EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVPAG00000002606 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 1146 bases
Position: chrscaffold_136421:293-1438
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000002408	zf-C2H2	PF00096.26	7.1e-23	1	4
ENSVPAP00000002408	zf-C2H2	PF00096.26	7.1e-23	2	4
ENSVPAP00000002408	zf-C2H2	PF00096.26	7.1e-23	3	4
ENSVPAP00000002408	zf-C2H2	PF00096.26	7.1e-23	4	4
ENSVPAP00000002408	zf-met	PF12874.7	5e-10	1	2
ENSVPAP00000002408	zf-met	PF12874.7	5e-10	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000002606	-	852	-	ENSVPAP00000002408	283 (aa)	-	UPI00018BC25D

Gene Model

Click here to download ENSVPAG00000002606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000002606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVPAG00000002606	-	64	45.588	ENSVPAG00000009652	-	88	45.588
ENSVPAG00000002606	-	61	46.087	ENSVPAG00000007435	PRDM5	69	46.087
ENSVPAG00000002606	-	82	45.926	ENSVPAG00000000904	ZNF132	94	45.926
ENSVPAG00000002606	-	60	47.826	ENSVPAG00000002698	-	100	47.826
ENSVPAG00000002606	-	50	50.893	ENSVPAG00000012526	ZFP1	72	50.893
ENSVPAG00000002606	-	57	52.778	ENSVPAG00000003027	ZFP69B	69	52.778
ENSVPAG00000002606	-	76	51.376	ENSVPAG00000006418	ZNF596	79	51.376
ENSVPAG00000002606	-	57	49.265	ENSVPAG00000011869	ZNF345	88	49.265
ENSVPAG00000002606	-	57	48.529	ENSVPAG00000011867	-	76	48.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000002606	-	98	61.151	ENSCHIG00000015589	-	71	61.151	Capra_hircus
ENSVPAG00000002606	-	98	58.065	ENSCHIG00000014993	-	56	58.065	Capra_hircus
ENSVPAG00000002606	-	98	57.706	ENSCHIG00000024202	-	56	57.706	Capra_hircus
ENSVPAG00000002606	-	99	50.000	ENSDNOG00000010100	-	58	50.000	Dasypus_novemcinctus
ENSVPAG00000002606	-	100	57.192	ENSEASG00005020480	-	59	57.192	Equus_asinus_asinus
ENSVPAG00000002606	-	100	53.548	ENSECAG00000006782	-	60	53.548	Equus_caballus
ENSVPAG00000002606	-	100	51.042	ENSFCAG00000041174	-	59	51.042	Felis_catus
ENSVPAG00000002606	-	100	51.536	ENSMPUG00000006686	-	58	51.536	Mustela_putorius_furo
ENSVPAG00000002606	-	99	52.055	ENSMLUG00000029894	-	63	52.055	Myotis_lucifugus
ENSVPAG00000002606	-	98	50.350	ENSMLUG00000024124	-	57	50.350	Myotis_lucifugus
ENSVPAG00000002606	-	99	48.288	ENSOGAG00000011347	-	59	47.782	Otolemur_garnettii
ENSVPAG00000002606	-	99	48.276	ENSOGAG00000026429	-	60	48.276	Otolemur_garnettii
ENSVPAG00000002606	-	100	50.347	ENSPTIG00000015051	-	59	50.347	Panthera_tigris_altaica
ENSVPAG00000002606	-	100	54.138	ENSPVAG00000017654	-	59	54.138	Pteropus_vampyrus