EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSUMAG00000025436 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Ursus_maritimus
Status: putative
Strand: Minus strand
Length: 11832 bases
Position: chrKK498640.1:7538236-7550067
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSUMAP00000035389	RRM_5	PF13893.6	2.4e-08	1	1
ENSUMAP00000035389	RRM_1	PF00076.22	5.8e-70	1	3
ENSUMAP00000035389	RRM_1	PF00076.22	5.8e-70	2	3
ENSUMAP00000035389	RRM_1	PF00076.22	5.8e-70	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSUMAT00000041859	PABPC1L-201	1176	-	ENSUMAP00000035389	391 (aa)	-	-

Gene Model

Click here to download ENSUMAG00000025436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSUMAG00000025436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSUMAG00000025436	PABPC1L	86	33.708	ENSUMAG00000023149	ELAVL4	97	34.940
ENSUMAG00000025436	PABPC1L	81	65.517	ENSUMAG00000003364	-	99	65.517
ENSUMAG00000025436	PABPC1L	86	36.957	ENSUMAG00000014798	ELAVL1	90	36.957
ENSUMAG00000025436	PABPC1L	83	58.333	ENSUMAG00000023934	PABPC5	95	58.333
ENSUMAG00000025436	PABPC1L	69	39.437	ENSUMAG00000009804	MYEF2	92	39.437
ENSUMAG00000025436	PABPC1L	92	75.482	ENSUMAG00000019585	PABPC4	79	75.482
ENSUMAG00000025436	PABPC1L	86	36.145	ENSUMAG00000005644	ELAVL2	94	36.145
ENSUMAG00000025436	PABPC1L	81	36.170	ENSUMAG00000003802	SF3B4	55	36.296
ENSUMAG00000025436	PABPC1L	59	42.105	ENSUMAG00000007785	RBM3	62	39.759
ENSUMAG00000025436	PABPC1L	74	31.405	ENSUMAG00000012780	CELF2	63	31.405
ENSUMAG00000025436	PABPC1L	70	32.231	ENSUMAG00000009218	CELF1	62	32.231
ENSUMAG00000025436	PABPC1L	83	63.141	ENSUMAG00000014887	PABPC4L	97	63.141
ENSUMAG00000025436	PABPC1L	79	35.616	ENSUMAG00000001772	CELF3	97	35.616
ENSUMAG00000025436	PABPC1L	93	74.114	ENSUMAG00000017554	PABPC1	65	74.114
ENSUMAG00000025436	PABPC1L	85	61.145	ENSUMAG00000023926	-	87	61.386

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSUMAG00000025436	PABPC1L	94	90.244	ENSG00000101104	PABPC1L	96	92.105	Homo_sapiens
ENSUMAG00000025436	PABPC1L	92	72.981	ENSAPOG00000010842	pabpc1l	67	72.981	Acanthochromis_polyacanthus
ENSUMAG00000025436	PABPC1L	94	97.003	ENSAMEG00000004099	PABPC1L	65	97.003	Ailuropoda_melanoleuca
ENSUMAG00000025436	PABPC1L	93	73.278	ENSACIG00000021004	-	76	74.359	Amphilophus_citrinellus
ENSUMAG00000025436	PABPC1L	92	72.423	ENSAOCG00000006167	-	65	72.423	Amphiprion_ocellaris
ENSUMAG00000025436	PABPC1L	94	71.390	ENSAPEG00000010558	-	93	75.000	Amphiprion_percula
ENSUMAG00000025436	PABPC1L	92	74.095	ENSATEG00000007428	pabpc1l	66	74.095	Anabas_testudineus
