EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVPAG00000001063 (Gene tree)
Gene ID: -
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrscaffold_4224:39290-40438
Accession: 102526997
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000000979	RRM_5	PF13893.6	1.4e-11	1	2
ENSVPAP00000000979	RRM_5	PF13893.6	1.4e-11	2	2
ENSVPAP00000000979	RRM_1	PF00076.22	3.1e-79	1	4
ENSVPAP00000000979	RRM_1	PF00076.22	3.1e-79	2	4
ENSVPAP00000000979	RRM_1	PF00076.22	3.1e-79	3	4
ENSVPAP00000000979	RRM_1	PF00076.22	3.1e-79	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000001063	PABPC5-201	1149	-	ENSVPAP00000000979	382 (aa)	XP_006214448	UPI00018BCBE2

Gene Model

Click here to download ENSVPAG00000001063's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000001063's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVPAG00000001063	PABPC5	63	33.784	ENSVPAG00000000336	CELF1	50	33.784
ENSVPAG00000001063	PABPC5	94	35.802	ENSVPAG00000005109	ELAVL2	83	35.802
ENSVPAG00000001063	PABPC5	95	64.918	ENSVPAG00000003865	PABPC1	58	64.918

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000001063	PABPC5	99	97.375	ENSG00000174740	PABPC5	99	97.375	Homo_sapiens
ENSVPAG00000001063	PABPC5	99	97.638	ENSAMEG00000020114	PABPC5	100	97.638	Ailuropoda_melanoleuca
ENSVPAG00000001063	PABPC5	99	97.375	ENSANAG00000005063	PABPC5	99	97.375	Aotus_nancymaae
ENSVPAG00000001063	PABPC5	100	97.120	ENSBTAG00000019942	PABPC5	100	97.120	Bos_taurus
ENSVPAG00000001063	PABPC5	99	96.850	ENSCJAG00000003665	PABPC5	99	96.850	Callithrix_jacchus
ENSVPAG00000001063	PABPC5	100	97.120	ENSCAFG00000017452	PABPC5	100	97.120	Canis_familiaris
ENSVPAG00000001063	PABPC5	100	97.120	ENSCHIG00000019004	PABPC5	100	97.120	Capra_hircus
ENSVPAG00000001063	PABPC5	100	97.120	ENSTSYG00000036351	PABPC5	100	97.120	Carlito_syrichta
ENSVPAG00000001063	PABPC5	99	86.911	ENSCAPG00000010714	PABPC5	100	86.911	Cavia_aperea
ENSVPAG00000001063	PABPC5	100	93.717	ENSCPOG00000002555	PABPC5	100	93.717	Cavia_porcellus
ENSVPAG00000001063	PABPC5	99	97.375	ENSCCAG00000032154	PABPC5	99	97.375	Cebus_capucinus
ENSVPAG00000001063	PABPC5	99	97.113	ENSCATG00000043083	PABPC5	99	97.113	Cercocebus_atys
ENSVPAG00000001063	PABPC5	100	94.764	ENSCLAG00000000647	PABPC5	100	94.764	Chinchilla_lanigera
ENSVPAG00000001063	PABPC5	99	97.113	ENSCSAG00000000065	PABPC5	99	97.113	Chlorocebus_sabaeus
ENSVPAG00000001063	PABPC5	99	97.113	ENSCANG00000011473	PABPC5	99	97.113	Colobus_angolensis_palliatus
ENSVPAG00000001063	PABPC5	100	93.194	ENSCGRG00000018699	Pabpc5	100	93.194	Cricetulus_griseus_crigri
ENSVPAG00000001063	PABPC5	100	78.068	ENSETEG00000011832	PABPC5	100	78.068	Echinops_telfairi
ENSVPAG00000001063	PABPC5	100	97.906	ENSEASG00005014396	PABPC5	100	97.906	Equus_asinus_asinus
ENSVPAG00000001063	PABPC5	100	97.906	ENSECAG00000003452	PABPC5	100	97.906	Equus_caballus
ENSVPAG00000001063	PABPC5	100	97.382	ENSFCAG00000004998	PABPC5	100	97.382	Felis_catus
ENSVPAG00000001063	PABPC5	100	95.812	ENSFDAG00000000126	PABPC5	100	95.812	Fukomys_damarensis
ENSVPAG00000001063	PABPC5	99	97.375	ENSGGOG00000007622	PABPC5	99	97.375	Gorilla_gorilla
ENSVPAG00000001063	PABPC5	95	95.413	ENSJJAG00000011960	Pabpc5	100	95.413	Jaculus_jaculus
ENSVPAG00000001063	PABPC5	99	97.113	ENSMFAG00000024561	PABPC5	99	97.113	Macaca_fascicularis
ENSVPAG00000001063	PABPC5	99	97.113	ENSMMUG00000011562	PABPC5	99	97.113	Macaca_mulatta
