EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000000225 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 248634 bases
Position: chrGeneScaffold_264:475-249108
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000000207	EST1	PF10374.9	4.3e-09	1	1
ENSVPAP00000000207	EST1_DNA_bind	PF10373.9	5.2e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000000225	SMG6-201	4032	-	ENSVPAP00000000207	1344 (aa)	-	UPI00018BD925

Gene Model

Click here to download ENSVPAG00000000225's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000000225's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000000225	SMG6	88	92.593	ENSG00000070366	SMG6	100	95.122	Homo_sapiens
ENSVPAG00000000225	SMG6	70	95.833	ENSAPOG00000019448	smg6	60	95.833	Acanthochromis_polyacanthus
ENSVPAG00000000225	SMG6	88	100.000	ENSAMEG00000007632	SMG6	85	100.000	Ailuropoda_melanoleuca
ENSVPAG00000000225	SMG6	58	95.833	ENSACIG00000012997	smg6	55	95.833	Amphilophus_citrinellus
ENSVPAG00000000225	SMG6	70	95.833	ENSAOCG00000002630	smg6	60	95.833	Amphiprion_ocellaris
ENSVPAG00000000225	SMG6	70	95.833	ENSAPEG00000019101	smg6	60	95.833	Amphiprion_percula
ENSVPAG00000000225	SMG6	70	95.833	ENSATEG00000006483	smg6	62	95.833	Anabas_testudineus
ENSVPAG00000000225	SMG6	84	59.055	ENSACAG00000011783	SMG6	92	60.157	Anolis_carolinensis
ENSVPAG00000000225	SMG6	88	96.296	ENSANAG00000035760	SMG6	85	96.296	Aotus_nancymaae
ENSVPAG00000000225	SMG6	58	95.833	ENSACLG00000005288	smg6	64	95.833	Astatotilapia_calliptera
ENSVPAG00000000225	SMG6	55	88.889	ENSAMXG00000017326	smg6	82	88.889	Astyanax_mexicanus
ENSVPAG00000000225	SMG6	88	100.000	ENSBTAG00000000267	SMG6	85	100.000	Bos_taurus
ENSVPAG00000000225	SMG6	88	96.296	ENSCJAG00000001820	SMG6	85	96.296	Callithrix_jacchus
ENSVPAG00000000225	SMG6	88	100.000	ENSCAFG00000019260	SMG6	85	100.000	Canis_familiaris
ENSVPAG00000000225	SMG6	88	100.000	ENSCAFG00020009770	SMG6	85	100.000	Canis_lupus_dingo
ENSVPAG00000000225	SMG6	88	96.296	ENSCHIG00000021998	SMG6	85	96.296	Capra_hircus
ENSVPAG00000000225	SMG6	88	96.296	ENSTSYG00000003406	SMG6	85	96.296	Carlito_syrichta
ENSVPAG00000000225	SMG6	85	96.296	ENSCAPG00000016197	SMG6	86	96.296	Cavia_aperea
ENSVPAG00000000225	SMG6	88	96.296	ENSCPOG00000014878	SMG6	85	96.296	Cavia_porcellus
ENSVPAG00000000225	SMG6	88	96.296	ENSCCAG00000035801	SMG6	85	96.296	Cebus_capucinus
ENSVPAG00000000225	SMG6	88	92.593	ENSCATG00000031956	SMG6	85	92.593	Cercocebus_atys
ENSVPAG00000000225	SMG6	88	96.296	ENSCLAG00000006748	SMG6	85	96.296	Chinchilla_lanigera
ENSVPAG00000000225	SMG6	88	92.593	ENSCSAG00000013800	SMG6	85	92.593	Chlorocebus_sabaeus
ENSVPAG00000000225	SMG6	88	96.296	ENSCPBG00000020369	SMG6	85	96.296	Chrysemys_picta_bellii
ENSVPAG00000000225	SMG6	85	92.593	ENSCANG00000031764	SMG6	84	92.593	Colobus_angolensis_palliatus
ENSVPAG00000000225	SMG6	51	85.178	ENSCGRG00001019595	Smg6	90	85.178	Cricetulus_griseus_chok1gshd
ENSVPAG00000000225	SMG6	85	92.593	ENSCGRG00000007782	Smg6	85	92.593	Cricetulus_griseus_crigri