ENSUMAG00000025436	PABPC1L	92	81.616	ENSAPLG00000008415	PABPC1L	65	81.616	Anas_platyrhynchos
ENSUMAG00000025436	PABPC1L	92	80.886	ENSACAG00000011841	PABPC1L	65	80.886	Anolis_carolinensis
ENSUMAG00000025436	PABPC1L	94	88.889	ENSANAG00000026826	PABPC1L	67	88.889	Aotus_nancymaae
ENSUMAG00000025436	PABPC1L	92	73.538	ENSACLG00000024791	pabpc1l	65	73.538	Astatotilapia_calliptera
ENSUMAG00000025436	PABPC1L	92	77.159	ENSAMXG00000013552	pabpc1l	66	77.159	Astyanax_mexicanus
ENSUMAG00000025436	PABPC1L	85	85.547	ENSBTAG00000016849	PABPC1L	78	85.547	Bos_taurus
ENSUMAG00000025436	PABPC1L	84	92.727	ENSBTAG00000055300	-	96	92.727	Bos_taurus
ENSUMAG00000025436	PABPC1L	94	88.889	ENSCJAG00000017628	PABPC1L	67	88.889	Callithrix_jacchus
ENSUMAG00000025436	PABPC1L	79	72.414	ENSCJAG00000038506	-	98	72.414	Callithrix_jacchus
ENSUMAG00000025436	PABPC1L	92	93.629	ENSCAFG00000009573	PABPC1L	64	93.629	Canis_familiaris
ENSUMAG00000025436	PABPC1L	94	92.412	ENSCAFG00020013828	PABPC1L	68	92.412	Canis_lupus_dingo
ENSUMAG00000025436	PABPC1L	94	91.870	ENSCHIG00000025759	PABPC1L	64	91.870	Capra_hircus
ENSUMAG00000025436	PABPC1L	94	87.263	ENSTSYG00000006645	PABPC1L	68	87.263	Carlito_syrichta
ENSUMAG00000025436	PABPC1L	93	83.425	ENSCAPG00000014519	PABPC1L	67	83.425	Cavia_aperea
ENSUMAG00000025436	PABPC1L	94	85.637	ENSCPOG00000013633	PABPC1L	68	85.637	Cavia_porcellus
ENSUMAG00000025436	PABPC1L	90	90.857	ENSCCAG00000023338	PABPC1L	67	88.618	Cebus_capucinus
ENSUMAG00000025436	PABPC1L	94	90.786	ENSCATG00000034065	PABPC1L	67	90.786	Cercocebus_atys
ENSUMAG00000025436	PABPC1L	90	89.143	ENSCLAG00000005298	PABPC1L	68	86.957	Chinchilla_lanigera
ENSUMAG00000025436	PABPC1L	94	90.515	ENSCSAG00000014242	PABPC1L	67	90.515	Chlorocebus_sabaeus
ENSUMAG00000025436	PABPC1L	94	79.576	ENSCPBG00000017755	-	96	79.576	Chrysemys_picta_bellii
ENSUMAG00000025436	PABPC1L	81	78.049	ENSCPBG00000007810	-	81	78.049	Chrysemys_picta_bellii
ENSUMAG00000025436	PABPC1L	79	60.000	ENSCING00000002796	-	53	60.000	Ciona_intestinalis
ENSUMAG00000025436	PABPC1L	90	60.784	ENSCSAVG00000003102	-	100	74.227	Ciona_savignyi
ENSUMAG00000025436	PABPC1L	90	63.818	ENSCSAVG00000004246	-	71	63.788	Ciona_savignyi
ENSUMAG00000025436	PABPC1L	94	90.786	ENSCANG00000037530	PABPC1L	67	90.786	Colobus_angolensis_palliatus
ENSUMAG00000025436	PABPC1L	91	82.535	ENSCGRG00001021938	Pabpc1l	67	82.535	Cricetulus_griseus_chok1gshd
ENSUMAG00000025436	PABPC1L	91	82.535	ENSCGRG00000007946	Pabpc1l	67	82.535	Cricetulus_griseus_crigri
ENSUMAG00000025436	PABPC1L	90	73.371	ENSCSEG00000021295	pabpc1l	73	73.371	Cynoglossus_semilaevis
