EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000023270 (Gene tree)
Gene ID: 103672568
Gene Symbol: RAB5C
Alias: -
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 22268 bases
Position: chrKK498661.1:687939-710206
Accession: 103672568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000032295	MMR_HSR1	PF01926.23	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000038180	RAB5C-202	1437	-	ENSUMAP00000032296	324 (aa)	-	-
ENSUMAT00000038179	RAB5C-201	1387	XM_008701284	ENSUMAP00000032295	216 (aa)	XP_008699506	UPI0001C0E7B0

Gene Model

Click here to download ENSUMAG00000023270's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr04014	Ras signaling pathway	KEGG
umr04144	Endocytosis	KEGG
umr04145	Phagosome	KEGG
umr04962	Vasopressin-regulated water reabsorption	KEGG
umr05146	Amoebiasis	KEGG
umr05152	Tuberculosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000023270's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000023270	RAB5C	80	35.838	ENSUMAG00000018629	RAB23	73	35.838
ENSUMAG00000023270	RAB5C	90	42.995	ENSUMAG00000012273	RAB11A	94	42.995
ENSUMAG00000023270	RAB5C	75	31.902	ENSUMAG00000011722	NRAS	85	31.902
ENSUMAG00000023270	RAB5C	63	48.175	ENSUMAG00000014594	RAB11B	67	48.175
ENSUMAG00000023270	RAB5C	89	33.838	ENSUMAG00000019370	-	97	33.838
ENSUMAG00000023270	RAB5C	77	32.335	ENSUMAG00000005506	-	87	34.667
ENSUMAG00000023270	RAB5C	89	33.838	ENSUMAG00000005348	-	97	33.838
ENSUMAG00000023270	RAB5C	73	35.000	ENSUMAG00000000492	RAB36	54	35.000
ENSUMAG00000023270	RAB5C	89	34.343	ENSUMAG00000001213	RAB9B	97	34.343
ENSUMAG00000023270	RAB5C	75	36.585	ENSUMAG00000017386	RAB39B	77	36.585
ENSUMAG00000023270	RAB5C	71	36.601	ENSUMAG00000017116	-	67	36.601
ENSUMAG00000023270	RAB5C	93	38.164	ENSUMAG00000014975	RAB33B	90	38.164
ENSUMAG00000023270	RAB5C	97	85.646	ENSUMAG00000016263	RAB5B	97	85.646
ENSUMAG00000023270	RAB5C	76	42.683	ENSUMAG00000003596	RAB14	76	42.683
ENSUMAG00000023270	RAB5C	77	42.442	ENSUMAG00000015081	RAB7A	88	43.293
ENSUMAG00000023270	RAB5C	62	30.935	ENSUMAG00000007345	ARF6	85	30.935
ENSUMAG00000023270	RAB5C	55	31.967	ENSUMAG00000019574	ARL8B	62	31.967
ENSUMAG00000023270	RAB5C	100	87.500	ENSUMAG00000018295	RAB5A	100	87.500
ENSUMAG00000023270	RAB5C	78	32.948	ENSUMAG00000002671	RERG	85	32.948
ENSUMAG00000023270	RAB5C	94	38.835	ENSUMAG00000010248	RAB6A	98	38.835
ENSUMAG00000023270	RAB5C	89	44.330	ENSUMAG00000011180	RAB1B	87	44.330
ENSUMAG00000023270	RAB5C	78	42.012	ENSUMAG00000023572	RAB30	83	42.012
ENSUMAG00000023270	RAB5C	84	41.436	ENSUMAG00000004940	RAB2B	84	41.436
