ENSDORG00000005898	Cstf3	99	91.819	Dipodomys_ordii
ENSUMAG00000018971	CSTF3	93	64.641	FBgn0003559	su(f)	98	57.418	Drosophila_melanogaster
ENSUMAG00000018971	CSTF3	96	98.997	ENSETEG00000017097	CSTF3	90	93.925	Echinops_telfairi
ENSUMAG00000018971	CSTF3	90	77.629	ENSEBUG00000015459	cstf3	96	74.050	Eptatretus_burgeri
ENSUMAG00000018971	CSTF3	100	99.520	ENSEASG00005019884	CSTF3	100	99.571	Equus_asinus_asinus
ENSUMAG00000018971	CSTF3	100	99.520	ENSECAG00000023338	CSTF3	100	99.571	Equus_caballus
ENSUMAG00000018971	CSTF3	100	93.440	ENSEEUG00000015167	CSTF3	99	94.217	Erinaceus_europaeus
ENSUMAG00000018971	CSTF3	99	90.127	ENSELUG00000023393	cstf3	99	90.127	Esox_lucius
ENSUMAG00000018971	CSTF3	100	99.520	ENSFCAG00000030711	CSTF3	99	99.577	Felis_catus
ENSUMAG00000018971	CSTF3	100	97.600	ENSFALG00000010764	CSTF3	100	96.928	Ficedula_albicollis
ENSUMAG00000018971	CSTF3	100	99.520	ENSFDAG00000012082	CSTF3	99	99.577	Fukomys_damarensis
ENSUMAG00000018971	CSTF3	100	90.080	ENSFHEG00000020623	cstf3	99	90.678	Fundulus_heteroclitus
ENSUMAG00000018971	CSTF3	100	89.137	ENSGMOG00000012275	cstf3	99	89.704	Gadus_morhua
ENSUMAG00000018971	CSTF3	100	98.240	ENSGALG00000011685	CSTF3	99	98.449	Gallus_gallus
ENSUMAG00000018971	CSTF3	100	90.400	ENSGAFG00000002181	cstf3	99	90.960	Gambusia_affinis
ENSUMAG00000018971	CSTF3	100	90.240	ENSGACG00000015997	cstf3	99	90.960	Gasterosteus_aculeatus
ENSUMAG00000018971	CSTF3	100	97.600	ENSGAGG00000006200	CSTF3	99	97.884	Gopherus_agassizii
ENSUMAG00000018971	CSTF3	100	94.720	ENSGGOG00000026591	CSTF3	99	93.812	Gorilla_gorilla
ENSUMAG00000018971	CSTF3	100	90.720	ENSHBUG00000016656	cstf3	99	91.525	Haplochromis_burtoni
ENSUMAG00000018971	CSTF3	100	99.360	ENSHGLG00000017834	CSTF3	99	99.436	Heterocephalus_glaber_female
ENSUMAG00000018971	CSTF3	100	99.360	ENSHGLG00100018042	CSTF3	100	99.158	Heterocephalus_glaber_male
ENSUMAG00000018971	CSTF3	100	89.760	ENSHCOG00000015218	cstf3	99	89.124	Hippocampus_comes
ENSUMAG00000018971	CSTF3	100	90.240	ENSIPUG00000013170	CSTF3	99	90.550	Ictalurus_punctatus
ENSUMAG00000018971	CSTF3	100	99.680	ENSSTOG00000013306	CSTF3	99	99.718	Ictidomys_tridecemlineatus
ENSUMAG00000018971	CSTF3	99	87.413	ENSJJAG00000018430	Cstf3	99	87.413	Jaculus_jaculus
ENSUMAG00000018971	CSTF3	100	90.080	ENSKMAG00000010916	cstf3	99	90.678	Kryptolebias_marmoratus
ENSUMAG00000018971	CSTF3	100	89.760	ENSLBEG00000002306	cstf3	99	90.537	Labrus_bergylta
ENSUMAG00000018971	CSTF3	100	93.920	ENSLACG00000017296	CSTF3	99	94.358	Latimeria_chalumnae
ENSUMAG00000018971	CSTF3	100	93.120	ENSLOCG00000004415	cstf3	99	93.653	Lepisosteus_oculatus