ENSUMAG00000025436	PABPC1L	92	72.981	ENSCVAG00000015943	-	80	79.452	Cyprinodon_variegatus
ENSUMAG00000025436	PABPC1L	94	74.332	ENSDARG00000002597	pabpc1l	86	83.333	Danio_rerio
ENSUMAG00000025436	PABPC1L	94	92.412	ENSDNOG00000048450	PABPC1L	68	92.412	Dasypus_novemcinctus
ENSUMAG00000025436	PABPC1L	94	87.805	ENSDORG00000001067	Pabpc1l	68	87.805	Dipodomys_ordii
ENSUMAG00000025436	PABPC1L	84	92.727	ENSEASG00005023408	-	100	92.727	Equus_asinus_asinus
ENSUMAG00000025436	PABPC1L	80	91.925	ENSEASG00005023407	-	65	91.925	Equus_asinus_asinus
ENSUMAG00000025436	PABPC1L	85	82.895	ENSECAG00000040139	-	82	82.895	Equus_caballus
ENSUMAG00000025436	PABPC1L	94	87.766	ENSEEUG00000005978	PABPC1L	69	87.766	Erinaceus_europaeus
ENSUMAG00000025436	PABPC1L	93	75.000	ENSELUG00000001811	pabpc1l	74	75.000	Esox_lucius
ENSUMAG00000025436	PABPC1L	94	93.496	ENSFCAG00000011692	PABPC1L	68	93.496	Felis_catus
ENSUMAG00000025436	PABPC1L	92	83.008	ENSFALG00000005372	PABPC1L	69	83.008	Ficedula_albicollis
ENSUMAG00000025436	PABPC1L	94	87.805	ENSFDAG00000008291	PABPC1L	71	87.805	Fukomys_damarensis
ENSUMAG00000025436	PABPC1L	92	73.538	ENSFHEG00000003398	pabpc1l	72	68.041	Fundulus_heteroclitus
ENSUMAG00000025436	PABPC1L	93	73.554	ENSGMOG00000004437	pabpc1l	66	73.554	Gadus_morhua
ENSUMAG00000025436	PABPC1L	93	81.543	ENSGALG00000004123	PABPC1L	98	81.543	Gallus_gallus
ENSUMAG00000025436	PABPC1L	92	67.519	ENSGAFG00000021057	pabpc1l	68	67.519	Gambusia_affinis
ENSUMAG00000025436	PABPC1L	96	68.274	ENSGACG00000002792	pabpc1l	71	68.274	Gasterosteus_aculeatus
ENSUMAG00000025436	PABPC1L	92	82.451	ENSGAGG00000000589	PABPC1L	74	82.451	Gopherus_agassizii
ENSUMAG00000025436	PABPC1L	94	90.244	ENSGGOG00000004584	PABPC1L	67	90.244	Gorilla_gorilla
ENSUMAG00000025436	PABPC1L	93	72.652	ENSHBUG00000006134	pabpc1l	73	72.652	Haplochromis_burtoni
ENSUMAG00000025436	PABPC1L	94	87.534	ENSHGLG00000008434	PABPC1L	69	87.534	Heterocephalus_glaber_female
ENSUMAG00000025436	PABPC1L	94	87.534	ENSHGLG00100012151	PABPC1L	69	87.534	Heterocephalus_glaber_male
ENSUMAG00000025436	PABPC1L	77	81.579	ENSHGLG00100019506	-	99	81.579	Heterocephalus_glaber_male
ENSUMAG00000025436	PABPC1L	92	74.581	ENSHCOG00000009270	pabpc1l	71	74.581	Hippocampus_comes
ENSUMAG00000025436	PABPC1L	67	72.727	ENSIPUG00000005537	-	98	72.727	Ictalurus_punctatus
ENSUMAG00000025436	PABPC1L	80	58.333	ENSIPUG00000006780	-	84	58.333	Ictalurus_punctatus
ENSUMAG00000025436	PABPC1L	95	74.474	ENSIPUG00000012602	pabpc1l	75	74.474	Ictalurus_punctatus
ENSUMAG00000025436	PABPC1L	80	57.500	ENSIPUG00000006760	-	87	57.500	Ictalurus_punctatus