ENSUMAG00000023270	RAB5C	85	41.081	ENSUMAG00000015574	-	92	40.415
ENSUMAG00000023270	RAB5C	73	30.675	ENSUMAG00000022558	DNAJC27	60	30.675
ENSUMAG00000023270	RAB5C	75	39.759	ENSUMAG00000011821	RAB33A	71	39.759
ENSUMAG00000023270	RAB5C	89	42.289	ENSUMAG00000018376	RAB25	93	42.289
ENSUMAG00000023270	RAB5C	89	43.077	ENSUMAG00000021038	RAB1A	97	43.077
ENSUMAG00000023270	RAB5C	77	32.934	ENSUMAG00000003274	KRAS	95	30.387

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000023270	RAB5C	100	99.074	ENSG00000108774	RAB5C	100	100.000	Homo_sapiens
ENSUMAG00000023270	RAB5C	99	89.302	ENSAPOG00000016864	rab5c	98	91.163	Acanthochromis_polyacanthus
ENSUMAG00000023270	RAB5C	100	100.000	ENSAMEG00000006003	RAB5C	100	100.000	Ailuropoda_melanoleuca
ENSUMAG00000023270	RAB5C	99	88.889	ENSACIG00000010896	rab5c	98	90.278	Amphilophus_citrinellus
ENSUMAG00000023270	RAB5C	99	89.352	ENSAOCG00000016614	rab5c	98	91.204	Amphiprion_ocellaris
ENSUMAG00000023270	RAB5C	97	89.100	ENSAPEG00000017868	-	97	90.995	Amphiprion_percula
ENSUMAG00000023270	RAB5C	100	89.908	ENSATEG00000001937	rab5c	100	90.826	Anabas_testudineus
ENSUMAG00000023270	RAB5C	94	99.020	ENSANAG00000025390	RAB5C	100	99.020	Aotus_nancymaae
ENSUMAG00000023270	RAB5C	96	89.100	ENSACLG00000008615	-	99	88.584	Astatotilapia_calliptera
ENSUMAG00000023270	RAB5C	99	87.963	ENSACLG00000002706	rab5c	98	90.278	Astatotilapia_calliptera
ENSUMAG00000023270	RAB5C	99	89.862	ENSAMXG00000043717	rab5c	99	90.826	Astyanax_mexicanus
ENSUMAG00000023270	RAB5C	96	88.571	ENSAMXG00000037267	-	99	90.476	Astyanax_mexicanus
ENSUMAG00000023270	RAB5C	100	99.074	ENSBTAG00000006982	RAB5C	100	99.074	Bos_taurus
ENSUMAG00000023270	RAB5C	99	75.814	WBGene00004268	rab-5	99	75.814	Caenorhabditis_elegans
ENSUMAG00000023270	RAB5C	100	99.537	ENSCAFG00000015629	RAB5C	100	99.537	Canis_familiaris
ENSUMAG00000023270	RAB5C	100	99.537	ENSCAFG00020013537	RAB5C	100	99.537	Canis_lupus_dingo
ENSUMAG00000023270	RAB5C	100	99.074	ENSCHIG00000012960	RAB5C	100	99.074	Capra_hircus
ENSUMAG00000023270	RAB5C	100	99.537	ENSTSYG00000030531	RAB5C	100	99.537	Carlito_syrichta
ENSUMAG00000023270	RAB5C	100	98.611	ENSCCAG00000025940	RAB5C	100	98.611	Cebus_capucinus
ENSUMAG00000023270	RAB5C	100	99.074	ENSCATG00000040873	RAB5C	100	99.074	Cercocebus_atys
ENSUMAG00000023270	RAB5C	100	97.222	ENSCLAG00000016650	RAB5C	100	97.222	Chinchilla_lanigera
ENSUMAG00000023270	RAB5C	82	99.438	ENSCHOG00000009886	RAB5C	100	99.438	Choloepus_hoffmanni
ENSUMAG00000023270	RAB5C	99	77.103	ENSCING00000003340	-	99	77.103	Ciona_intestinalis
