EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000000263 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Plus strand
Length: 363509 bases
Position: chrGeneScaffold_1844:465854-829362
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000000242	CMS1	PF14617.6	2.9e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000000263	CMSS1-201	840	-	ENSVPAP00000000242	279 (aa)	-	UPI00018BE0BA

Gene Model

Click here to download ENSVPAG00000000263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000000263's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000000263	CMSS1	100	67.384	ENSG00000184220	CMSS1	97	73.394	Homo_sapiens
ENSVPAG00000000263	CMSS1	57	63.750	ENSAPOG00000010604	cmss1	65	63.750	Acanthochromis_polyacanthus
ENSVPAG00000000263	CMSS1	82	76.419	ENSAMEG00000004092	CMSS1	88	76.419	Ailuropoda_melanoleuca
ENSVPAG00000000263	CMSS1	50	58.571	ENSACIG00000021854	cmss1	57	58.571	Amphilophus_citrinellus
ENSVPAG00000000263	CMSS1	57	63.750	ENSAOCG00000013361	cmss1	55	63.750	Amphiprion_ocellaris
ENSVPAG00000000263	CMSS1	57	63.750	ENSAPEG00000005829	cmss1	55	63.750	Amphiprion_percula
ENSVPAG00000000263	CMSS1	57	63.125	ENSATEG00000008209	cmss1	100	41.522	Anabas_testudineus
ENSVPAG00000000263	CMSS1	57	71.875	ENSAPLG00000010542	CMSS1	99	55.459	Anas_platyrhynchos
ENSVPAG00000000263	CMSS1	57	71.875	ENSACAG00000011065	CMSS1	59	71.875	Anolis_carolinensis
ENSVPAG00000000263	CMSS1	100	66.786	ENSANAG00000023565	CMSS1	100	66.786	Aotus_nancymaae
ENSVPAG00000000263	CMSS1	57	60.000	ENSACLG00000027294	cmss1	55	60.000	Astatotilapia_calliptera
ENSVPAG00000000263	CMSS1	57	56.250	ENSAMXG00000002046	cmss1	54	56.250	Astyanax_mexicanus
ENSVPAG00000000263	CMSS1	100	68.817	ENSBTAG00000013663	CMSS1	100	68.817	Bos_taurus
ENSVPAG00000000263	CMSS1	100	66.786	ENSCJAG00000000610	CMSS1	100	66.786	Callithrix_jacchus
ENSVPAG00000000263	CMSS1	82	77.632	ENSCAFG00000009230	CMSS1	83	77.632	Canis_familiaris
ENSVPAG00000000263	CMSS1	82	77.632	ENSCAFG00020009464	-	83	77.632	Canis_lupus_dingo
ENSVPAG00000000263	CMSS1	57	88.750	ENSCAFG00020024156	-	71	69.469	Canis_lupus_dingo
ENSVPAG00000000263	CMSS1	82	75.877	ENSCHIG00000013003	CMSS1	83	75.877	Capra_hircus
ENSVPAG00000000263	CMSS1	82	73.684	ENSTSYG00000009266	CMSS1	88	73.684	Carlito_syrichta
ENSVPAG00000000263	CMSS1	80	62.445	ENSCAPG00000013584	CMSS1	100	62.445	Cavia_aperea
ENSVPAG00000000263	CMSS1	100	67.025	ENSCPOG00000014680	CMSS1	100	67.025	Cavia_porcellus
ENSVPAG00000000263	CMSS1	100	67.500	ENSCCAG00000034685	CMSS1	100	67.500	Cebus_capucinus
ENSVPAG00000000263	CMSS1	100	67.742	ENSCATG00000031980	CMSS1	100	67.742	Cercocebus_atys