ENSUMAG00000018971	CSTF3	100	99.360	ENSLAFG00000008712	CSTF3	99	99.436	Loxodonta_africana
ENSUMAG00000018971	CSTF3	100	99.680	ENSMFAG00000029516	CSTF3	100	99.680	Macaca_fascicularis
ENSUMAG00000018971	CSTF3	100	99.680	ENSMMUG00000002542	CSTF3	99	99.718	Macaca_mulatta
ENSUMAG00000018971	CSTF3	100	99.680	ENSMNEG00000021807	CSTF3	100	99.680	Macaca_nemestrina
ENSUMAG00000018971	CSTF3	100	99.680	ENSMLEG00000039594	CSTF3	100	99.680	Mandrillus_leucophaeus
ENSUMAG00000018971	CSTF3	100	90.720	ENSMAMG00000020423	cstf3	99	91.384	Mastacembelus_armatus
ENSUMAG00000018971	CSTF3	100	90.720	ENSMZEG00005012082	cstf3	99	91.525	Maylandia_zebra
ENSUMAG00000018971	CSTF3	100	98.240	ENSMGAG00000001383	CSTF3	99	98.449	Meleagris_gallopavo
ENSUMAG00000018971	CSTF3	100	99.040	ENSMAUG00000002487	Cstf3	99	99.154	Mesocricetus_auratus
ENSUMAG00000018971	CSTF3	100	99.680	ENSMICG00000004784	CSTF3	100	99.680	Microcebus_murinus
ENSUMAG00000018971	CSTF3	100	99.200	ENSMOCG00000017583	Cstf3	99	99.295	Microtus_ochrogaster
ENSUMAG00000018971	CSTF3	100	90.400	ENSMMOG00000016026	cstf3	94	91.102	Mola_mola
ENSUMAG00000018971	CSTF3	100	84.320	ENSMODG00000025205	-	99	84.441	Monodelphis_domestica
ENSUMAG00000018971	CSTF3	100	98.400	ENSMODG00000009745	-	99	98.590	Monodelphis_domestica
ENSUMAG00000018971	CSTF3	100	90.400	ENSMALG00000012050	cstf3	99	91.102	Monopterus_albus
ENSUMAG00000018971	CSTF3	100	99.200	MGP_CAROLIEiJ_G0024026	Cstf3	99	99.295	Mus_caroli
ENSUMAG00000018971	CSTF3	100	99.200	ENSMUSG00000027176	Cstf3	99	99.295	Mus_musculus
ENSUMAG00000018971	CSTF3	100	99.200	MGP_PahariEiJ_G0025464	Cstf3	99	99.295	Mus_pahari
ENSUMAG00000018971	CSTF3	100	99.200	MGP_SPRETEiJ_G0024939	Cstf3	99	99.295	Mus_spretus
ENSUMAG00000018971	CSTF3	100	99.840	ENSMPUG00000011457	CSTF3	99	99.859	Mustela_putorius_furo
ENSUMAG00000018971	CSTF3	100	99.680	ENSMLUG00000003073	-	99	99.024	Myotis_lucifugus
ENSUMAG00000018971	CSTF3	100	96.480	ENSMLUG00000026022	-	99	96.208	Myotis_lucifugus
ENSUMAG00000018971	CSTF3	100	99.200	ENSNGAG00000010677	Cstf3	99	99.295	Nannospalax_galili
ENSUMAG00000018971	CSTF3	100	90.720	ENSNBRG00000007345	cstf3	100	90.720	Neolamprologus_brichardi
ENSUMAG00000018971	CSTF3	100	99.680	ENSNLEG00000017901	CSTF3	100	99.680	Nomascus_leucogenys
ENSUMAG00000018971	CSTF3	81	94.664	ENSMEUG00000005640	-	100	94.837	Notamacropus_eugenii
ENSUMAG00000018971	CSTF3	66	100.000	ENSOPRG00000000199	-	66	100.000	Ochotona_princeps
ENSUMAG00000018971	CSTF3	99	88.871	ENSODEG00000006311	-	97	87.107	Octodon_degus
ENSUMAG00000018971	CSTF3	100	99.520	ENSODEG00000016737	-	99	99.577	Octodon_degus
