EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSVPAG00000003525 (Gene tree)
Gene ID
-
Gene Symbol
UPF3A
Alias
HUPF3A|RENT3A|UPF3
Full Name
UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Vicugna_pacos
Status
putative
Strand
Plus strand
Length
19303 bases
Position
chrGeneScaffold_3454:55327-74629
Accession
20332
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSVPAP00000003266Smg4_UPF3PF03467.152.7e-5011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSVPAT00000003525UPF3A-2011206-ENSVPAP00000003266401 (aa)-UPI00018BCAC4
Gene Model
Click here to download ENSVPAG00000003525's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000003525's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSVPAG00000003525UPF3A5658.590ENSG00000125351UPF3B7269.872Homo_sapiens
ENSVPAG00000003525UPF3A10074.328ENSG00000169062UPF3A8674.328Homo_sapiens
ENSVPAG00000003525UPF3A9457.702ENSAPOG00000013484upf3a8059.008Acanthochromis_polyacanthus
ENSVPAG00000003525UPF3A9975.779ENSAMEG00000004259UPF3A9175.779Ailuropoda_melanoleuca
ENSVPAG00000003525UPF3A9845.036ENSAMEG00000000163UPF3B8746.247Ailuropoda_melanoleuca
ENSVPAG00000003525UPF3A9457.702ENSAOCG00000020784upf3a8059.008Amphiprion_ocellaris
ENSVPAG00000003525UPF3A5857.025ENSAOCG00000000706upf3b8747.044Amphiprion_ocellaris
ENSVPAG00000003525UPF3A9457.702ENSAPEG00000003519upf3a8059.008Amphiprion_percula
ENSVPAG00000003525UPF3A9459.530ENSATEG00000005843upf3a8059.530Anabas_testudineus
ENSVPAG00000003525UPF3A9446.835ENSACAG00000003625UPF3B8451.777Anolis_carolinensis
ENSVPAG00000003525UPF3A9668.031ENSACAG00000001540UPF3A9268.766Anolis_carolinensis
ENSVPAG00000003525UPF3A9845.521ENSANAG00000021894-7369.427Aotus_nancymaae
ENSVPAG00000003525UPF3A9844.417ENSANAG00000025598-8646.359Aotus_nancymaae
ENSVPAG00000003525UPF3A10070.905ENSANAG00000021713UPF3A8670.905Aotus_nancymaae
ENSVPAG00000003525UPF3A5654.585ENSACLG00000001649upf3b8744.282Astatotilapia_calliptera
ENSVPAG00000003525UPF3A9558.718ENSAMXG00000002608upf3a8358.462Astyanax_mexicanus
ENSVPAG00000003525UPF3A10071.638ENSCJAG00000019102UPF3A8571.638Callithrix_jacchus
ENSVPAG00000003525UPF3A9845.521ENSCJAG00000004975UPF3B7368.790Callithrix_jacchus
ENSVPAG00000003525UPF3A9576.031ENSCAFG00000006504UPF3A8376.031Canis_familiaris
ENSVPAG00000003525UPF3A9645.387ENSCAFG00000018426UPF3B8746.898Canis_familiaris
ENSVPAG00000003525UPF3A9774.690ENSCAFG00020014268UPF3A8474.690Canis_lupus_dingo
ENSVPAG00000003525UPF3A9844.499ENSCAFG00020004074UPF3B7576.923Canis_lupus_dingo
ENSVPAG00000003525UPF3A9973.710ENSCHIG00000008682UPF3A8073.710Capra_hircus
ENSVPAG00000003525UPF3A8465.266ENSTSYG00000001918UPF3A9565.266Carlito_syrichta
ENSVPAG00000003525UPF3A9844.634ENSTSYG00000014690UPF3B7363.580Carlito_syrichta
ENSVPAG00000003525UPF3A8568.035ENSCPOG00000006824UPF3A7968.035Cavia_porcellus
