EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000023934 (Gene tree)
Gene ID: 103671993
Gene Symbol: PABPC5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrKK498655.1:762530-763678
Accession: 103671993
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000033199	RRM_5	PF13893.6	1.7e-11	1	2
ENSUMAP00000033199	RRM_5	PF13893.6	1.7e-11	2	2
ENSUMAP00000033199	RRM_1	PF00076.22	1.7e-78	1	4
ENSUMAP00000033199	RRM_1	PF00076.22	1.7e-78	2	4
ENSUMAP00000033199	RRM_1	PF00076.22	1.7e-78	3	4
ENSUMAP00000033199	RRM_1	PF00076.22	1.7e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000039278	PABPC5-201	1149	-	ENSUMAP00000033199	382 (aa)	XP_008698855	UPI0004E016F2

Gene Model

Click here to download ENSUMAG00000023934's gene model file

Pathways

Pathway ID	Pathway Name	Source
umr03013	RNA transport	KEGG
umr03015	mRNA surveillance pathway	KEGG
umr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000023934's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000023934	PABPC5	96	62.637	ENSUMAG00000014887	PABPC4L	98	62.640
ENSUMAG00000023934	PABPC5	94	35.802	ENSUMAG00000005644	ELAVL2	90	35.802
ENSUMAG00000023934	PABPC5	63	30.508	ENSUMAG00000011068	TRNAU1AP	60	30.061
ENSUMAG00000023934	PABPC5	96	66.575	ENSUMAG00000019585	PABPC4	69	66.760
ENSUMAG00000023934	PABPC5	93	60.204	ENSUMAG00000003364	-	98	59.896
ENSUMAG00000023934	PABPC5	95	58.333	ENSUMAG00000025436	PABPC1L	83	58.333
ENSUMAG00000023934	PABPC5	95	64.784	ENSUMAG00000017554	PABPC1	54	64.784
ENSUMAG00000023934	PABPC5	98	53.067	ENSUMAG00000023926	-	89	53.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000023934	PABPC5	99	96.588	ENSG00000174740	PABPC5	99	96.588	Homo_sapiens
ENSUMAG00000023934	PABPC5	99	99.213	ENSAMEG00000020114	PABPC5	100	99.213	Ailuropoda_melanoleuca
ENSUMAG00000023934	PABPC5	99	96.588	ENSANAG00000005063	PABPC5	99	96.588	Aotus_nancymaae
ENSUMAG00000023934	PABPC5	100	96.073	ENSBTAG00000019942	PABPC5	100	96.073	Bos_taurus
ENSUMAG00000023934	PABPC5	99	96.063	ENSCJAG00000003665	PABPC5	99	96.063	Callithrix_jacchus
ENSUMAG00000023934	PABPC5	100	98.691	ENSCAFG00000017452	PABPC5	100	98.691	Canis_familiaris
ENSUMAG00000023934	PABPC5	100	96.073	ENSCHIG00000019004	PABPC5	100	96.073	Capra_hircus
ENSUMAG00000023934	PABPC5	100	96.073	ENSTSYG00000036351	PABPC5	100	96.073	Carlito_syrichta
ENSUMAG00000023934	PABPC5	99	86.911	ENSCAPG00000010714	PABPC5	100	86.911	Cavia_aperea
ENSUMAG00000023934	PABPC5	100	93.455	ENSCPOG00000002555	PABPC5	100	93.455	Cavia_porcellus
ENSUMAG00000023934	PABPC5	99	96.588	ENSCCAG00000032154	PABPC5	99	96.588	Cebus_capucinus
ENSUMAG00000023934	PABPC5	99	96.588	ENSCATG00000043083	PABPC5	99	96.588	Cercocebus_atys
ENSUMAG00000023934	PABPC5	100	94.503	ENSCLAG00000000647	PABPC5	100	94.503	Chinchilla_lanigera
ENSUMAG00000023934	PABPC5	99	96.588	ENSCSAG00000000065	PABPC5	99	96.588	Chlorocebus_sabaeus
ENSUMAG00000023934	PABPC5	99	96.588	ENSCANG00000011473	PABPC5	99	96.588	Colobus_angolensis_palliatus
ENSUMAG00000023934	PABPC5	100	92.932	ENSCGRG00000018699	Pabpc5	100	92.932	Cricetulus_griseus_crigri
ENSUMAG00000023934	PABPC5	100	77.807	ENSETEG00000011832	PABPC5	100	77.807	Echinops_telfairi
ENSUMAG00000023934	PABPC5	100	97.382	ENSEASG00005014396	PABPC5	100	97.382	Equus_asinus_asinus
ENSUMAG00000023934	PABPC5	100	97.382	ENSECAG00000003452	PABPC5	100	97.382	Equus_caballus
ENSUMAG00000023934	PABPC5	100	98.953	ENSFCAG00000004998	PABPC5	100	98.953	Felis_catus
ENSUMAG00000023934	PABPC5	100	96.073	ENSFDAG00000000126	PABPC5	100	96.073	Fukomys_damarensis
ENSUMAG00000023934	PABPC5	99	96.588	ENSGGOG00000007622	PABPC5	99	96.588	Gorilla_gorilla