ENSVPAG00000000263	CMSS1	82	75.000	ENSCLAG00000011241	CMSS1	98	75.000	Chinchilla_lanigera
ENSVPAG00000000263	CMSS1	82	75.439	ENSCSAG00000006024	CMSS1	93	75.439	Chlorocebus_sabaeus
ENSVPAG00000000263	CMSS1	50	72.857	ENSCHOG00000012098	CMSS1	100	48.387	Choloepus_hoffmanni
ENSVPAG00000000263	CMSS1	57	44.444	ENSCING00000014848	-	87	44.444	Ciona_intestinalis
ENSVPAG00000000263	CMSS1	100	67.384	ENSCANG00000031337	CMSS1	100	67.384	Colobus_angolensis_palliatus
ENSVPAG00000000263	CMSS1	100	63.082	ENSCGRG00001014305	Cmss1	100	63.082	Cricetulus_griseus_chok1gshd
ENSVPAG00000000263	CMSS1	82	69.737	ENSCGRG00000006722	Cmss1	89	69.737	Cricetulus_griseus_crigri
ENSVPAG00000000263	CMSS1	57	61.250	ENSCSEG00000004958	cmss1	54	61.250	Cynoglossus_semilaevis
ENSVPAG00000000263	CMSS1	57	61.250	ENSCVAG00000005039	cmss1	56	61.250	Cyprinodon_variegatus
ENSVPAG00000000263	CMSS1	57	54.375	ENSDARG00000112579	cmss1	55	54.375	Danio_rerio
ENSVPAG00000000263	CMSS1	82	73.246	ENSDNOG00000040418	CMSS1	83	73.246	Dasypus_novemcinctus
ENSVPAG00000000263	CMSS1	100	68.459	ENSDORG00000010461	Cmss1	100	68.459	Dipodomys_ordii
ENSVPAG00000000263	CMSS1	82	75.877	ENSEASG00005010966	CMSS1	99	75.342	Equus_asinus_asinus
ENSVPAG00000000263	CMSS1	82	75.439	ENSECAG00000015662	CMSS1	99	74.779	Equus_caballus
ENSVPAG00000000263	CMSS1	79	88.333	ENSEEUG00000007624	-	100	54.839	Erinaceus_europaeus
ENSVPAG00000000263	CMSS1	57	61.875	ENSELUG00000019459	cmss1	53	61.875	Esox_lucius
ENSVPAG00000000263	CMSS1	100	70.251	ENSFCAG00000044577	CMSS1	100	70.251	Felis_catus
ENSVPAG00000000263	CMSS1	57	67.500	ENSFALG00000005816	CMSS1	96	52.193	Ficedula_albicollis
ENSVPAG00000000263	CMSS1	82	75.000	ENSFDAG00000012577	CMSS1	100	75.000	Fukomys_damarensis
ENSVPAG00000000263	CMSS1	57	62.500	ENSFHEG00000012008	cmss1	66	62.500	Fundulus_heteroclitus
ENSVPAG00000000263	CMSS1	57	60.000	ENSGMOG00000016729	cmss1	57	60.000	Gadus_morhua
ENSVPAG00000000263	CMSS1	57	71.250	ENSGALG00000015267	CMSS1	87	55.263	Gallus_gallus
ENSVPAG00000000263	CMSS1	57	61.250	ENSGAFG00000021217	cmss1	61	61.250	Gambusia_affinis
ENSVPAG00000000263	CMSS1	57	55.000	ENSGACG00000002798	cmss1	100	38.351	Gasterosteus_aculeatus
ENSVPAG00000000263	CMSS1	57	73.750	ENSGAGG00000019861	CMSS1	89	57.018	Gopherus_agassizii
ENSVPAG00000000263	CMSS1	82	75.439	ENSGGOG00000014125	CMSS1	87	75.439	Gorilla_gorilla
ENSVPAG00000000263	CMSS1	57	60.000	ENSHBUG00000008431	cmss1	57	60.000	Haplochromis_burtoni
ENSVPAG00000000263	CMSS1	81	74.890	ENSHGLG00000019481	CMSS1	93	74.890	Heterocephalus_glaber_female
ENSVPAG00000000263	CMSS1	81	74.890	ENSHGLG00100010314	CMSS1	91	74.890	Heterocephalus_glaber_male
ENSVPAG00000000263	CMSS1	57	65.000	ENSHCOG00000003222	cmss1	100	42.034	Hippocampus_comes