ENSUMAG00000025436	PABPC1L	94	91.530	ENSSTOG00000003739	PABPC1L	68	91.530	Ictidomys_tridecemlineatus
ENSUMAG00000025436	PABPC1L	89	72.174	ENSJJAG00000022406	Pabpc1l	62	72.174	Jaculus_jaculus
ENSUMAG00000025436	PABPC1L	92	74.652	ENSKMAG00000016847	pabpc1l	72	74.652	Kryptolebias_marmoratus
ENSUMAG00000025436	PABPC1L	96	70.133	ENSLBEG00000010084	pabpc1l	70	70.133	Labrus_bergylta
ENSUMAG00000025436	PABPC1L	96	76.440	ENSLACG00000005762	PABPC1L	78	76.440	Latimeria_chalumnae
ENSUMAG00000025436	PABPC1L	92	77.716	ENSLOCG00000007519	pabpc1l	65	77.716	Lepisosteus_oculatus
ENSUMAG00000025436	PABPC1L	94	89.973	ENSLAFG00000003553	PABPC1L	66	89.973	Loxodonta_africana
ENSUMAG00000025436	PABPC1L	94	90.786	ENSMFAG00000040365	PABPC1L	67	90.786	Macaca_fascicularis
ENSUMAG00000025436	PABPC1L	94	90.786	ENSMNEG00000032298	PABPC1L	67	90.786	Macaca_nemestrina
ENSUMAG00000025436	PABPC1L	94	90.786	ENSMLEG00000043139	PABPC1L	67	90.786	Mandrillus_leucophaeus
ENSUMAG00000025436	PABPC1L	92	72.702	ENSMAMG00000011854	pabpc1l	67	72.702	Mastacembelus_armatus
ENSUMAG00000025436	PABPC1L	92	73.538	ENSMZEG00005023713	pabpc1l	65	73.538	Maylandia_zebra
ENSUMAG00000025436	PABPC1L	94	79.310	ENSMGAG00000003674	PABPC1L	65	82.173	Meleagris_gallopavo
ENSUMAG00000025436	PABPC1L	91	82.254	ENSMOCG00000013186	Pabpc1l	67	82.254	Microtus_ochrogaster
ENSUMAG00000025436	PABPC1L	92	73.816	ENSMMOG00000020574	-	85	80.556	Mola_mola
ENSUMAG00000025436	PABPC1L	96	82.667	ENSMODG00000016198	PABPC1L	72	82.667	Monodelphis_domestica
ENSUMAG00000025436	PABPC1L	92	72.423	ENSMALG00000021622	pabpc1l	68	72.423	Monopterus_albus
ENSUMAG00000025436	PABPC1L	91	83.944	MGP_CAROLIEiJ_G0024627	Pabpc1l	67	83.944	Mus_caroli
ENSUMAG00000025436	PABPC1L	91	83.944	ENSMUSG00000054582	Pabpc1l	67	83.944	Mus_musculus
ENSUMAG00000025436	PABPC1L	91	84.225	MGP_PahariEiJ_G0026071	Pabpc1l	67	84.225	Mus_pahari
ENSUMAG00000025436	PABPC1L	91	83.944	MGP_SPRETEiJ_G0025549	Pabpc1l	67	83.944	Mus_spretus
ENSUMAG00000025436	PABPC1L	94	93.496	ENSMPUG00000017646	PABPC1L	67	93.496	Mustela_putorius_furo
ENSUMAG00000025436	PABPC1L	94	84.718	ENSMLUG00000006324	PABPC1L	66	84.718	Myotis_lucifugus
ENSUMAG00000025436	PABPC1L	91	85.352	ENSNGAG00000010458	Pabpc1l	67	85.352	Nannospalax_galili
ENSUMAG00000025436	PABPC1L	93	72.652	ENSNBRG00000016633	pabpc1l	76	74.359	Neolamprologus_brichardi
ENSUMAG00000025436	PABPC1L	94	79.841	ENSMEUG00000007905	-	69	79.841	Notamacropus_eugenii
ENSUMAG00000025436	PABPC1L	95	88.172	ENSOPRG00000011846	PABPC1L	69	88.172	Ochotona_princeps