ENSUMAG00000023270	RAB5C	99	75.000	ENSCSAVG00000000613	-	99	83.333	Ciona_savignyi
ENSUMAG00000023270	RAB5C	100	98.148	ENSCGRG00001014226	Rab5c	100	98.148	Cricetulus_griseus_chok1gshd
ENSUMAG00000023270	RAB5C	100	98.148	ENSCGRG00000007534	Rab5c	100	98.148	Cricetulus_griseus_crigri
ENSUMAG00000023270	RAB5C	99	90.741	ENSCSEG00000017024	rab5c	98	90.741	Cynoglossus_semilaevis
ENSUMAG00000023270	RAB5C	99	89.352	ENSCVAG00000009550	rab5c	98	90.741	Cyprinodon_variegatus
ENSUMAG00000023270	RAB5C	100	98.611	ENSDNOG00000038853	RAB5C	100	98.611	Dasypus_novemcinctus
ENSUMAG00000023270	RAB5C	100	98.611	ENSDORG00000006819	Rab5c	100	98.611	Dipodomys_ordii
ENSUMAG00000023270	RAB5C	99	74.648	FBgn0014010	Rab5	95	74.648	Drosophila_melanogaster
ENSUMAG00000023270	RAB5C	99	79.535	ENSEBUG00000014794	rab5c	100	79.535	Eptatretus_burgeri
ENSUMAG00000023270	RAB5C	100	99.537	ENSEASG00005009281	RAB5C	100	99.537	Equus_asinus_asinus
ENSUMAG00000023270	RAB5C	100	99.537	ENSECAG00000025054	RAB5C	100	99.537	Equus_caballus
ENSUMAG00000023270	RAB5C	100	99.074	ENSEEUG00000002790	RAB5C	100	99.074	Erinaceus_europaeus
ENSUMAG00000023270	RAB5C	99	87.963	ENSELUG00000018516	rab5c	99	89.815	Esox_lucius
ENSUMAG00000023270	RAB5C	99	88.889	ENSELUG00000010439	-	98	88.889	Esox_lucius
ENSUMAG00000023270	RAB5C	100	99.074	ENSFCAG00000002148	RAB5C	100	99.074	Felis_catus
ENSUMAG00000023270	RAB5C	100	95.370	ENSFDAG00000021541	RAB5C	100	95.370	Fukomys_damarensis
ENSUMAG00000023270	RAB5C	99	89.352	ENSFHEG00000012117	rab5c	98	90.741	Fundulus_heteroclitus
ENSUMAG00000023270	RAB5C	99	90.783	ENSFHEG00000015268	-	99	90.783	Fundulus_heteroclitus
ENSUMAG00000023270	RAB5C	99	87.963	ENSGMOG00000015096	rab5c	98	90.278	Gadus_morhua
ENSUMAG00000023270	RAB5C	78	88.166	ENSGMOG00000001876	-	98	88.166	Gadus_morhua
ENSUMAG00000023270	RAB5C	99	89.815	ENSGAFG00000000884	rab5c	98	91.204	Gambusia_affinis
ENSUMAG00000023270	RAB5C	96	90.952	ENSGAFG00000003642	-	99	87.783	Gambusia_affinis
ENSUMAG00000023270	RAB5C	87	94.681	ENSGACG00000008659	rab5c	99	86.175	Gasterosteus_aculeatus
ENSUMAG00000023270	RAB5C	100	99.074	ENSGGOG00000005472	RAB5C	100	99.074	Gorilla_gorilla
ENSUMAG00000023270	RAB5C	99	87.963	ENSHBUG00000002014	rab5c	98	90.278	Haplochromis_burtoni
ENSUMAG00000023270	RAB5C	96	89.100	ENSHBUG00000006823	-	99	88.584	Haplochromis_burtoni
ENSUMAG00000023270	RAB5C	100	94.907	ENSHGLG00000012067	RAB5C	100	94.907	Heterocephalus_glaber_female
ENSUMAG00000023270	RAB5C	99	89.862	ENSHCOG00000004662	rab5c	97	90.783	Hippocampus_comes
