EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000003402 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 3499 bases
Position: chrGeneScaffold_785:561892-565390
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000003145	SMN	PF06003.12	2.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000003401	SMNDC1-201	597	-	ENSVPAP00000003145	198 (aa)	-	UPI00018BDC4C

Gene Model

Click here to download ENSVPAG00000003402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000003402's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000003402	SMNDC1	100	98.990	ENSG00000119953	SMNDC1	83	98.990	Homo_sapiens
ENSVPAG00000003402	SMNDC1	100	74.242	ENSAPOG00000021772	smndc1	83	74.242	Acanthochromis_polyacanthus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSAMEG00000005251	SMNDC1	83	99.495	Ailuropoda_melanoleuca
ENSVPAG00000003402	SMNDC1	100	75.758	ENSACIG00000004819	smndc1	83	75.758	Amphilophus_citrinellus
ENSVPAG00000003402	SMNDC1	100	74.242	ENSAOCG00000017869	smndc1	83	74.242	Amphiprion_ocellaris
ENSVPAG00000003402	SMNDC1	100	74.242	ENSAPEG00000007752	smndc1	83	74.242	Amphiprion_percula
ENSVPAG00000003402	SMNDC1	100	75.253	ENSATEG00000006830	smndc1	83	75.253	Anabas_testudineus
ENSVPAG00000003402	SMNDC1	100	96.970	ENSAPLG00000004322	SMNDC1	100	96.970	Anas_platyrhynchos
ENSVPAG00000003402	SMNDC1	100	95.455	ENSACAG00000005983	SMNDC1	83	95.455	Anolis_carolinensis
ENSVPAG00000003402	SMNDC1	100	99.495	ENSANAG00000032875	SMNDC1	83	99.495	Aotus_nancymaae
ENSVPAG00000003402	SMNDC1	100	76.263	ENSACLG00000016360	smndc1	83	76.263	Astatotilapia_calliptera
ENSVPAG00000003402	SMNDC1	100	75.758	ENSAMXG00000020310	smndc1	83	75.758	Astyanax_mexicanus
ENSVPAG00000003402	SMNDC1	100	98.990	ENSBTAG00000000551	SMNDC1	83	98.990	Bos_taurus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSCJAG00000018624	SMNDC1	83	99.495	Callithrix_jacchus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSCAFG00000010720	SMNDC1	83	99.495	Canis_familiaris
ENSVPAG00000003402	SMNDC1	100	99.495	ENSCAFG00020011913	SMNDC1	83	99.495	Canis_lupus_dingo
ENSVPAG00000003402	SMNDC1	100	98.990	ENSCHIG00000010604	SMNDC1	99	98.990	Capra_hircus
ENSVPAG00000003402	SMNDC1	100	100.000	ENSTSYG00000026454	SMNDC1	83	100.000	Carlito_syrichta
ENSVPAG00000003402	SMNDC1	81	98.137	ENSCAPG00000009132	SMNDC1	80	98.137	Cavia_aperea
ENSVPAG00000003402	SMNDC1	100	98.485	ENSCPOG00000031666	SMNDC1	83	98.485	Cavia_porcellus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSCCAG00000021793	SMNDC1	83	99.495	Cebus_capucinus
ENSVPAG00000003402	SMNDC1	100	98.990	ENSCATG00000035910	SMNDC1	83	98.990	Cercocebus_atys
ENSVPAG00000003402	SMNDC1	100	98.485	ENSCLAG00000002838	SMNDC1	83	98.485	Chinchilla_lanigera
ENSVPAG00000003402	SMNDC1	100	99.495	ENSCSAG00000005169	SMNDC1	83	99.495	Chlorocebus_sabaeus
ENSVPAG00000003402	SMNDC1	77	98.693	ENSCHOG00000002936	SMNDC1	79	98.693	Choloepus_hoffmanni
ENSVPAG00000003402	SMNDC1	100	97.980	ENSCPBG00000012837	SMNDC1	83	97.980	Chrysemys_picta_bellii