ENSUMAG00000025436	PABPC1L	76	79.412	ENSODEG00000002920	-	89	79.412	Octodon_degus
ENSUMAG00000025436	PABPC1L	91	89.296	ENSODEG00000015482	PABPC1L	75	89.296	Octodon_degus
ENSUMAG00000025436	PABPC1L	91	74.085	ENSONIG00000017314	pabpc1l	65	74.085	Oreochromis_niloticus
ENSUMAG00000025436	PABPC1L	95	69.010	ENSOANG00000015793	-	77	69.010	Ornithorhynchus_anatinus
ENSUMAG00000025436	PABPC1L	94	84.367	ENSOCUG00000003005	PABPC1L	65	84.367	Oryctolagus_cuniculus
ENSUMAG00000025436	PABPC1L	92	73.816	ENSORLG00000010322	pabpc1l	76	74.359	Oryzias_latipes
ENSUMAG00000025436	PABPC1L	92	73.816	ENSORLG00020021193	pabpc1l	76	74.359	Oryzias_latipes_hni
ENSUMAG00000025436	PABPC1L	92	73.816	ENSORLG00015017018	pabpc1l	76	74.359	Oryzias_latipes_hsok
ENSUMAG00000025436	PABPC1L	92	68.557	ENSOMEG00000010789	pabpc1l	66	68.557	Oryzias_melastigma
ENSUMAG00000025436	PABPC1L	94	89.702	ENSOGAG00000032999	PABPC1L	66	89.702	Otolemur_garnettii
ENSUMAG00000025436	PABPC1L	94	92.412	ENSOARG00000004578	PABPC1L	67	92.412	Ovis_aries
ENSUMAG00000025436	PABPC1L	94	89.973	ENSPPAG00000039677	PABPC1L	67	89.973	Pan_paniscus
ENSUMAG00000025436	PABPC1L	84	78.571	ENSPPRG00000019327	-	95	78.571	Panthera_pardus
ENSUMAG00000025436	PABPC1L	94	93.496	ENSPTIG00000006524	PABPC1L	68	93.496	Panthera_tigris_altaica
ENSUMAG00000025436	PABPC1L	84	91.729	ENSPTRG00000013531	PABPC1L	96	91.729	Pan_troglodytes
ENSUMAG00000025436	PABPC1L	94	90.786	ENSPANG00000018788	PABPC1L	67	90.786	Papio_anubis
ENSUMAG00000025436	PABPC1L	94	74.271	ENSPKIG00000007322	pabpc1l	74	68.966	Paramormyrops_kingsleyae
ENSUMAG00000025436	PABPC1L	69	80.822	ENSPKIG00000016810	-	91	80.822	Paramormyrops_kingsleyae
ENSUMAG00000025436	PABPC1L	93	81.492	ENSPSIG00000013289	PABPC1L	98	81.492	Pelodiscus_sinensis
ENSUMAG00000025436	PABPC1L	84	74.854	ENSPMGG00000023121	-	79	74.854	Periophthalmus_magnuspinnatus
ENSUMAG00000025436	PABPC1L	84	78.378	ENSPMGG00000023117	pabpc1l	94	72.611	Periophthalmus_magnuspinnatus
ENSUMAG00000025436	PABPC1L	91	83.380	ENSPEMG00000020671	Pabpc1l	67	83.380	Peromyscus_maniculatus_bairdii
ENSUMAG00000025436	PABPC1L	92	73.538	ENSPFOG00000013241	pabpc1l	66	73.538	Poecilia_formosa
ENSUMAG00000025436	PABPC1L	92	73.538	ENSPLAG00000017490	-	73	73.538	Poecilia_latipinna
ENSUMAG00000025436	PABPC1L	68	81.944	ENSPLAG00000023686	-	87	81.944	Poecilia_latipinna
ENSUMAG00000025436	PABPC1L	68	81.944	ENSPMEG00000009185	-	84	84.058	Poecilia_mexicana
ENSUMAG00000025436	PABPC1L	92	73.538	ENSPMEG00000007677	pabpc1l	66	73.538	Poecilia_mexicana
ENSUMAG00000025436	PABPC1L	91	74.157	ENSPREG00000015886	pabpc1l	99	74.157	Poecilia_reticulata
