EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000001343 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 6254 bases
Position: chrscaffold_5510:88415-94668
Accession: 102530346
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000001239	APOBEC_N	PF08210.11	1.1e-27	1	1
ENSVPAP00000001239	APOBEC_C	PF05240.14	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000001342	APOBEC1-201	711	XM_006218396	ENSVPAP00000001239	236 (aa)	XP_006218458	UPI00018BCC3D

Gene Model

Click here to download ENSVPAG00000001343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000001343's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000001343	APOBEC1	100	75.424	ENSG00000111701	APOBEC1	100	75.424	Homo_sapiens
ENSVPAG00000001343	APOBEC1	98	76.623	ENSAMEG00000007098	APOBEC1	98	76.623	Ailuropoda_melanoleuca
ENSVPAG00000001343	APOBEC1	78	41.489	ENSACAG00000028578	-	98	41.489	Anolis_carolinensis
ENSVPAG00000001343	APOBEC1	100	76.271	ENSANAG00000027743	APOBEC1	95	76.271	Aotus_nancymaae
ENSVPAG00000001343	APOBEC1	100	74.153	ENSBTAG00000014683	APOBEC1	100	74.153	Bos_taurus
ENSVPAG00000001343	APOBEC1	94	76.471	ENSCJAG00000005398	APOBEC1	100	76.471	Callithrix_jacchus
ENSVPAG00000001343	APOBEC1	100	74.153	ENSCAFG00000013901	APOBEC1	100	74.153	Canis_familiaris
ENSVPAG00000001343	APOBEC1	96	73.009	ENSCAFG00020003511	APOBEC1	95	73.009	Canis_lupus_dingo
ENSVPAG00000001343	APOBEC1	98	73.593	ENSCHIG00000011898	APOBEC1	96	73.593	Capra_hircus
ENSVPAG00000001343	APOBEC1	58	73.913	ENSTSYG00000029141	APOBEC1	98	73.913	Carlito_syrichta
ENSVPAG00000001343	APOBEC1	91	67.757	ENSCAPG00000015882	-	99	67.757	Cavia_aperea
ENSVPAG00000001343	APOBEC1	99	67.660	ENSCPOG00000033068	APOBEC1	99	67.660	Cavia_porcellus
ENSVPAG00000001343	APOBEC1	100	76.271	ENSCCAG00000022258	APOBEC1	100	76.271	Cebus_capucinus
ENSVPAG00000001343	APOBEC1	100	75.847	ENSCATG00000021613	APOBEC1	95	75.847	Cercocebus_atys
ENSVPAG00000001343	APOBEC1	97	69.432	ENSCLAG00000014645	APOBEC1	99	69.432	Chinchilla_lanigera
ENSVPAG00000001343	APOBEC1	81	77.368	ENSCSAG00000009817	APOBEC1	99	77.368	Chlorocebus_sabaeus
ENSVPAG00000001343	APOBEC1	78	46.774	ENSCPBG00000014335	-	75	46.774	Chrysemys_picta_bellii
ENSVPAG00000001343	APOBEC1	98	41.702	ENSCPBG00000014331	-	94	41.702	Chrysemys_picta_bellii
ENSVPAG00000001343	APOBEC1	89	37.441	ENSCPBG00000014327	-	82	37.441	Chrysemys_picta_bellii
ENSVPAG00000001343	APOBEC1	83	46.429	ENSCPBG00000014329	-	54	46.429	Chrysemys_picta_bellii
ENSVPAG00000001343	APOBEC1	81	43.077	ENSCPBG00000014328	-	85	43.077	Chrysemys_picta_bellii
ENSVPAG00000001343	APOBEC1	77	41.398	ENSCPBG00000017398	-	82	41.398	Chrysemys_picta_bellii
ENSVPAG00000001343	APOBEC1	97	76.522	ENSCANG00000038359	APOBEC1	100	76.522	Colobus_angolensis_palliatus
ENSVPAG00000001343	APOBEC1	97	68.122	ENSCGRG00001011130	Apobec1	100	68.122	Cricetulus_griseus_chok1gshd
ENSVPAG00000001343	APOBEC1	97	68.122	ENSCGRG00000008644	Apobec1	100	68.122	Cricetulus_griseus_crigri