ENSUMAG00000023270	RAB5C	97	81.604	ENSHCOG00000020238	-	100	80.000	Hippocampus_comes
ENSUMAG00000023270	RAB5C	96	87.619	ENSIPUG00000020082	rab5c	98	88.532	Ictalurus_punctatus
ENSUMAG00000023270	RAB5C	100	97.685	ENSSTOG00000006620	RAB5C	100	97.685	Ictidomys_tridecemlineatus
ENSUMAG00000023270	RAB5C	100	99.074	ENSJJAG00000021181	Rab5c	100	99.074	Jaculus_jaculus
ENSUMAG00000023270	RAB5C	99	88.889	ENSKMAG00000020038	rab5c	98	90.741	Kryptolebias_marmoratus
ENSUMAG00000023270	RAB5C	99	88.018	ENSKMAG00000017417	-	99	88.018	Kryptolebias_marmoratus
ENSUMAG00000023270	RAB5C	99	90.278	ENSLBEG00000004128	rab5c	98	91.667	Labrus_bergylta
ENSUMAG00000023270	RAB5C	100	87.615	ENSLBEG00000010408	-	99	87.615	Labrus_bergylta
ENSUMAG00000023270	RAB5C	99	92.991	ENSLOCG00000012566	rab5c	100	92.991	Lepisosteus_oculatus
ENSUMAG00000023270	RAB5C	100	99.074	ENSMFAG00000039627	RAB5C	100	99.074	Macaca_fascicularis
ENSUMAG00000023270	RAB5C	100	99.074	ENSMNEG00000000355	RAB5C	100	99.074	Macaca_nemestrina
ENSUMAG00000023270	RAB5C	99	88.426	ENSMAMG00000022322	rab5c	98	90.278	Mastacembelus_armatus
ENSUMAG00000023270	RAB5C	99	88.479	ENSMAMG00000016207	-	99	88.479	Mastacembelus_armatus
ENSUMAG00000023270	RAB5C	99	87.963	ENSMZEG00005022735	rab5c	98	90.278	Maylandia_zebra
ENSUMAG00000023270	RAB5C	96	89.100	ENSMZEG00005021090	-	99	88.584	Maylandia_zebra
ENSUMAG00000023270	RAB5C	100	99.074	ENSMAUG00000015005	Rab5c	100	99.074	Mesocricetus_auratus
ENSUMAG00000023270	RAB5C	100	99.074	ENSMICG00000041608	RAB5C	100	99.074	Microcebus_murinus
ENSUMAG00000023270	RAB5C	100	98.148	ENSMOCG00000018531	-	100	98.148	Microtus_ochrogaster
ENSUMAG00000023270	RAB5C	100	89.450	ENSMMOG00000020621	rab5c	99	89.450	Mola_mola
ENSUMAG00000023270	RAB5C	99	87.156	ENSMALG00000022348	-	99	87.156	Monopterus_albus
ENSUMAG00000023270	RAB5C	97	84.434	ENSMALG00000006052	rab5c	96	84.259	Monopterus_albus
ENSUMAG00000023270	RAB5C	100	98.611	MGP_CAROLIEiJ_G0017184	Rab5c	100	98.611	Mus_caroli
ENSUMAG00000023270	RAB5C	100	98.611	ENSMUSG00000019173	Rab5c	100	98.611	Mus_musculus
ENSUMAG00000023270	RAB5C	100	98.611	MGP_PahariEiJ_G0018314	Rab5c	100	98.611	Mus_pahari
ENSUMAG00000023270	RAB5C	100	98.611	MGP_SPRETEiJ_G0018027	Rab5c	100	98.611	Mus_spretus
ENSUMAG00000023270	RAB5C	100	100.000	ENSMPUG00000010554	RAB5C	100	100.000	Mustela_putorius_furo
ENSUMAG00000023270	RAB5C	100	98.148	ENSNGAG00000010286	Rab5c	100	98.148	Nannospalax_galili
ENSUMAG00000023270	RAB5C	99	88.889	ENSNBRG00000018165	rab5c	98	91.204	Neolamprologus_brichardi
ENSUMAG00000023270	RAB5C	96	89.100	ENSNBRG00000016922	-	99	88.584	Neolamprologus_brichardi