ENSUMAG00000025436	PABPC1L	94	90.515	ENSPPYG00000011042	PABPC1L	67	90.515	Pongo_abelii
ENSUMAG00000025436	PABPC1L	80	65.306	ENSPCAG00000011787	-	59	65.306	Procavia_capensis
ENSUMAG00000025436	PABPC1L	94	88.076	ENSPCOG00000020630	PABPC1L	68	88.076	Propithecus_coquereli
ENSUMAG00000025436	PABPC1L	94	88.076	ENSPVAG00000012663	PABPC1L	67	88.076	Pteropus_vampyrus
ENSUMAG00000025436	PABPC1L	92	73.538	ENSPNYG00000004101	pabpc1l	76	74.359	Pundamilia_nyererei
ENSUMAG00000025436	PABPC1L	91	66.197	ENSPNAG00000021248	pabpc1l	63	66.197	Pygocentrus_nattereri
ENSUMAG00000025436	PABPC1L	92	82.451	ENSRNOG00000012750	Pabpc1l	66	82.451	Rattus_norvegicus
ENSUMAG00000025436	PABPC1L	94	90.515	ENSRBIG00000035381	PABPC1L	67	90.515	Rhinopithecus_bieti
ENSUMAG00000025436	PABPC1L	94	89.973	ENSRROG00000044498	PABPC1L	67	89.973	Rhinopithecus_roxellana
ENSUMAG00000025436	PABPC1L	94	88.889	ENSSBOG00000009532	-	67	88.889	Saimiri_boliviensis_boliviensis
ENSUMAG00000025436	PABPC1L	93	79.479	ENSSHAG00000011446	PABPC1L	63	79.479	Sarcophilus_harrisii
ENSUMAG00000025436	PABPC1L	94	75.532	ENSSFOG00015017304	pabpc1l	68	75.532	Scleropages_formosus
ENSUMAG00000025436	PABPC1L	92	73.259	ENSSMAG00000010516	pabpc1l	96	80.282	Scophthalmus_maximus
ENSUMAG00000025436	PABPC1L	92	74.930	ENSSDUG00000014743	pabpc1l	66	74.930	Seriola_dumerili
ENSUMAG00000025436	PABPC1L	94	72.460	ENSSLDG00000006981	pabpc1l	95	72.050	Seriola_lalandi_dorsalis
ENSUMAG00000025436	PABPC1L	92	81.337	ENSSPUG00000004233	PABPC1L	64	81.337	Sphenodon_punctatus
ENSUMAG00000025436	PABPC1L	92	72.145	ENSSPAG00000017137	pabpc1l	73	72.145	Stegastes_partitus
ENSUMAG00000025436	PABPC1L	92	92.521	ENSSSCG00000007382	PABPC1L	68	92.521	Sus_scrofa
ENSUMAG00000025436	PABPC1L	92	80.323	ENSTGUG00000005114	PABPC1L	66	80.323	Taeniopygia_guttata
ENSUMAG00000025436	PABPC1L	91	74.366	ENSTRUG00000011085	pabpc1l	66	74.366	Takifugu_rubripes
ENSUMAG00000025436	PABPC1L	86	73.077	ENSTNIG00000017903	pabpc1l	65	73.077	Tetraodon_nigroviridis
ENSUMAG00000025436	PABPC1L	94	89.702	ENSTTRG00000007618	PABPC1L	70	89.702	Tursiops_truncatus
ENSUMAG00000025436	PABPC1L	94	96.206	ENSUAMG00000017682	PABPC1L	70	96.206	Ursus_americanus
ENSUMAG00000025436	PABPC1L	94	92.412	ENSVVUG00000018939	PABPC1L	69	92.412	Vulpes_vulpes
ENSUMAG00000025436	PABPC1L	92	74.373	ENSXETG00000022831	pabpc1l	65	74.373	Xenopus_tropicalis
ENSUMAG00000025436	PABPC1L	92	73.538	ENSXCOG00000005459	pabpc1l	95	74.699	Xiphophorus_couchianus
ENSUMAG00000025436	PABPC1L	92	73.538	ENSXMAG00000017135	pabpc1l	73	73.538	Xiphophorus_maculatus