ENSVPAG00000001343	APOBEC1	100	72.458	ENSDNOG00000010926	APOBEC1	100	72.458	Dasypus_novemcinctus
ENSVPAG00000001343	APOBEC1	90	63.551	ENSDORG00000023717	Apobec1	100	63.551	Dipodomys_ordii
ENSVPAG00000001343	APOBEC1	99	72.340	ENSETEG00000004867	APOBEC1	99	72.340	Echinops_telfairi
ENSVPAG00000001343	APOBEC1	98	79.654	ENSEASG00005015951	APOBEC1	97	79.654	Equus_asinus_asinus
ENSVPAG00000001343	APOBEC1	81	78.421	ENSECAG00000017163	APOBEC1	99	78.421	Equus_caballus
ENSVPAG00000001343	APOBEC1	86	55.392	ENSEEUG00000007530	-	97	55.392	Erinaceus_europaeus
ENSVPAG00000001343	APOBEC1	91	66.667	ENSEEUG00000009112	-	96	66.667	Erinaceus_europaeus
ENSVPAG00000001343	APOBEC1	100	78.814	ENSFCAG00000009350	APOBEC1	100	78.814	Felis_catus
ENSVPAG00000001343	APOBEC1	60	50.000	ENSFALG00000007257	-	70	50.000	Ficedula_albicollis
ENSVPAG00000001343	APOBEC1	88	56.522	ENSFDAG00000018470	APOBEC1	99	56.522	Fukomys_damarensis
ENSVPAG00000001343	APOBEC1	67	47.826	ENSGAGG00000004947	-	80	47.826	Gopherus_agassizii
ENSVPAG00000001343	APOBEC1	87	39.614	ENSGAGG00000006624	-	69	39.614	Gopherus_agassizii
ENSVPAG00000001343	APOBEC1	92	46.575	ENSGAGG00000011837	-	88	55.000	Gopherus_agassizii
ENSVPAG00000001343	APOBEC1	72	40.462	ENSGAGG00000021745	-	64	40.462	Gopherus_agassizii
ENSVPAG00000001343	APOBEC1	83	39.086	ENSGAGG00000021744	-	77	39.086	Gopherus_agassizii
ENSVPAG00000001343	APOBEC1	99	62.128	ENSHGLG00000001495	APOBEC1	99	62.128	Heterocephalus_glaber_female
ENSVPAG00000001343	APOBEC1	99	61.702	ENSHGLG00100002187	APOBEC1	99	61.702	Heterocephalus_glaber_male
ENSVPAG00000001343	APOBEC1	91	59.070	ENSSTOG00000021971	APOBEC1	100	78.571	Ictidomys_tridecemlineatus
ENSVPAG00000001343	APOBEC1	97	71.616	ENSJJAG00000022108	Apobec1	100	71.616	Jaculus_jaculus
ENSVPAG00000001343	APOBEC1	94	71.749	ENSLAFG00000030837	APOBEC1	100	71.749	Loxodonta_africana
ENSVPAG00000001343	APOBEC1	100	76.271	ENSMFAG00000000277	APOBEC1	100	76.271	Macaca_fascicularis
ENSVPAG00000001343	APOBEC1	100	75.847	ENSMNEG00000029670	APOBEC1	100	75.847	Macaca_nemestrina
ENSVPAG00000001343	APOBEC1	100	75.847	ENSMLEG00000036301	APOBEC1	100	75.847	Mandrillus_leucophaeus
ENSVPAG00000001343	APOBEC1	92	68.519	ENSMAUG00000022167	Apobec1	97	68.519	Mesocricetus_auratus
ENSVPAG00000001343	APOBEC1	100	73.729	ENSMICG00000043645	APOBEC1	100	73.729	Microcebus_murinus
ENSVPAG00000001343	APOBEC1	100	64.407	ENSMODG00000018004	APOBEC1	100	64.407	Monodelphis_domestica
ENSVPAG00000001343	APOBEC1	97	66.667	ENSMUSG00000040613	Apobec1	99	68.750	Mus_musculus
ENSVPAG00000001343	APOBEC1	97	66.228	MGP_PahariEiJ_G0022580	-	99	68.750	Mus_pahari
ENSVPAG00000001343	APOBEC1	97	66.667	MGP_SPRETEiJ_G0029857	Apobec1	99	68.750	Mus_spretus
ENSVPAG00000001343	APOBEC1	100	75.847	ENSMPUG00000017532	APOBEC1	100	75.847	Mustela_putorius_furo
ENSVPAG00000001343	APOBEC1	97	68.996	ENSNGAG00000022607	Apobec1	100	68.996	Nannospalax_galili
ENSVPAG00000001343	APOBEC1	100	75.424	ENSNLEG00000005342	APOBEC1	100	75.424	Nomascus_leucogenys
ENSVPAG00000001343	APOBEC1	100	61.864	ENSMEUG00000013406	APOBEC1	100	61.864	Notamacropus_eugenii