ENSVPAG00000003402	SMNDC1	100	75.253	ENSCANG00000036994	-	80	75.253	Colobus_angolensis_palliatus
ENSVPAG00000003402	SMNDC1	100	89.899	ENSCANG00000034620	-	82	89.899	Colobus_angolensis_palliatus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSCANG00000031720	-	83	99.495	Colobus_angolensis_palliatus
ENSVPAG00000003402	SMNDC1	100	98.485	ENSCGRG00001012973	Smndc1	83	98.485	Cricetulus_griseus_chok1gshd
ENSVPAG00000003402	SMNDC1	100	98.485	ENSCGRG00000012396	Smndc1	83	98.485	Cricetulus_griseus_crigri
ENSVPAG00000003402	SMNDC1	100	75.758	ENSCSEG00000015621	smndc1	83	75.758	Cynoglossus_semilaevis
ENSVPAG00000003402	SMNDC1	100	76.263	ENSCVAG00000020432	smndc1	83	76.263	Cyprinodon_variegatus
ENSVPAG00000003402	SMNDC1	100	79.293	ENSDARG00000056235	smndc1	83	79.293	Danio_rerio
ENSVPAG00000003402	SMNDC1	100	99.495	ENSDNOG00000016387	SMNDC1	69	99.495	Dasypus_novemcinctus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSDORG00000023715	Smndc1	83	99.495	Dipodomys_ordii
ENSVPAG00000003402	SMNDC1	96	39.070	FBgn0039977	CG17454	88	40.465	Drosophila_melanogaster
ENSVPAG00000003402	SMNDC1	100	71.642	ENSEBUG00000010929	smndc1	83	71.642	Eptatretus_burgeri
ENSVPAG00000003402	SMNDC1	100	99.495	ENSEASG00005014930	SMNDC1	83	99.495	Equus_asinus_asinus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSECAG00000029973	SMNDC1	83	99.495	Equus_caballus
ENSVPAG00000003402	SMNDC1	100	70.202	ENSEEUG00000013407	-	100	70.202	Erinaceus_europaeus
ENSVPAG00000003402	SMNDC1	100	76.768	ENSELUG00000000227	smndc1	83	76.768	Esox_lucius
ENSVPAG00000003402	SMNDC1	100	99.495	ENSFCAG00000027353	SMNDC1	83	99.495	Felis_catus
ENSVPAG00000003402	SMNDC1	100	96.970	ENSFALG00000002306	SMNDC1	83	96.970	Ficedula_albicollis
ENSVPAG00000003402	SMNDC1	100	97.980	ENSFDAG00000006468	SMNDC1	83	97.980	Fukomys_damarensis
ENSVPAG00000003402	SMNDC1	100	75.253	ENSFHEG00000020150	smndc1	83	75.253	Fundulus_heteroclitus
ENSVPAG00000003402	SMNDC1	100	75.758	ENSGMOG00000016585	smndc1	83	75.758	Gadus_morhua
ENSVPAG00000003402	SMNDC1	100	96.970	ENSGALG00000008561	SMNDC1	83	96.970	Gallus_gallus
ENSVPAG00000003402	SMNDC1	100	74.242	ENSGAFG00000011582	smndc1	83	74.242	Gambusia_affinis
ENSVPAG00000003402	SMNDC1	100	74.747	ENSGACG00000009468	smndc1	83	74.747	Gasterosteus_aculeatus
ENSVPAG00000003402	SMNDC1	100	97.980	ENSGAGG00000024547	SMNDC1	83	97.980	Gopherus_agassizii
ENSVPAG00000003402	SMNDC1	100	99.495	ENSGGOG00000010071	SMNDC1	99	99.495	Gorilla_gorilla
ENSVPAG00000003402	SMNDC1	100	76.263	ENSHBUG00000017596	smndc1	83	76.263	Haplochromis_burtoni
ENSVPAG00000003402	SMNDC1	99	64.975	ENSHGLG00000001157	-	77	61.111	Heterocephalus_glaber_female
ENSVPAG00000003402	SMNDC1	100	97.980	ENSHGLG00000013390	-	83	97.980	Heterocephalus_glaber_female
ENSVPAG00000003402	SMNDC1	99	75.127	ENSHGLG00100004278	-	79	74.619	Heterocephalus_glaber_male
ENSVPAG00000003402	SMNDC1	100	97.980	ENSHGLG00100004814	-	83	97.980	Heterocephalus_glaber_male
ENSVPAG00000003402	SMNDC1	100	73.367	ENSHCOG00000000783	smndc1	83	73.367	Hippocampus_comes