ENSUMAG00000023270	RAB5C	82	92.697	ENSOPRG00000008255	RAB5C	100	92.697	Ochotona_princeps
ENSUMAG00000023270	RAB5C	100	96.296	ENSODEG00000017920	RAB5C	100	96.296	Octodon_degus
ENSUMAG00000023270	RAB5C	99	88.889	ENSONIG00000001113	rab5c	98	91.204	Oreochromis_niloticus
ENSUMAG00000023270	RAB5C	100	88.532	ENSORLG00000003882	rab5c	100	89.450	Oryzias_latipes
ENSUMAG00000023270	RAB5C	100	88.991	ENSORLG00020008388	rab5c	100	88.991	Oryzias_latipes_hni
ENSUMAG00000023270	RAB5C	100	88.532	ENSORLG00015021900	rab5c	100	89.450	Oryzias_latipes_hsok
ENSUMAG00000023270	RAB5C	100	88.532	ENSOMEG00000023078	rab5c	100	89.450	Oryzias_melastigma
ENSUMAG00000023270	RAB5C	100	99.074	ENSOGAG00000009456	RAB5C	100	99.074	Otolemur_garnettii
ENSUMAG00000023270	RAB5C	100	99.074	ENSOARG00000018768	RAB5C	100	99.074	Ovis_aries
ENSUMAG00000023270	RAB5C	100	99.074	ENSPPAG00000037206	RAB5C	100	99.074	Pan_paniscus
ENSUMAG00000023270	RAB5C	100	99.074	ENSPPRG00000005745	RAB5C	100	99.074	Panthera_pardus
ENSUMAG00000023270	RAB5C	100	99.074	ENSPTIG00000008177	RAB5C	100	99.074	Panthera_tigris_altaica
ENSUMAG00000023270	RAB5C	100	99.074	ENSPTRG00000009194	RAB5C	100	99.074	Pan_troglodytes
ENSUMAG00000023270	RAB5C	99	87.963	ENSPKIG00000020112	-	99	87.963	Paramormyrops_kingsleyae
ENSUMAG00000023270	RAB5C	99	88.837	ENSPKIG00000001237	-	99	88.837	Paramormyrops_kingsleyae
ENSUMAG00000023270	RAB5C	99	86.111	ENSPMGG00000010792	rab5c	97	89.573	Periophthalmus_magnuspinnatus
ENSUMAG00000023270	RAB5C	100	98.148	ENSPEMG00000017971	Rab5c	100	98.148	Peromyscus_maniculatus_bairdii
ENSUMAG00000023270	RAB5C	99	78.972	ENSPMAG00000007867	rab5c	99	78.972	Petromyzon_marinus
ENSUMAG00000023270	RAB5C	99	78.571	ENSPMAG00000000008	rab5c	100	78.571	Petromyzon_marinus
ENSUMAG00000023270	RAB5C	99	80.000	ENSPMAG00000001399	rab5c	100	80.000	Petromyzon_marinus
ENSUMAG00000023270	RAB5C	100	97.222	ENSPCIG00000020225	-	100	97.222	Phascolarctos_cinereus
ENSUMAG00000023270	RAB5C	99	89.815	ENSPLAG00000004790	rab5c	98	91.204	Poecilia_latipinna
ENSUMAG00000023270	RAB5C	99	89.862	ENSPLAG00000016333	-	99	89.862	Poecilia_latipinna
ENSUMAG00000023270	RAB5C	99	89.815	ENSPMEG00000011336	rab5c	98	91.204	Poecilia_mexicana
ENSUMAG00000023270	RAB5C	98	88.732	ENSPMEG00000012614	-	99	87.783	Poecilia_mexicana
ENSUMAG00000023270	RAB5C	87	92.593	ENSPREG00000022167	-	89	93.989	Poecilia_reticulata
ENSUMAG00000023270	RAB5C	99	89.815	ENSPREG00000010146	rab5c	98	91.204	Poecilia_reticulata
ENSUMAG00000023270	RAB5C	100	99.074	ENSPPYG00000008398	RAB5C	100	99.074	Pongo_abelii