ENSUMAG00000018971	CSTF3	100	90.720	ENSONIG00000005563	cstf3	99	91.525	Oreochromis_niloticus
ENSUMAG00000018971	CSTF3	100	97.448	ENSOANG00000015140	CSTF3	100	96.769	Ornithorhynchus_anatinus
ENSUMAG00000018971	CSTF3	100	99.680	ENSOCUG00000015417	CSTF3	99	99.718	Oryctolagus_cuniculus
ENSUMAG00000018971	CSTF3	100	90.560	ENSORLG00000009762	cstf3	99	90.973	Oryzias_latipes
ENSUMAG00000018971	CSTF3	100	90.560	ENSORLG00020005540	cstf3	99	90.973	Oryzias_latipes_hni
ENSUMAG00000018971	CSTF3	100	90.400	ENSORLG00015003551	cstf3	99	90.832	Oryzias_latipes_hsok
ENSUMAG00000018971	CSTF3	100	89.920	ENSOMEG00000003848	cstf3	99	90.665	Oryzias_melastigma
ENSUMAG00000018971	CSTF3	100	99.363	ENSOGAG00000010229	CSTF3	99	99.438	Otolemur_garnettii
ENSUMAG00000018971	CSTF3	100	99.680	ENSOARG00000017271	CSTF3	99	99.533	Ovis_aries
ENSUMAG00000018971	CSTF3	100	97.280	ENSPPAG00000027358	CSTF3	99	96.062	Pan_paniscus
ENSUMAG00000018971	CSTF3	100	99.520	ENSPPRG00000016852	CSTF3	99	99.577	Panthera_pardus
ENSUMAG00000018971	CSTF3	100	99.520	ENSPTIG00000008716	CSTF3	99	99.577	Panthera_tigris_altaica
ENSUMAG00000018971	CSTF3	100	99.680	ENSPTRG00000003485	CSTF3	99	99.718	Pan_troglodytes
ENSUMAG00000018971	CSTF3	100	99.680	ENSPANG00000013722	CSTF3	99	99.718	Papio_anubis
ENSUMAG00000018971	CSTF3	100	91.840	ENSPKIG00000023648	cstf3	99	92.416	Paramormyrops_kingsleyae
ENSUMAG00000018971	CSTF3	100	97.120	ENSPSIG00000009173	CSTF3	99	97.461	Pelodiscus_sinensis
ENSUMAG00000018971	CSTF3	93	95.556	ENSPMGG00000000164	cstf3	99	95.556	Periophthalmus_magnuspinnatus
ENSUMAG00000018971	CSTF3	100	99.040	ENSPEMG00000011481	Cstf3	99	99.154	Peromyscus_maniculatus_bairdii
ENSUMAG00000018971	CSTF3	100	80.763	ENSPMAG00000007282	cstf3	99	79.606	Petromyzon_marinus
ENSUMAG00000018971	CSTF3	100	97.920	ENSPCIG00000026406	-	100	97.920	Phascolarctos_cinereus
ENSUMAG00000018971	CSTF3	100	81.310	ENSPCIG00000030419	-	89	81.831	Phascolarctos_cinereus
ENSUMAG00000018971	CSTF3	100	90.560	ENSPFOG00000017239	cstf3	99	91.102	Poecilia_formosa
ENSUMAG00000018971	CSTF3	100	90.560	ENSPLAG00000009456	cstf3	99	91.102	Poecilia_latipinna
ENSUMAG00000018971	CSTF3	100	90.560	ENSPMEG00000010320	cstf3	99	91.102	Poecilia_mexicana
ENSUMAG00000018971	CSTF3	100	90.560	ENSPREG00000013549	cstf3	99	91.102	Poecilia_reticulata
ENSUMAG00000018971	CSTF3	100	99.680	ENSPPYG00000003375	CSTF3	99	99.718	Pongo_abelii
ENSUMAG00000018971	CSTF3	70	99.652	ENSPCAG00000008025	-	70	99.652	Procavia_capensis
ENSUMAG00000018971	CSTF3	100	95.520	ENSPCOG00000014417	CSTF3	99	94.499	Propithecus_coquereli