ENSVPAG00000003402	SMNDC1	100	78.283	ENSIPUG00000004217	smndc1	83	78.283	Ictalurus_punctatus
ENSVPAG00000003402	SMNDC1	100	100.000	ENSSTOG00000006088	SMNDC1	83	100.000	Ictidomys_tridecemlineatus
ENSVPAG00000003402	SMNDC1	100	98.485	ENSJJAG00000019974	Smndc1	83	98.485	Jaculus_jaculus
ENSVPAG00000003402	SMNDC1	100	74.747	ENSKMAG00000020134	smndc1	83	74.747	Kryptolebias_marmoratus
ENSVPAG00000003402	SMNDC1	100	73.737	ENSLBEG00000004598	smndc1	83	73.737	Labrus_bergylta
ENSVPAG00000003402	SMNDC1	100	83.838	ENSLACG00000007784	SMNDC1	83	83.838	Latimeria_chalumnae
ENSVPAG00000003402	SMNDC1	100	83.838	ENSLOCG00000012355	smndc1	83	83.838	Lepisosteus_oculatus
ENSVPAG00000003402	SMNDC1	100	98.990	ENSLAFG00000014353	SMNDC1	83	98.990	Loxodonta_africana
ENSVPAG00000003402	SMNDC1	90	91.573	ENSMFAG00000038381	-	84	91.573	Macaca_fascicularis
ENSVPAG00000003402	SMNDC1	100	99.495	ENSMFAG00000002433	-	83	99.495	Macaca_fascicularis
ENSVPAG00000003402	SMNDC1	90	91.573	ENSMMUG00000045875	-	84	91.573	Macaca_mulatta
ENSVPAG00000003402	SMNDC1	100	99.495	ENSMMUG00000007775	SMNDC1	83	99.495	Macaca_mulatta
ENSVPAG00000003402	SMNDC1	100	99.495	ENSMNEG00000042963	-	83	99.495	Macaca_nemestrina
ENSVPAG00000003402	SMNDC1	100	85.859	ENSMNEG00000033853	-	82	85.859	Macaca_nemestrina
ENSVPAG00000003402	SMNDC1	100	92.424	ENSMLEG00000040236	SMNDC1	82	91.919	Mandrillus_leucophaeus
ENSVPAG00000003402	SMNDC1	87	71.098	ENSMAMG00000018233	smndc1	71	71.098	Mastacembelus_armatus
ENSVPAG00000003402	SMNDC1	100	76.263	ENSMZEG00005027510	smndc1	83	76.263	Maylandia_zebra
ENSVPAG00000003402	SMNDC1	100	96.465	ENSMGAG00000010777	SMNDC1	84	96.465	Meleagris_gallopavo
ENSVPAG00000003402	SMNDC1	99	78.173	ENSMAUG00000005459	-	77	78.173	Mesocricetus_auratus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSMAUG00000012243	-	83	99.495	Mesocricetus_auratus
ENSVPAG00000003402	SMNDC1	100	84.848	ENSMICG00000031640	-	82	84.848	Microcebus_murinus
ENSVPAG00000003402	SMNDC1	100	98.485	ENSMICG00000027336	-	99	98.485	Microcebus_murinus
ENSVPAG00000003402	SMNDC1	100	98.990	ENSMOCG00000002458	Smndc1	83	98.990	Microtus_ochrogaster
ENSVPAG00000003402	SMNDC1	100	75.253	ENSMMOG00000008856	smndc1	83	75.253	Mola_mola
ENSVPAG00000003402	SMNDC1	100	99.495	ENSMODG00000010542	SMNDC1	83	99.495	Monodelphis_domestica
ENSVPAG00000003402	SMNDC1	100	76.263	ENSMALG00000017598	smndc1	83	76.263	Monopterus_albus
ENSVPAG00000003402	SMNDC1	100	97.980	MGP_CAROLIEiJ_G0023072	Smndc1	83	97.980	Mus_caroli
ENSVPAG00000003402	SMNDC1	100	98.485	ENSMUSG00000025024	Smndc1	83	98.485	Mus_musculus
ENSVPAG00000003402	SMNDC1	100	98.990	MGP_PahariEiJ_G0014560	Smndc1	83	98.990	Mus_pahari
ENSVPAG00000003402	SMNDC1	100	98.485	MGP_SPRETEiJ_G0023993	Smndc1	83	98.485	Mus_spretus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSMPUG00000002089	SMNDC1	83	99.495	Mustela_putorius_furo
ENSVPAG00000003402	SMNDC1	100	98.990	ENSMLUG00000016007	SMNDC1	83	98.990	Myotis_lucifugus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSNGAG00000006833	Smndc1	83	99.495	Nannospalax_galili