ENSVPAG00000000225	SMG6	72	95.833	ENSCSEG00000012757	smg6	65	95.833	Cynoglossus_semilaevis
ENSVPAG00000000225	SMG6	57	95.833	ENSCVAG00000012789	smg6	60	95.833	Cyprinodon_variegatus
ENSVPAG00000000225	SMG6	87	81.481	ENSDARG00000100481	smg6	77	81.481	Danio_rerio
ENSVPAG00000000225	SMG6	88	100.000	ENSDNOG00000048283	SMG6	85	100.000	Dasypus_novemcinctus
ENSVPAG00000000225	SMG6	88	100.000	ENSDORG00000016614	Smg6	85	100.000	Dipodomys_ordii
ENSVPAG00000000225	SMG6	86	82.959	ENSETEG00000016790	SMG6	83	82.959	Echinops_telfairi
ENSVPAG00000000225	SMG6	56	88.889	ENSEBUG00000005059	smg6	52	88.889	Eptatretus_burgeri
ENSVPAG00000000225	SMG6	88	100.000	ENSEASG00005009318	SMG6	84	100.000	Equus_asinus_asinus
ENSVPAG00000000225	SMG6	88	100.000	ENSECAG00000006519	SMG6	84	100.000	Equus_caballus
ENSVPAG00000000225	SMG6	88	100.000	ENSEEUG00000003493	SMG6	85	100.000	Erinaceus_europaeus
ENSVPAG00000000225	SMG6	56	95.238	ENSELUG00000005934	smg6	56	95.238	Esox_lucius
ENSVPAG00000000225	SMG6	88	100.000	ENSFCAG00000028817	SMG6	85	100.000	Felis_catus
ENSVPAG00000000225	SMG6	85	92.593	ENSFALG00000006538	SMG6	84	92.593	Ficedula_albicollis
ENSVPAG00000000225	SMG6	88	92.593	ENSFDAG00000015106	SMG6	85	92.593	Fukomys_damarensis
ENSVPAG00000000225	SMG6	70	91.667	ENSFHEG00000013282	smg6	60	91.667	Fundulus_heteroclitus
ENSVPAG00000000225	SMG6	88	92.593	ENSGALG00000003108	SMG6	83	92.593	Gallus_gallus
ENSVPAG00000000225	SMG6	70	95.833	ENSGAFG00000000379	smg6	60	95.833	Gambusia_affinis
ENSVPAG00000000225	SMG6	78	85.185	ENSGACG00000020521	smg6	83	85.185	Gasterosteus_aculeatus
ENSVPAG00000000225	SMG6	85	96.296	ENSGAGG00000025617	SMG6	84	96.296	Gopherus_agassizii
ENSVPAG00000000225	SMG6	88	92.593	ENSGGOG00000017156	SMG6	85	92.593	Gorilla_gorilla
ENSVPAG00000000225	SMG6	58	95.833	ENSHBUG00000021311	smg6	60	95.833	Haplochromis_burtoni
ENSVPAG00000000225	SMG6	88	96.296	ENSHGLG00000012882	SMG6	85	96.296	Heterocephalus_glaber_female
ENSVPAG00000000225	SMG6	88	96.296	ENSHGLG00100017815	SMG6	85	96.296	Heterocephalus_glaber_male
ENSVPAG00000000225	SMG6	64	74.074	ENSHCOG00000008761	smg6	79	74.074	Hippocampus_comes
ENSVPAG00000000225	SMG6	70	81.481	ENSIPUG00000012493	smg6	62	81.481	Ictalurus_punctatus
ENSVPAG00000000225	SMG6	88	96.296	ENSSTOG00000028127	SMG6	85	96.296	Ictidomys_tridecemlineatus
ENSVPAG00000000225	SMG6	76	81.944	ENSJJAG00000015367	Smg6	89	81.273	Jaculus_jaculus
ENSVPAG00000000225	SMG6	61	88.889	ENSKMAG00000000279	smg6	60	88.889	Kryptolebias_marmoratus
ENSVPAG00000000225	SMG6	70	91.667	ENSLBEG00000002184	smg6	59	91.667	Labrus_bergylta
ENSVPAG00000000225	SMG6	52	71.500	ENSLACG00000000806	-	88	71.500	Latimeria_chalumnae
ENSVPAG00000000225	SMG6	60	96.296	ENSLOCG00000006448	smg6	84	96.296	Lepisosteus_oculatus
ENSVPAG00000000225	SMG6	88	100.000	ENSLAFG00000001261	SMG6	85	100.000	Loxodonta_africana
ENSVPAG00000000225	SMG6	88	92.593	ENSMFAG00000003394	SMG6	85	92.593	Macaca_fascicularis
ENSVPAG00000000225	SMG6	88	92.593	ENSMMUG00000023161	SMG6	85	92.593	Macaca_mulatta