ENSUMAG00000018971	CSTF3	100	95.200	ENSPVAG00000002350	CSTF3	99	94.217	Pteropus_vampyrus
ENSUMAG00000018971	CSTF3	100	90.720	ENSPNYG00000018259	cstf3	99	91.525	Pundamilia_nyererei
ENSUMAG00000018971	CSTF3	100	91.520	ENSPNAG00000020182	cstf3	99	92.384	Pygocentrus_nattereri
ENSUMAG00000018971	CSTF3	100	98.880	ENSRNOG00000012089	Cstf3	100	98.880	Rattus_norvegicus
ENSUMAG00000018971	CSTF3	100	99.680	ENSRBIG00000044258	CSTF3	100	99.680	Rhinopithecus_bieti
ENSUMAG00000018971	CSTF3	100	99.680	ENSRROG00000043450	CSTF3	100	99.680	Rhinopithecus_roxellana
ENSUMAG00000018971	CSTF3	100	99.680	ENSSBOG00000024764	CSTF3	100	99.680	Saimiri_boliviensis_boliviensis
ENSUMAG00000018971	CSTF3	100	98.240	ENSSHAG00000018128	-	99	98.034	Sarcophilus_harrisii
ENSUMAG00000018971	CSTF3	100	85.440	ENSSHAG00000003135	-	98	85.856	Sarcophilus_harrisii
ENSUMAG00000018971	CSTF3	100	91.680	ENSSFOG00015022133	cstf3	99	92.525	Scleropages_formosus
ENSUMAG00000018971	CSTF3	100	90.080	ENSSMAG00000002197	cstf3	99	90.678	Scophthalmus_maximus
ENSUMAG00000018971	CSTF3	100	90.880	ENSSDUG00000020426	cstf3	99	91.525	Seriola_dumerili
ENSUMAG00000018971	CSTF3	100	90.880	ENSSLDG00000025649	cstf3	99	91.525	Seriola_lalandi_dorsalis
ENSUMAG00000018971	CSTF3	100	99.680	ENSSARG00000000391	CSTF3	99	99.577	Sorex_araneus
ENSUMAG00000018971	CSTF3	100	96.800	ENSSPUG00000010546	CSTF3	100	97.106	Sphenodon_punctatus
ENSUMAG00000018971	CSTF3	100	90.880	ENSSPAG00000004958	cstf3	99	91.525	Stegastes_partitus
ENSUMAG00000018971	CSTF3	100	99.520	ENSSSCG00000040954	CSTF3	99	99.298	Sus_scrofa
ENSUMAG00000018971	CSTF3	100	97.600	ENSTGUG00000005010	CSTF3	100	97.740	Taeniopygia_guttata
ENSUMAG00000018971	CSTF3	100	89.600	ENSTRUG00000004959	cstf3	99	90.254	Takifugu_rubripes
ENSUMAG00000018971	CSTF3	100	90.080	ENSTNIG00000013811	cstf3	98	90.678	Tetraodon_nigroviridis
ENSUMAG00000018971	CSTF3	100	96.000	ENSTBEG00000001544	CSTF3	90	96.106	Tupaia_belangeri
ENSUMAG00000018971	CSTF3	100	96.640	ENSTTRG00000016366	CSTF3	99	97.038	Tursiops_truncatus
ENSUMAG00000018971	CSTF3	100	99.520	ENSVPAG00000007800	CSTF3	99	99.577	Vicugna_pacos
ENSUMAG00000018971	CSTF3	100	99.680	ENSVVUG00000014938	CSTF3	100	99.680	Vulpes_vulpes
ENSUMAG00000018971	CSTF3	97	80.650	ENSXETG00000021399	cstf3	100	80.744	Xenopus_tropicalis
ENSUMAG00000018971	CSTF3	81	43.478	ENSXETG00000017946	-	99	43.478	Xenopus_tropicalis
ENSUMAG00000018971	CSTF3	100	90.080	ENSXCOG00000011741	cstf3	100	90.080	Xiphophorus_couchianus
ENSUMAG00000018971	CSTF3	100	90.560	ENSXMAG00000009545	cstf3	99	91.102	Xiphophorus_maculatus