ENSVPAG00000003402	SMNDC1	100	75.758	ENSNBRG00000017089	smndc1	83	75.758	Neolamprologus_brichardi
ENSVPAG00000003402	SMNDC1	100	99.495	ENSNLEG00000015471	SMNDC1	83	99.495	Nomascus_leucogenys
ENSVPAG00000003402	SMNDC1	99	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSVPAG00000003402	SMNDC1	100	98.485	ENSOPRG00000015348	SMNDC1	83	98.485	Ochotona_princeps
ENSVPAG00000003402	SMNDC1	100	73.232	ENSODEG00000007594	-	87	69.697	Octodon_degus
ENSVPAG00000003402	SMNDC1	100	75.758	ENSONIG00000000434	smndc1	83	75.758	Oreochromis_niloticus
ENSVPAG00000003402	SMNDC1	100	97.980	ENSOANG00000001598	SMNDC1	83	97.980	Ornithorhynchus_anatinus
ENSVPAG00000003402	SMNDC1	100	98.485	ENSOCUG00000008145	-	83	98.485	Oryctolagus_cuniculus
ENSVPAG00000003402	SMNDC1	100	73.232	ENSOCUG00000012274	-	82	76.263	Oryctolagus_cuniculus
ENSVPAG00000003402	SMNDC1	100	75.758	ENSORLG00000005934	smndc1	79	75.758	Oryzias_latipes
ENSVPAG00000003402	SMNDC1	100	75.758	ENSORLG00020008796	smndc1	79	75.758	Oryzias_latipes_hni
ENSVPAG00000003402	SMNDC1	100	75.758	ENSORLG00015013666	smndc1	83	75.758	Oryzias_latipes_hsok
ENSVPAG00000003402	SMNDC1	100	77.778	ENSOMEG00000007590	smndc1	83	77.778	Oryzias_melastigma
ENSVPAG00000003402	SMNDC1	100	98.990	ENSOGAG00000000571	SMNDC1	83	98.990	Otolemur_garnettii
ENSVPAG00000003402	SMNDC1	100	98.990	ENSOARG00000009500	SMNDC1	83	98.990	Ovis_aries
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPPAG00000027815	SMNDC1	99	99.495	Pan_paniscus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPPRG00000013749	SMNDC1	83	99.495	Panthera_pardus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPTIG00000011451	SMNDC1	83	99.495	Panthera_tigris_altaica
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPTRG00000002937	SMNDC1	99	99.495	Pan_troglodytes
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPANG00000020805	-	83	99.495	Papio_anubis
ENSVPAG00000003402	SMNDC1	100	92.424	ENSPANG00000031346	-	83	92.424	Papio_anubis
ENSVPAG00000003402	SMNDC1	100	79.798	ENSPKIG00000017164	smndc1	83	79.798	Paramormyrops_kingsleyae
ENSVPAG00000003402	SMNDC1	100	97.475	ENSPSIG00000012257	SMNDC1	83	97.475	Pelodiscus_sinensis
ENSVPAG00000003402	SMNDC1	100	72.222	ENSPMGG00000015651	smndc1	83	72.222	Periophthalmus_magnuspinnatus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPEMG00000022058	Smndc1	83	99.495	Peromyscus_maniculatus_bairdii
ENSVPAG00000003402	SMNDC1	100	67.647	ENSPMAG00000007705	smndc1	83	67.647	Petromyzon_marinus
ENSVPAG00000003402	SMNDC1	83	70.303	ENSPCIG00000009693	-	81	70.303	Phascolarctos_cinereus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPCIG00000018419	SMNDC1	83	99.495	Phascolarctos_cinereus
ENSVPAG00000003402	SMNDC1	100	74.747	ENSPFOG00000017113	smndc1	83	74.747	Poecilia_formosa
ENSVPAG00000003402	SMNDC1	100	75.253	ENSPLAG00000010372	smndc1	83	75.253	Poecilia_latipinna
ENSVPAG00000003402	SMNDC1	100	75.253	ENSPMEG00000012288	smndc1	83	75.253	Poecilia_mexicana