ENSVPAG00000000225	SMG6	88	92.593	ENSMNEG00000044592	SMG6	84	92.593	Macaca_nemestrina
ENSVPAG00000000225	SMG6	86	92.593	ENSMLEG00000029353	SMG6	84	92.593	Mandrillus_leucophaeus
ENSVPAG00000000225	SMG6	70	88.889	ENSMAMG00000020119	smg6	64	88.889	Mastacembelus_armatus
ENSVPAG00000000225	SMG6	58	95.833	ENSMZEG00005024736	smg6	60	95.833	Maylandia_zebra
ENSVPAG00000000225	SMG6	71	74.424	ENSMGAG00000005401	-	91	74.424	Meleagris_gallopavo
ENSVPAG00000000225	SMG6	88	96.296	ENSMICG00000012913	SMG6	85	96.296	Microcebus_murinus
ENSVPAG00000000225	SMG6	88	88.889	ENSMMOG00000010883	smg6	85	88.889	Mola_mola
ENSVPAG00000000225	SMG6	88	96.296	ENSMODG00000010622	SMG6	85	96.296	Monodelphis_domestica
ENSVPAG00000000225	SMG6	70	95.833	ENSMALG00000001106	smg6	60	95.833	Monopterus_albus
ENSVPAG00000000225	SMG6	88	92.593	MGP_CAROLIEiJ_G0016729	Smg6	85	92.593	Mus_caroli
ENSVPAG00000000225	SMG6	88	92.593	ENSMUSG00000038290	Smg6	85	92.593	Mus_musculus
ENSVPAG00000000225	SMG6	88	92.593	MGP_PahariEiJ_G0017866	Smg6	85	92.593	Mus_pahari
ENSVPAG00000000225	SMG6	88	92.593	MGP_SPRETEiJ_G0017572	Smg6	85	92.593	Mus_spretus
ENSVPAG00000000225	SMG6	88	100.000	ENSMPUG00000013046	SMG6	85	100.000	Mustela_putorius_furo
ENSVPAG00000000225	SMG6	88	100.000	ENSMLUG00000005739	SMG6	85	100.000	Myotis_lucifugus
ENSVPAG00000000225	SMG6	85	92.593	ENSNGAG00000007287	Smg6	84	92.593	Nannospalax_galili
ENSVPAG00000000225	SMG6	70	95.833	ENSNBRG00000009511	smg6	65	95.833	Neolamprologus_brichardi
ENSVPAG00000000225	SMG6	86	92.593	ENSNLEG00000017171	SMG6	84	92.593	Nomascus_leucogenys
ENSVPAG00000000225	SMG6	85	96.296	ENSMEUG00000015804	SMG6	84	96.296	Notamacropus_eugenii
ENSVPAG00000000225	SMG6	83	97.030	ENSODEG00000008038	SMG6	84	97.030	Octodon_degus
ENSVPAG00000000225	SMG6	88	95.833	ENSONIG00000005594	smg6	84	85.185	Oreochromis_niloticus
ENSVPAG00000000225	SMG6	88	96.296	ENSOCUG00000013018	SMG6	85	96.296	Oryctolagus_cuniculus
ENSVPAG00000000225	SMG6	70	88.889	ENSORLG00000003317	smg6	60	88.889	Oryzias_latipes
ENSVPAG00000000225	SMG6	71	85.185	ENSORLG00020015343	smg6	60	85.185	Oryzias_latipes_hni
ENSVPAG00000000225	SMG6	71	88.889	ENSORLG00015020454	smg6	60	88.889	Oryzias_latipes_hsok
ENSVPAG00000000225	SMG6	70	88.889	ENSOMEG00000010838	smg6	61	88.889	Oryzias_melastigma
ENSVPAG00000000225	SMG6	88	96.296	ENSOGAG00000004483	SMG6	85	96.296	Otolemur_garnettii
ENSVPAG00000000225	SMG6	88	100.000	ENSOARG00000015076	SMG6	85	100.000	Ovis_aries
ENSVPAG00000000225	SMG6	88	92.593	ENSPPAG00000043296	SMG6	85	92.593	Pan_paniscus
ENSVPAG00000000225	SMG6	88	100.000	ENSPPRG00000014581	SMG6	85	100.000	Panthera_pardus
ENSVPAG00000000225	SMG6	85	100.000	ENSPTIG00000008925	SMG6	83	100.000	Panthera_tigris_altaica
ENSVPAG00000000225	SMG6	88	92.593	ENSPTRG00000008544	SMG6	85	92.593	Pan_troglodytes
ENSVPAG00000000225	SMG6	88	92.593	ENSPANG00000024588	SMG6	85	92.593	Papio_anubis
ENSVPAG00000000225	SMG6	84	70.462	ENSPSIG00000006660	SMG6	88	70.561	Pelodiscus_sinensis
ENSVPAG00000000225	SMG6	87	91.667	ENSPMGG00000000844	smg6	84	91.667	Periophthalmus_magnuspinnatus