ENSVPAG00000000263	CMSS1	57	56.250	ENSIPUG00000011591	cmss1	55	56.250	Ictalurus_punctatus
ENSVPAG00000000263	CMSS1	100	69.176	ENSSTOG00000019366	CMSS1	100	69.176	Ictidomys_tridecemlineatus
ENSVPAG00000000263	CMSS1	100	64.516	ENSJJAG00000014894	Cmss1	100	64.516	Jaculus_jaculus
ENSVPAG00000000263	CMSS1	50	59.286	ENSKMAG00000002390	cmss1	60	59.286	Kryptolebias_marmoratus
ENSVPAG00000000263	CMSS1	55	57.419	ENSLBEG00000006298	cmss1	64	57.419	Labrus_bergylta
ENSVPAG00000000263	CMSS1	57	70.625	ENSLACG00000009293	CMSS1	100	53.478	Latimeria_chalumnae
ENSVPAG00000000263	CMSS1	57	59.375	ENSLOCG00000009391	cmss1	100	39.929	Lepisosteus_oculatus
ENSVPAG00000000263	CMSS1	82	73.246	ENSLAFG00000017509	CMSS1	100	73.246	Loxodonta_africana
ENSVPAG00000000263	CMSS1	100	68.459	ENSMFAG00000045006	CMSS1	100	68.459	Macaca_fascicularis
ENSVPAG00000000263	CMSS1	100	68.100	ENSMMUG00000002939	CMSS1	97	74.312	Macaca_mulatta
ENSVPAG00000000263	CMSS1	100	68.100	ENSMNEG00000031315	CMSS1	100	68.100	Macaca_nemestrina
ENSVPAG00000000263	CMSS1	100	67.742	ENSMLEG00000033660	CMSS1	100	67.742	Mandrillus_leucophaeus
ENSVPAG00000000263	CMSS1	57	61.875	ENSMAMG00000017176	cmss1	55	61.875	Mastacembelus_armatus
ENSVPAG00000000263	CMSS1	57	60.000	ENSMZEG00005021886	cmss1	55	60.000	Maylandia_zebra
ENSVPAG00000000263	CMSS1	57	71.250	ENSMGAG00000014360	CMSS1	100	54.386	Meleagris_gallopavo
ENSVPAG00000000263	CMSS1	66	84.615	ENSMAUG00000020609	Cmss1	86	84.615	Mesocricetus_auratus
ENSVPAG00000000263	CMSS1	100	69.892	ENSMICG00000048977	CMSS1	100	69.892	Microcebus_murinus
ENSVPAG00000000263	CMSS1	100	63.799	ENSMOCG00000021937	Cmss1	100	63.799	Microtus_ochrogaster
ENSVPAG00000000263	CMSS1	57	60.625	ENSMMOG00000019794	cmss1	66	60.625	Mola_mola
ENSVPAG00000000263	CMSS1	82	64.912	ENSMODG00000002275	CMSS1	86	64.912	Monodelphis_domestica
ENSVPAG00000000263	CMSS1	57	63.125	ENSMALG00000004250	cmss1	55	63.125	Monopterus_albus
ENSVPAG00000000263	CMSS1	100	62.857	MGP_CAROLIEiJ_G0020824	Cmss1	100	62.857	Mus_caroli
ENSVPAG00000000263	CMSS1	100	63.571	ENSMUSG00000022748	Cmss1	100	63.571	Mus_musculus
ENSVPAG00000000263	CMSS1	100	63.214	MGP_PahariEiJ_G0016524	Cmss1	100	63.214	Mus_pahari
ENSVPAG00000000263	CMSS1	100	63.214	MGP_SPRETEiJ_G0021724	Cmss1	100	63.214	Mus_spretus
ENSVPAG00000000263	CMSS1	81	77.093	ENSMPUG00000011324	CMSS1	88	77.093	Mustela_putorius_furo
ENSVPAG00000000263	CMSS1	82	75.217	ENSMLUG00000001131	CMSS1	87	75.217	Myotis_lucifugus
ENSVPAG00000000263	CMSS1	100	64.875	ENSNGAG00000020316	Cmss1	100	64.875	Nannospalax_galili
ENSVPAG00000000263	CMSS1	57	59.375	ENSNBRG00000003095	cmss1	55	59.375	Neolamprologus_brichardi