ENSVPAG00000003402	SMNDC1	100	74.242	ENSPREG00000012279	smndc1	83	74.242	Poecilia_reticulata
ENSVPAG00000003402	SMNDC1	100	99.495	ENSPPYG00000002643	SMNDC1	83	99.495	Pongo_abelii
ENSVPAG00000003402	SMNDC1	77	98.039	ENSPCAG00000016183	SMNDC1	79	98.039	Procavia_capensis
ENSVPAG00000003402	SMNDC1	100	98.990	ENSPCOG00000024343	SMNDC1	83	98.990	Propithecus_coquereli
ENSVPAG00000003402	SMNDC1	100	70.707	ENSPVAG00000004368	SMNDC1	83	70.707	Pteropus_vampyrus
ENSVPAG00000003402	SMNDC1	100	76.263	ENSPNYG00000024093	smndc1	86	76.263	Pundamilia_nyererei
ENSVPAG00000003402	SMNDC1	100	76.263	ENSPNAG00000025285	smndc1	83	76.263	Pygocentrus_nattereri
ENSVPAG00000003402	SMNDC1	100	97.980	ENSRNOG00000014833	Smndc1	83	97.980	Rattus_norvegicus
ENSVPAG00000003402	SMNDC1	100	98.990	ENSRBIG00000000224	-	83	98.990	Rhinopithecus_bieti
ENSVPAG00000003402	SMNDC1	100	80.808	ENSRBIG00000032452	-	81	80.808	Rhinopithecus_bieti
ENSVPAG00000003402	SMNDC1	100	99.495	ENSRROG00000044992	-	83	99.495	Rhinopithecus_roxellana
ENSVPAG00000003402	SMNDC1	100	81.313	ENSRROG00000039125	-	81	81.313	Rhinopithecus_roxellana
ENSVPAG00000003402	SMNDC1	100	99.495	ENSSBOG00000026789	SMNDC1	99	99.495	Saimiri_boliviensis_boliviensis
ENSVPAG00000003402	SMNDC1	100	99.495	ENSSHAG00000015189	SMNDC1	99	99.495	Sarcophilus_harrisii
ENSVPAG00000003402	SMNDC1	100	79.798	ENSSFOG00015008311	smndc1	83	79.798	Scleropages_formosus
ENSVPAG00000003402	SMNDC1	100	75.758	ENSSMAG00000020118	smndc1	83	75.758	Scophthalmus_maximus
ENSVPAG00000003402	SMNDC1	100	76.263	ENSSDUG00000015330	smndc1	83	76.263	Seriola_dumerili
ENSVPAG00000003402	SMNDC1	100	76.263	ENSSLDG00000017325	smndc1	83	76.263	Seriola_lalandi_dorsalis
ENSVPAG00000003402	SMNDC1	100	98.485	ENSSARG00000006063	SMNDC1	83	98.485	Sorex_araneus
ENSVPAG00000003402	SMNDC1	100	96.465	ENSSPUG00000004574	SMNDC1	83	96.465	Sphenodon_punctatus
ENSVPAG00000003402	SMNDC1	100	73.232	ENSSPAG00000000338	smndc1	83	73.232	Stegastes_partitus
ENSVPAG00000003402	SMNDC1	100	98.990	ENSSSCG00000030507	SMNDC1	99	98.990	Sus_scrofa
ENSVPAG00000003402	SMNDC1	100	96.970	ENSTGUG00000010599	SMNDC1	83	96.970	Taeniopygia_guttata
ENSVPAG00000003402	SMNDC1	100	73.232	ENSTRUG00000023281	smndc1	83	73.232	Takifugu_rubripes
ENSVPAG00000003402	SMNDC1	100	73.737	ENSTNIG00000013331	smndc1	83	73.737	Tetraodon_nigroviridis
ENSVPAG00000003402	SMNDC1	100	98.990	ENSTBEG00000014337	SMNDC1	83	98.990	Tupaia_belangeri
ENSVPAG00000003402	SMNDC1	100	99.495	ENSUAMG00000008142	SMNDC1	99	99.495	Ursus_americanus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSUMAG00000023722	SMNDC1	83	99.495	Ursus_maritimus
ENSVPAG00000003402	SMNDC1	100	99.495	ENSVVUG00000007820	SMNDC1	83	99.495	Vulpes_vulpes
ENSVPAG00000003402	SMNDC1	52	80.392	ENSXETG00000015415	SMNDC1	72	80.392	Xenopus_tropicalis
ENSVPAG00000003402	SMNDC1	100	74.242	ENSXCOG00000009159	smndc1	83	74.242	Xiphophorus_couchianus
ENSVPAG00000003402	SMNDC1	100	73.737	ENSXMAG00000012755	smndc1	83	73.737	Xiphophorus_maculatus