ENSVPAG00000003525UPF3A6246.371ENSCCAG00000029813-5355.901Cebus_capucinus
ENSVPAG00000003525UPF3A10073.350ENSCCAG00000018406UPF3A8673.350Cebus_capucinus
ENSVPAG00000003525UPF3A5658.590ENSCATG00000017506UPF3B7369.427Cercocebus_atys
ENSVPAG00000003525UPF3A10073.105ENSCATG00000029733UPF3A8573.105Cercocebus_atys
ENSVPAG00000003525UPF3A5757.759ENSCLAG00000003260UPF3B8746.229Chinchilla_lanigera
ENSVPAG00000003525UPF3A10072.330ENSCSAG00000017388UPF3A8572.330Chlorocebus_sabaeus
ENSVPAG00000003525UPF3A8295.946ENSCHOG00000006918-7095.946Choloepus_hoffmanni
ENSVPAG00000003525UPF3A5559.009ENSCPBG00000020685UPF3B8445.477Chrysemys_picta_bellii
ENSVPAG00000003525UPF3A8969.399ENSCGRG00001017387Upf3a8469.399Cricetulus_griseus_chok1gshd
ENSVPAG00000003525UPF3A5757.576ENSCGRG00001013643-6357.576Cricetulus_griseus_chok1gshd
ENSVPAG00000003525UPF3A5756.897ENSCGRG00000007627Upf3b9845.388Cricetulus_griseus_crigri
ENSVPAG00000003525UPF3A8969.399ENSCGRG00000001468Upf3a8469.399Cricetulus_griseus_crigri
ENSVPAG00000003525UPF3A10056.585ENSCSEG00000005106upf3a8158.854Cynoglossus_semilaevis
ENSVPAG00000003525UPF3A9346.377ENSCSEG00000002046upf3b8247.952Cynoglossus_semilaevis
ENSVPAG00000003525UPF3A9458.225ENSCVAG00000022333upf3a8058.225Cyprinodon_variegatus
ENSVPAG00000003525UPF3A9556.041ENSDARG00000069297upf3a8355.412Danio_rerio
ENSVPAG00000003525UPF3A5756.838ENSDARG00000000489upf3b8649.015Danio_rerio
ENSVPAG00000003525UPF3A10043.607ENSDNOG00000008665UPF3B8943.218Dasypus_novemcinctus
ENSVPAG00000003525UPF3A8777.119ENSDNOG00000034391UPF3A8077.119Dasypus_novemcinctus
ENSVPAG00000003525UPF3A9964.286ENSETEG00000010110UPF3A8464.286Echinops_telfairi
ENSVPAG00000003525UPF3A9846.472ENSEASG00005012919UPF3B8745.232Equus_asinus_asinus
ENSVPAG00000003525UPF3A10075.000ENSEASG00005021884UPF3A8775.000Equus_asinus_asinus
ENSVPAG00000003525UPF3A9846.472ENSECAG00000016947UPF3B8745.232Equus_caballus
ENSVPAG00000003525UPF3A10075.721ENSECAG00000017141UPF3A8775.721Equus_caballus
ENSVPAG00000003525UPF3A5560.345ENSELUG00000020389upf3b8542.118Esox_lucius
ENSVPAG00000003525UPF3A9558.081ENSELUG00000011050upf3a8258.081Esox_lucius
ENSVPAG00000003525UPF3A5658.590ENSFCAG00000004388UPF3B8446.650Felis_catus
ENSVPAG00000003525UPF3A9975.980ENSFCAG00000014602UPF3A8575.980Felis_catus
ENSVPAG00000003525UPF3A9845.278ENSFDAG00000018869UPF3B8745.985Fukomys_damarensis
ENSVPAG00000003525UPF3A5861.826ENSGMOG00000001621upf3b8648.642Gadus_morhua
ENSVPAG00000003525UPF3A8258.309ENSGMOG00000019615upf3a9958.309Gadus_morhua
ENSVPAG00000003525UPF3A9458.333ENSGAFG00000021170upf3a8058.333Gambusia_affinis
ENSVPAG00000003525UPF3A8258.912ENSGACG00000001972upf3a9958.580Gasterosteus_aculeatus
ENSVPAG00000003525UPF3A9243.702ENSGACG00000017435upf3b8547.132Gasterosteus_aculeatus
ENSVPAG00000003525UPF3A10074.572ENSGGOG00000015428UPF3A8674.572Gorilla_gorilla