ENSVPAG00000000263	CMSS1	100	69.176	ENSNLEG00000034172	CMSS1	100	69.176	Nomascus_leucogenys
ENSVPAG00000000263	CMSS1	57	65.000	ENSMEUG00000014505	CMSS1	100	52.193	Notamacropus_eugenii
ENSVPAG00000000263	CMSS1	100	68.459	ENSOPRG00000002986	CMSS1	100	68.459	Ochotona_princeps
ENSVPAG00000000263	CMSS1	57	80.625	ENSODEG00000009446	-	100	55.914	Octodon_degus
ENSVPAG00000000263	CMSS1	100	65.591	ENSODEG00000003558	-	100	65.591	Octodon_degus
ENSVPAG00000000263	CMSS1	100	58.781	ENSODEG00000001853	-	100	58.781	Octodon_degus
ENSVPAG00000000263	CMSS1	100	65.950	ENSODEG00000005226	-	100	65.950	Octodon_degus
ENSVPAG00000000263	CMSS1	57	60.000	ENSONIG00000006678	cmss1	61	60.000	Oreochromis_niloticus
ENSVPAG00000000263	CMSS1	82	60.965	ENSOANG00000007529	CMSS1	99	59.914	Ornithorhynchus_anatinus
ENSVPAG00000000263	CMSS1	82	74.123	ENSOCUG00000025366	CMSS1	83	74.123	Oryctolagus_cuniculus
ENSVPAG00000000263	CMSS1	57	63.750	ENSORLG00000020340	cmss1	100	43.860	Oryzias_latipes
ENSVPAG00000000263	CMSS1	57	55.625	ENSORLG00020012235	cmss1	67	55.625	Oryzias_latipes_hni
ENSVPAG00000000263	CMSS1	57	55.625	ENSORLG00015015551	cmss1	59	55.625	Oryzias_latipes_hsok
ENSVPAG00000000263	CMSS1	57	64.375	ENSOMEG00000012555	cmss1	55	64.375	Oryzias_melastigma
ENSVPAG00000000263	CMSS1	82	75.877	ENSOGAG00000002045	CMSS1	100	75.877	Otolemur_garnettii
ENSVPAG00000000263	CMSS1	82	75.546	ENSOARG00000017899	CMSS1	79	75.546	Ovis_aries
ENSVPAG00000000263	CMSS1	82	75.439	ENSPPAG00000038515	CMSS1	84	75.439	Pan_paniscus
ENSVPAG00000000263	CMSS1	100	69.892	ENSPPRG00000016767	CMSS1	100	69.892	Panthera_pardus
ENSVPAG00000000263	CMSS1	100	69.534	ENSPTIG00000018274	CMSS1	100	69.534	Panthera_tigris_altaica
ENSVPAG00000000263	CMSS1	100	67.742	ENSPTRG00000015157	CMSS1	93	75.000	Pan_troglodytes
ENSVPAG00000000263	CMSS1	82	75.439	ENSPANG00000019980	CMSS1	91	75.439	Papio_anubis
ENSVPAG00000000263	CMSS1	57	64.375	ENSPKIG00000012609	cmss1	59	64.375	Paramormyrops_kingsleyae
ENSVPAG00000000263	CMSS1	57	75.625	ENSPSIG00000003849	CMSS1	99	58.333	Pelodiscus_sinensis
ENSVPAG00000000263	CMSS1	57	62.112	ENSPMGG00000010286	cmss1	69	62.112	Periophthalmus_magnuspinnatus
ENSVPAG00000000263	CMSS1	100	64.286	ENSPEMG00000016384	Cmss1	100	64.286	Peromyscus_maniculatus_bairdii
ENSVPAG00000000263	CMSS1	57	53.125	ENSPMAG00000001146	cmss1	78	53.125	Petromyzon_marinus
ENSVPAG00000000263	CMSS1	57	81.875	ENSPCIG00000015656	CMSS1	86	63.596	Phascolarctos_cinereus
ENSVPAG00000000263	CMSS1	57	61.250	ENSPFOG00000016849	cmss1	56	61.250	Poecilia_formosa
ENSVPAG00000000263	CMSS1	57	60.625	ENSPLAG00000008323	cmss1	56	60.625	Poecilia_latipinna
ENSVPAG00000000263	CMSS1	57	61.250	ENSPMEG00000021020	cmss1	56	61.250	Poecilia_mexicana