ENSVPAG00000000225	SMG6	88	92.593	ENSPEMG00000020707	Smg6	85	92.593	Peromyscus_maniculatus_bairdii
ENSVPAG00000000225	SMG6	87	95.833	ENSPFOG00000012035	smg6	85	95.833	Poecilia_formosa
ENSVPAG00000000225	SMG6	63	95.833	ENSPLAG00000017660	smg6	61	95.833	Poecilia_latipinna
ENSVPAG00000000225	SMG6	63	95.833	ENSPMEG00000000258	smg6	61	95.833	Poecilia_mexicana
ENSVPAG00000000225	SMG6	69	95.833	ENSPREG00000010066	smg6	60	95.833	Poecilia_reticulata
ENSVPAG00000000225	SMG6	88	92.593	ENSPPYG00000007790	SMG6	85	92.593	Pongo_abelii
ENSVPAG00000000225	SMG6	88	100.000	ENSPCAG00000000552	SMG6	85	100.000	Procavia_capensis
ENSVPAG00000000225	SMG6	88	96.296	ENSPCOG00000020925	SMG6	85	96.296	Propithecus_coquereli
ENSVPAG00000000225	SMG6	69	100.000	ENSPVAG00000002159	SMG6	66	100.000	Pteropus_vampyrus
ENSVPAG00000000225	SMG6	58	95.833	ENSPNYG00000024151	smg6	65	95.833	Pundamilia_nyererei
ENSVPAG00000000225	SMG6	74	81.481	ENSPNAG00000015480	smg6	83	81.481	Pygocentrus_nattereri
ENSVPAG00000000225	SMG6	88	92.593	ENSRNOG00000003041	Smg6	85	92.593	Rattus_norvegicus
ENSVPAG00000000225	SMG6	88	92.593	ENSRBIG00000024746	SMG6	85	92.593	Rhinopithecus_bieti
ENSVPAG00000000225	SMG6	88	92.593	ENSRROG00000030423	SMG6	85	92.593	Rhinopithecus_roxellana
ENSVPAG00000000225	SMG6	88	96.296	ENSSBOG00000022518	SMG6	75	96.296	Saimiri_boliviensis_boliviensis
ENSVPAG00000000225	SMG6	86	96.296	ENSSHAG00000010045	SMG6	83	96.296	Sarcophilus_harrisii
ENSVPAG00000000225	SMG6	58	96.000	ENSSFOG00015005436	smg6	58	96.000	Scleropages_formosus
ENSVPAG00000000225	SMG6	70	87.500	ENSSMAG00000019777	smg6	59	87.500	Scophthalmus_maximus
ENSVPAG00000000225	SMG6	76	95.833	ENSSDUG00000016412	smg6	65	95.833	Seriola_dumerili
ENSVPAG00000000225	SMG6	76	95.833	ENSSLDG00000020747	smg6	70	95.833	Seriola_lalandi_dorsalis
ENSVPAG00000000225	SMG6	88	92.308	ENSSPUG00000007152	SMG6	84	92.308	Sphenodon_punctatus
ENSVPAG00000000225	SMG6	58	95.833	ENSSPAG00000015633	smg6	60	95.833	Stegastes_partitus
ENSVPAG00000000225	SMG6	88	100.000	ENSSSCG00000017826	SMG6	85	100.000	Sus_scrofa
ENSVPAG00000000225	SMG6	88	92.593	ENSTGUG00000005836	SMG6	85	92.593	Taeniopygia_guttata
ENSVPAG00000000225	SMG6	75	95.833	ENSTRUG00000000358	smg6	70	95.833	Takifugu_rubripes
ENSVPAG00000000225	SMG6	88	88.889	ENSTNIG00000016164	smg6	84	88.889	Tetraodon_nigroviridis
ENSVPAG00000000225	SMG6	88	96.296	ENSTBEG00000011424	SMG6	85	96.296	Tupaia_belangeri
ENSVPAG00000000225	SMG6	77	96.296	ENSTTRG00000001175	SMG6	75	96.296	Tursiops_truncatus
ENSVPAG00000000225	SMG6	88	100.000	ENSUAMG00000025152	SMG6	85	100.000	Ursus_americanus
ENSVPAG00000000225	SMG6	85	100.000	ENSUMAG00000009306	SMG6	84	100.000	Ursus_maritimus
ENSVPAG00000000225	SMG6	88	100.000	ENSVVUG00000021727	SMG6	85	100.000	Vulpes_vulpes
ENSVPAG00000000225	SMG6	86	81.481	ENSXETG00000023799	SMG6	84	81.481	Xenopus_tropicalis
ENSVPAG00000000225	SMG6	70	95.833	ENSXCOG00000009867	smg6	60	95.833	Xiphophorus_couchianus
ENSVPAG00000000225	SMG6	70	95.833	ENSXMAG00000010321	smg6	60	95.833	Xiphophorus_maculatus