ENSUMAG00000023934	PABPC5	95	95.413	ENSJJAG00000011960	Pabpc5	100	95.413	Jaculus_jaculus
ENSUMAG00000023934	PABPC5	99	96.588	ENSMFAG00000024561	PABPC5	99	96.588	Macaca_fascicularis
ENSUMAG00000023934	PABPC5	99	96.588	ENSMMUG00000011562	PABPC5	99	96.588	Macaca_mulatta
ENSUMAG00000023934	PABPC5	99	96.588	ENSMNEG00000037604	PABPC5	99	96.588	Macaca_nemestrina
ENSUMAG00000023934	PABPC5	99	96.588	ENSMLEG00000028318	PABPC5	99	96.588	Mandrillus_leucophaeus
ENSUMAG00000023934	PABPC5	100	95.812	ENSMICG00000041706	PABPC5	100	95.812	Microcebus_murinus
ENSUMAG00000023934	PABPC5	100	94.764	ENSMOCG00000001554	Pabpc5	100	94.764	Microtus_ochrogaster
ENSUMAG00000023934	PABPC5	99	92.895	MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.895	Mus_caroli
ENSUMAG00000023934	PABPC5	99	93.421	ENSMUSG00000034732	Pabpc5	99	93.421	Mus_musculus
ENSUMAG00000023934	PABPC5	100	93.717	MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	Mus_pahari
ENSUMAG00000023934	PABPC5	99	93.421	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	Mus_spretus
ENSUMAG00000023934	PABPC5	100	98.168	ENSMPUG00000018465	PABPC5	100	98.168	Mustela_putorius_furo
ENSUMAG00000023934	PABPC5	100	95.812	ENSMLUG00000008244	PABPC5	100	95.812	Myotis_lucifugus
ENSUMAG00000023934	PABPC5	95	94.495	ENSNGAG00000004371	Pabpc5	100	94.495	Nannospalax_galili
ENSUMAG00000023934	PABPC5	99	96.588	ENSNLEG00000035086	PABPC5	99	96.588	Nomascus_leucogenys
ENSUMAG00000023934	PABPC5	98	97.727	ENSOPRG00000000856	PABPC5	99	97.727	Ochotona_princeps
ENSUMAG00000023934	PABPC5	100	96.335	ENSOCUG00000010919	PABPC5	100	96.335	Oryctolagus_cuniculus
ENSUMAG00000023934	PABPC5	100	95.812	ENSOGAG00000006882	PABPC5	100	95.812	Otolemur_garnettii
ENSUMAG00000023934	PABPC5	100	96.335	ENSOARG00000010260	PABPC5	100	96.335	Ovis_aries
ENSUMAG00000023934	PABPC5	99	96.325	ENSPPAG00000007378	PABPC5	99	96.325	Pan_paniscus
ENSUMAG00000023934	PABPC5	100	98.953	ENSPPRG00000010742	PABPC5	100	98.953	Panthera_pardus
ENSUMAG00000023934	PABPC5	100	98.953	ENSPTIG00000001480	PABPC5	100	98.953	Panthera_tigris_altaica
ENSUMAG00000023934	PABPC5	99	96.588	ENSPTRG00000022078	PABPC5	99	96.588	Pan_troglodytes
ENSUMAG00000023934	PABPC5	99	96.588	ENSPANG00000018282	PABPC5	99	96.588	Papio_anubis
ENSUMAG00000023934	PABPC5	100	93.717	ENSPEMG00000000171	Pabpc5	100	93.717	Peromyscus_maniculatus_bairdii
ENSUMAG00000023934	PABPC5	99	96.588	ENSPPYG00000020526	PABPC5	99	96.588	Pongo_abelii
ENSUMAG00000023934	PABPC5	99	96.727	ENSPCAG00000015577	PABPC5	100	96.727	Procavia_capensis
ENSUMAG00000023934	PABPC5	100	96.335	ENSPCOG00000000676	PABPC5	100	96.335	Propithecus_coquereli
ENSUMAG00000023934	PABPC5	100	97.120	ENSPVAG00000006465	PABPC5	100	97.120	Pteropus_vampyrus
ENSUMAG00000023934	PABPC5	100	93.455	ENSRNOG00000003354	Pabpc5	100	93.455	Rattus_norvegicus
ENSUMAG00000023934	PABPC5	99	96.588	ENSRBIG00000011760	PABPC5	99	96.588	Rhinopithecus_bieti
ENSUMAG00000023934	PABPC5	99	96.588	ENSRROG00000036708	PABPC5	99	96.588	Rhinopithecus_roxellana
ENSUMAG00000023934	PABPC5	99	96.588	ENSSBOG00000008658	PABPC5	99	96.588	Saimiri_boliviensis_boliviensis
ENSUMAG00000023934	PABPC5	100	94.241	ENSSARG00000014012	PABPC5	100	94.241	Sorex_araneus
ENSUMAG00000023934	PABPC5	100	96.859	ENSSSCG00000040194	PABPC5	100	96.859	Sus_scrofa
ENSUMAG00000023934	PABPC5	100	97.120	ENSTBEG00000016482	PABPC5	100	97.120	Tupaia_belangeri
ENSUMAG00000023934	PABPC5	100	99.738	ENSUAMG00000013627	PABPC5	100	99.738	Ursus_americanus
ENSUMAG00000023934	PABPC5	100	96.859	ENSVPAG00000001063	PABPC5	100	96.859	Vicugna_pacos
ENSUMAG00000023934	PABPC5	100	98.953	ENSVVUG00000013172	PABPC5	100	98.953	Vulpes_vulpes