ENSVPAG00000000263	CMSS1	57	60.625	ENSPREG00000007618	cmss1	54	60.625	Poecilia_reticulata
ENSVPAG00000000263	CMSS1	100	67.742	ENSPPYG00000013606	CMSS1	100	67.742	Pongo_abelii
ENSVPAG00000000263	CMSS1	100	69.892	ENSPCOG00000020035	CMSS1	100	69.892	Propithecus_coquereli
ENSVPAG00000000263	CMSS1	100	56.272	ENSPVAG00000017031	CMSS1	100	56.272	Pteropus_vampyrus
ENSVPAG00000000263	CMSS1	57	56.875	ENSPNAG00000007912	cmss1	100	38.435	Pygocentrus_nattereri
ENSVPAG00000000263	CMSS1	57	90.625	ENSRNOG00000027888	Cmss1	89	68.559	Rattus_norvegicus
ENSVPAG00000000263	CMSS1	100	68.100	ENSRBIG00000037931	CMSS1	100	68.100	Rhinopithecus_bieti
ENSVPAG00000000263	CMSS1	100	68.100	ENSRROG00000042910	CMSS1	100	68.100	Rhinopithecus_roxellana
ENSVPAG00000000263	CMSS1	82	74.561	ENSSBOG00000030980	CMSS1	87	74.561	Saimiri_boliviensis_boliviensis
ENSVPAG00000000263	CMSS1	57	81.875	ENSSHAG00000009321	CMSS1	90	63.158	Sarcophilus_harrisii
ENSVPAG00000000263	CMSS1	57	63.750	ENSSFOG00015001509	cmss1	100	42.414	Scleropages_formosus
ENSVPAG00000000263	CMSS1	57	61.875	ENSSMAG00000001653	cmss1	55	61.875	Scophthalmus_maximus
ENSVPAG00000000263	CMSS1	57	62.500	ENSSDUG00000007719	cmss1	100	42.361	Seriola_dumerili
ENSVPAG00000000263	CMSS1	57	63.125	ENSSLDG00000012300	cmss1	54	63.125	Seriola_lalandi_dorsalis
ENSVPAG00000000263	CMSS1	100	53.214	ENSSARG00000003584	CMSS1	100	53.214	Sorex_araneus
ENSVPAG00000000263	CMSS1	57	74.375	ENSSPUG00000003865	CMSS1	100	57.080	Sphenodon_punctatus
ENSVPAG00000000263	CMSS1	57	63.125	ENSSPAG00000019182	cmss1	50	63.125	Stegastes_partitus
ENSVPAG00000000263	CMSS1	100	69.892	ENSSSCG00000011970	CMSS1	100	69.892	Sus_scrofa
ENSVPAG00000000263	CMSS1	57	67.500	ENSTGUG00000013635	CMSS1	99	52.193	Taeniopygia_guttata
ENSVPAG00000000263	CMSS1	57	60.625	ENSTRUG00000015265	cmss1	57	60.625	Takifugu_rubripes
ENSVPAG00000000263	CMSS1	57	53.750	ENSTNIG00000002880	cmss1	58	53.750	Tetraodon_nigroviridis
ENSVPAG00000000263	CMSS1	100	69.176	ENSTTRG00000001562	CMSS1	100	69.176	Tursiops_truncatus
ENSVPAG00000000263	CMSS1	82	77.193	ENSUAMG00000024209	CMSS1	100	76.682	Ursus_americanus
ENSVPAG00000000263	CMSS1	82	76.316	ENSUMAG00000001983	CMSS1	88	76.316	Ursus_maritimus
ENSVPAG00000000263	CMSS1	82	77.193	ENSVVUG00000021647	-	93	77.193	Vulpes_vulpes
ENSVPAG00000000263	CMSS1	81	74.779	ENSVVUG00000007776	-	89	74.779	Vulpes_vulpes
ENSVPAG00000000263	CMSS1	57	67.500	ENSXETG00000011858	cmss1	100	46.643	Xenopus_tropicalis
ENSVPAG00000000263	CMSS1	57	61.250	ENSXCOG00000018724	cmss1	55	61.250	Xiphophorus_couchianus
ENSVPAG00000000263	CMSS1	57	61.250	ENSXMAG00000011243	cmss1	60	61.250	Xiphophorus_maculatus