ENSUMAG00000023270	RAB5C	100	98.148	ENSPCAG00000016412	RAB5C	100	98.148	Procavia_capensis
ENSUMAG00000023270	RAB5C	100	98.148	ENSPCOG00000026327	RAB5C	100	98.148	Propithecus_coquereli
ENSUMAG00000023270	RAB5C	100	99.537	ENSPVAG00000003867	RAB5C	100	99.537	Pteropus_vampyrus
ENSUMAG00000023270	RAB5C	96	89.100	ENSPNYG00000015851	-	99	88.584	Pundamilia_nyererei
ENSUMAG00000023270	RAB5C	99	87.963	ENSPNYG00000010615	rab5c	98	90.278	Pundamilia_nyererei
ENSUMAG00000023270	RAB5C	99	90.783	ENSPNAG00000028138	rab5c	98	90.783	Pygocentrus_nattereri
ENSUMAG00000023270	RAB5C	97	86.792	ENSPNAG00000002218	-	99	88.679	Pygocentrus_nattereri
ENSUMAG00000023270	RAB5C	100	99.074	ENSRNOG00000018568	Rab5c	100	99.074	Rattus_norvegicus
ENSUMAG00000023270	RAB5C	100	99.074	ENSRBIG00000031376	RAB5C	100	99.074	Rhinopithecus_bieti
ENSUMAG00000023270	RAB5C	100	99.074	ENSRROG00000032895	RAB5C	100	99.074	Rhinopithecus_roxellana
ENSUMAG00000023270	RAB5C	100	98.611	ENSSBOG00000032552	-	100	98.611	Saimiri_boliviensis_boliviensis
ENSUMAG00000023270	RAB5C	100	97.685	ENSSHAG00000005267	-	100	97.685	Sarcophilus_harrisii
ENSUMAG00000023270	RAB5C	99	87.097	ENSSFOG00015009988	-	99	87.097	Scleropages_formosus
ENSUMAG00000023270	RAB5C	96	91.827	ENSSMAG00000007323	rab5c	98	89.815	Scophthalmus_maximus
ENSUMAG00000023270	RAB5C	99	91.204	ENSSDUG00000023008	rab5c	98	91.204	Seriola_dumerili
ENSUMAG00000023270	RAB5C	99	90.741	ENSSLDG00000017771	rab5c	98	90.741	Seriola_lalandi_dorsalis
ENSUMAG00000023270	RAB5C	100	95.833	ENSSPUG00000012950	-	100	95.833	Sphenodon_punctatus
ENSUMAG00000023270	RAB5C	99	89.815	ENSSPAG00000006436	rab5c	98	92.130	Stegastes_partitus
ENSUMAG00000023270	RAB5C	100	99.074	ENSSSCG00000032467	RAB5C	100	99.074	Sus_scrofa
ENSUMAG00000023270	RAB5C	99	87.963	ENSTRUG00000015590	rab5c	98	89.815	Takifugu_rubripes
ENSUMAG00000023270	RAB5C	96	90.431	ENSTNIG00000011711	rab5c	95	90.431	Tetraodon_nigroviridis
ENSUMAG00000023270	RAB5C	100	99.074	ENSTBEG00000007092	RAB5C	100	99.074	Tupaia_belangeri
ENSUMAG00000023270	RAB5C	100	98.148	ENSTTRG00000006673	RAB5C	100	98.148	Tursiops_truncatus
ENSUMAG00000023270	RAB5C	100	100.000	ENSUAMG00000024343	RAB5C	100	100.000	Ursus_americanus
ENSUMAG00000023270	RAB5C	99	89.352	ENSXCOG00000016788	rab5c	98	91.204	Xiphophorus_couchianus
ENSUMAG00000023270	RAB5C	96	91.429	ENSXCOG00000006300	-	99	87.838	Xiphophorus_couchianus
ENSUMAG00000023270	RAB5C	99	89.815	ENSXMAG00000003266	rab5c	98	91.204	Xiphophorus_maculatus
ENSUMAG00000023270	RAB5C	99	90.323	ENSXMAG00000022179	-	99	90.323	Xiphophorus_maculatus