ENSVPAG00000003525UPF3A10063.570ENSGGOG00000041219-9164.059Gorilla_gorilla
ENSVPAG00000003525UPF3A10063.570ENSGGOG00000043074-8762.103Gorilla_gorilla
ENSVPAG00000003525UPF3A5658.590ENSGGOG00000023995UPF3B8547.395Gorilla_gorilla
ENSVPAG00000003525UPF3A5654.585ENSHBUG00000017393upf3b8743.932Haplochromis_burtoni
ENSVPAG00000003525UPF3A9844.526ENSHGLG00000019582-8745.742Heterocephalus_glaber_female
ENSVPAG00000003525UPF3A8567.257ENSHGLG00000001544UPF3A7867.257Heterocephalus_glaber_female
ENSVPAG00000003525UPF3A5554.185ENSHGLG00000011189-8145.000Heterocephalus_glaber_female
ENSVPAG00000003525UPF3A9843.510ENSHGLG00100002042-8646.269Heterocephalus_glaber_male
ENSVPAG00000003525UPF3A8567.257ENSHGLG00100013244UPF3A7867.257Heterocephalus_glaber_male
ENSVPAG00000003525UPF3A5554.185ENSHGLG00100001889-8144.940Heterocephalus_glaber_male
ENSVPAG00000003525UPF3A9448.642ENSHCOG00000017004upf3b8648.762Hippocampus_comes
ENSVPAG00000003525UPF3A5557.328ENSIPUG00000019249upf3b8946.387Ictalurus_punctatus
ENSVPAG00000003525UPF3A9558.462ENSIPUG00000023450upf3a8358.205Ictalurus_punctatus
ENSVPAG00000003525UPF3A5757.759ENSSTOG00000001101UPF3B8346.939Ictidomys_tridecemlineatus
ENSVPAG00000003525UPF3A9558.869ENSKMAG00000004381upf3a8158.869Kryptolebias_marmoratus
ENSVPAG00000003525UPF3A5857.851ENSLBEG00000028689upf3b5259.917Labrus_bergylta
ENSVPAG00000003525UPF3A7345.783ENSLACG00000006645UPF3A9941.144Latimeria_chalumnae
ENSVPAG00000003525UPF3A9960.345ENSLOCG00000002665upf3a8560.837Lepisosteus_oculatus
ENSVPAG00000003525UPF3A5665.236ENSLOCG00000015238upf3b8646.373Lepisosteus_oculatus
ENSVPAG00000003525UPF3A9563.054ENSLAFG00000023358UPF3A9364.213Loxodonta_africana
ENSVPAG00000003525UPF3A9445.802ENSLAFG00000001267UPF3B8347.342Loxodonta_africana
ENSVPAG00000003525UPF3A10071.638ENSMFAG00000045016UPF3A8571.638Macaca_fascicularis
ENSVPAG00000003525UPF3A5658.590ENSMFAG00000045414UPF3B7369.427Macaca_fascicularis
ENSVPAG00000003525UPF3A9275.397ENSMMUG00000007449UPF3A8872.616Macaca_mulatta
ENSVPAG00000003525UPF3A5658.590ENSMMUG00000020222UPF3B7369.427Macaca_mulatta
ENSVPAG00000003525UPF3A10073.105ENSMNEG00000036402UPF3A8373.105Macaca_nemestrina
ENSVPAG00000003525UPF3A5658.590ENSMNEG00000039794UPF3B7369.427Macaca_nemestrina
ENSVPAG00000003525UPF3A5658.590ENSMLEG00000010999UPF3B7369.427Mandrillus_leucophaeus
ENSVPAG00000003525UPF3A10072.861ENSMLEG00000014726UPF3A9472.861Mandrillus_leucophaeus
ENSVPAG00000003525UPF3A9457.393ENSMAMG00000018364upf3a8157.143Mastacembelus_armatus
ENSVPAG00000003525UPF3A5654.585ENSMZEG00005007871upf3b8744.282Maylandia_zebra
ENSVPAG00000003525UPF3A9665.250ENSMGAG00000014837UPF3A9965.250Meleagris_gallopavo
ENSVPAG00000003525UPF3A5758.621ENSMAUG00000008705Upf3b8350.000Mesocricetus_auratus
ENSVPAG00000003525UPF3A6479.688ENSMOCG00000000550Upf3a7179.688Microtus_ochrogaster