ENSVPAG00000001063	PABPC5	99	97.113	ENSMNEG00000037604	PABPC5	99	97.113	Macaca_nemestrina
ENSVPAG00000001063	PABPC5	99	97.113	ENSMLEG00000028318	PABPC5	99	97.113	Mandrillus_leucophaeus
ENSVPAG00000001063	PABPC5	100	95.812	ENSMICG00000041706	PABPC5	100	95.812	Microcebus_murinus
ENSVPAG00000001063	PABPC5	100	94.764	ENSMOCG00000001554	Pabpc5	100	94.764	Microtus_ochrogaster
ENSVPAG00000001063	PABPC5	99	93.421	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.421	Mus_caroli
ENSVPAG00000001063	PABPC5	99	93.947	ENSMUSG00000034732	Pabpc5	99	93.947	Mus_musculus
ENSVPAG00000001063	PABPC5	100	94.241	MGP_PahariEiJ_G0031908	Pabpc5	100	94.241	Mus_pahari
ENSVPAG00000001063	PABPC5	99	93.947	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.947	Mus_spretus
ENSVPAG00000001063	PABPC5	100	96.859	ENSMPUG00000018465	PABPC5	100	96.859	Mustela_putorius_furo
ENSVPAG00000001063	PABPC5	100	97.120	ENSMLUG00000008244	PABPC5	100	97.120	Myotis_lucifugus
ENSVPAG00000001063	PABPC5	95	94.495	ENSNGAG00000004371	Pabpc5	100	94.495	Nannospalax_galili
ENSVPAG00000001063	PABPC5	99	97.375	ENSNLEG00000035086	PABPC5	99	97.375	Nomascus_leucogenys
ENSVPAG00000001063	PABPC5	98	97.738	ENSOPRG00000000856	PABPC5	100	97.738	Ochotona_princeps
ENSVPAG00000001063	PABPC5	100	96.859	ENSOCUG00000010919	PABPC5	100	96.859	Oryctolagus_cuniculus
ENSVPAG00000001063	PABPC5	100	96.335	ENSOGAG00000006882	PABPC5	100	96.335	Otolemur_garnettii
ENSVPAG00000001063	PABPC5	100	97.382	ENSOARG00000010260	PABPC5	100	97.382	Ovis_aries
ENSVPAG00000001063	PABPC5	99	97.113	ENSPPAG00000007378	PABPC5	99	97.113	Pan_paniscus
ENSVPAG00000001063	PABPC5	100	97.382	ENSPPRG00000010742	PABPC5	100	97.382	Panthera_pardus
ENSVPAG00000001063	PABPC5	100	97.382	ENSPTIG00000001480	PABPC5	100	97.382	Panthera_tigris_altaica
ENSVPAG00000001063	PABPC5	99	97.375	ENSPTRG00000022078	PABPC5	99	97.375	Pan_troglodytes
ENSVPAG00000001063	PABPC5	99	97.113	ENSPANG00000018282	PABPC5	99	97.113	Papio_anubis
ENSVPAG00000001063	PABPC5	100	94.503	ENSPEMG00000000171	Pabpc5	100	94.503	Peromyscus_maniculatus_bairdii
ENSVPAG00000001063	PABPC5	99	97.375	ENSPPYG00000020526	PABPC5	99	97.375	Pongo_abelii
ENSVPAG00000001063	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSVPAG00000001063	PABPC5	100	96.597	ENSPCOG00000000676	PABPC5	100	96.597	Propithecus_coquereli
ENSVPAG00000001063	PABPC5	100	98.168	ENSPVAG00000006465	PABPC5	100	98.168	Pteropus_vampyrus
ENSVPAG00000001063	PABPC5	100	94.241	ENSRNOG00000003354	Pabpc5	100	94.241	Rattus_norvegicus
ENSVPAG00000001063	PABPC5	99	97.113	ENSRBIG00000011760	PABPC5	99	97.113	Rhinopithecus_bieti
ENSVPAG00000001063	PABPC5	99	97.113	ENSRROG00000036708	PABPC5	99	97.113	Rhinopithecus_roxellana
ENSVPAG00000001063	PABPC5	99	97.375	ENSSBOG00000008658	PABPC5	99	97.375	Saimiri_boliviensis_boliviensis
ENSVPAG00000001063	PABPC5	100	94.764	ENSSARG00000014012	PABPC5	100	94.764	Sorex_araneus
ENSVPAG00000001063	PABPC5	100	97.644	ENSSSCG00000040194	PABPC5	100	97.644	Sus_scrofa
ENSVPAG00000001063	PABPC5	100	97.382	ENSTBEG00000016482	PABPC5	100	97.382	Tupaia_belangeri
ENSVPAG00000001063	PABPC5	100	97.120	ENSUAMG00000013627	PABPC5	100	97.120	Ursus_americanus
ENSVPAG00000001063	PABPC5	100	96.859	ENSUMAG00000023934	PABPC5	100	96.859	Ursus_maritimus
ENSVPAG00000001063	PABPC5	100	97.382	ENSVVUG00000013172	PABPC5	100	97.382	Vulpes_vulpes