ENSVPAG00000001343	APOBEC1	75	61.582	ENSOPRG00000009508	-	98	61.582	Ochotona_princeps
ENSVPAG00000001343	APOBEC1	100	69.915	ENSOCUG00000025736	APOBEC1	88	69.915	Oryctolagus_cuniculus
ENSVPAG00000001343	APOBEC1	98	73.160	ENSOGAG00000026415	APOBEC1	98	73.160	Otolemur_garnettii
ENSVPAG00000001343	APOBEC1	100	74.576	ENSOARG00000002072	APOBEC1	99	74.576	Ovis_aries
ENSVPAG00000001343	APOBEC1	98	70.563	ENSPPAG00000027657	APOBEC1	98	70.563	Pan_paniscus
ENSVPAG00000001343	APOBEC1	100	78.814	ENSPPRG00000012182	APOBEC1	100	78.814	Panthera_pardus
ENSVPAG00000001343	APOBEC1	100	78.814	ENSPTIG00000020280	APOBEC1	100	78.814	Panthera_tigris_altaica
ENSVPAG00000001343	APOBEC1	100	76.271	ENSPTRG00000004614	APOBEC1	100	76.271	Pan_troglodytes
ENSVPAG00000001343	APOBEC1	100	75.847	ENSPANG00000021027	APOBEC1	100	75.847	Papio_anubis
ENSVPAG00000001343	APOBEC1	78	40.217	ENSPSIG00000012568	-	80	40.217	Pelodiscus_sinensis
ENSVPAG00000001343	APOBEC1	53	47.899	ENSPSIG00000012791	-	71	47.899	Pelodiscus_sinensis
ENSVPAG00000001343	APOBEC1	97	68.559	ENSPEMG00000023841	Apobec1	100	68.559	Peromyscus_maniculatus_bairdii
ENSVPAG00000001343	APOBEC1	100	63.983	ENSPCIG00000023973	APOBEC1	100	63.983	Phascolarctos_cinereus
ENSVPAG00000001343	APOBEC1	100	73.729	ENSPPYG00000004228	APOBEC1	95	73.729	Pongo_abelii
ENSVPAG00000001343	APOBEC1	79	72.193	ENSPCAG00000008733	APOBEC1	100	72.193	Procavia_capensis
ENSVPAG00000001343	APOBEC1	94	75.676	ENSPCOG00000013957	APOBEC1	98	75.676	Propithecus_coquereli
ENSVPAG00000001343	APOBEC1	100	61.441	ENSPVAG00000010709	APOBEC1	100	61.441	Pteropus_vampyrus
ENSVPAG00000001343	APOBEC1	97	66.667	ENSRNOG00000015411	Apobec1	99	66.667	Rattus_norvegicus
ENSVPAG00000001343	APOBEC1	100	75.424	ENSRBIG00000031161	APOBEC1	100	75.424	Rhinopithecus_bieti
ENSVPAG00000001343	APOBEC1	100	75.424	ENSRROG00000033576	APOBEC1	100	75.424	Rhinopithecus_roxellana
ENSVPAG00000001343	APOBEC1	73	77.457	ENSSBOG00000030587	APOBEC1	98	77.457	Saimiri_boliviensis_boliviensis
ENSVPAG00000001343	APOBEC1	96	64.758	ENSSHAG00000008925	APOBEC1	99	64.758	Sarcophilus_harrisii
ENSVPAG00000001343	APOBEC1	56	68.702	ENSSARG00000011972	-	99	68.702	Sorex_araneus
ENSVPAG00000001343	APOBEC1	73	66.279	ENSSARG00000000032	-	100	66.279	Sorex_araneus
ENSVPAG00000001343	APOBEC1	86	41.063	ENSSPUG00000009044	-	79	41.063	Sphenodon_punctatus
ENSVPAG00000001343	APOBEC1	100	79.237	ENSSSCG00000000668	APOBEC1	100	79.237	Sus_scrofa
ENSVPAG00000001343	APOBEC1	61	49.315	ENSTGUG00000013118	-	100	49.315	Taeniopygia_guttata
ENSVPAG00000001343	APOBEC1	94	69.231	ENSTBEG00000010043	APOBEC1	94	69.231	Tupaia_belangeri
ENSVPAG00000001343	APOBEC1	79	77.540	ENSTTRG00000014015	APOBEC1	100	77.540	Tursiops_truncatus
ENSVPAG00000001343	APOBEC1	98	76.190	ENSUAMG00000011636	APOBEC1	95	76.190	Ursus_americanus
ENSVPAG00000001343	APOBEC1	98	76.190	ENSUMAG00000016552	APOBEC1	95	76.190	Ursus_maritimus
ENSVPAG00000001343	APOBEC1	100	75.000	ENSVVUG00000010522	APOBEC1	100	75.000	Vulpes_vulpes