ENSVPAG00000003525UPF3A9456.250ENSMMOG00000019751upf3a8156.250Mola_mola
ENSVPAG00000003525UPF3A9571.907ENSMODG00000003159UPF3A9171.907Monodelphis_domestica
ENSVPAG00000003525UPF3A9447.015ENSMODG00000010232UPF3B9252.488Monodelphis_domestica
ENSVPAG00000003525UPF3A8968.306MGP_CAROLIEiJ_G0030848Upf3a8368.306Mus_caroli
ENSVPAG00000003525UPF3A9843.341MGP_CAROLIEiJ_G0032999Upf3b8748.681Mus_caroli
ENSVPAG00000003525UPF3A8969.672ENSMUSG00000038398Upf3a8469.672Mus_musculus
ENSVPAG00000003525UPF3A8968.665MGP_PahariEiJ_G0021311Upf3a8468.665Mus_pahari
ENSVPAG00000003525UPF3A8969.672MGP_SPRETEiJ_G0031958Upf3a8469.672Mus_spretus
ENSVPAG00000003525UPF3A9645.274ENSMPUG00000001531UPF3B8746.883Mustela_putorius_furo
ENSVPAG00000003525UPF3A9974.458ENSMPUG00000009139UPF3A8574.458Mustela_putorius_furo
ENSVPAG00000003525UPF3A9844.125ENSMLUG00000010821UPF3B8748.921Myotis_lucifugus
ENSVPAG00000003525UPF3A10073.571ENSMLUG00000015905UPF3A9973.571Myotis_lucifugus
ENSVPAG00000003525UPF3A8968.579ENSNGAG00000019314Upf3a8468.579Nannospalax_galili
ENSVPAG00000003525UPF3A10074.083ENSNLEG00000007563UPF3A8574.083Nomascus_leucogenys
ENSVPAG00000003525UPF3A5757.759ENSNLEG00000014897UPF3B8547.395Nomascus_leucogenys
ENSVPAG00000003525UPF3A6367.063ENSOPRG00000008846-5868.254Ochotona_princeps
ENSVPAG00000003525UPF3A9845.074ENSODEG00000002186-8645.894Octodon_degus
ENSVPAG00000003525UPF3A8962.466ENSOANG00000006985-8865.396Ornithorhynchus_anatinus
ENSVPAG00000003525UPF3A5756.017ENSOANG00000002594-9343.035Ornithorhynchus_anatinus
ENSVPAG00000003525UPF3A10060.095ENSOCUG00000008450UPF3A8560.095Oryctolagus_cuniculus
ENSVPAG00000003525UPF3A6051.429ENSORLG00000001026upf3b8644.500Oryzias_latipes
ENSVPAG00000003525UPF3A9557.215ENSORLG00000010911upf3a8257.215Oryzias_latipes
ENSVPAG00000003525UPF3A9555.128ENSORLG00020014317upf3a8155.128Oryzias_latipes_hni
ENSVPAG00000003525UPF3A6051.837ENSORLG00020003758upf3b8444.898Oryzias_latipes_hni
ENSVPAG00000003525UPF3A6051.837ENSORLG00015012954upf3b8744.554Oryzias_latipes_hsok
ENSVPAG00000003525UPF3A9557.289ENSOMEG00000014425upf3a8256.812Oryzias_melastigma
ENSVPAG00000003525UPF3A5856.723ENSOMEG00000014736upf3b8744.554Oryzias_melastigma
ENSVPAG00000003525UPF3A8676.968ENSOGAG00000004788UPF3A8276.968Otolemur_garnettii
ENSVPAG00000003525UPF3A5758.190ENSOGAG00000004643-8746.283Otolemur_garnettii
ENSVPAG00000003525UPF3A9578.295ENSOARG00000009004UPF3A8278.295Ovis_aries
ENSVPAG00000003525UPF3A9442.520ENSOARG00000007869-9039.370Ovis_aries
ENSVPAG00000003525UPF3A5658.590ENSPPAG00000040390UPF3B8547.395Pan_paniscus
ENSVPAG00000003525UPF3A10073.839ENSPPAG00000042267UPF3A8673.839Pan_paniscus
ENSVPAG00000003525UPF3A9976.471ENSPPRG00000025062UPF3A8576.471Panthera_pardus
ENSVPAG00000003525UPF3A9544.307ENSPPRG00000023536UPF3B8446.633Panthera_pardus
ENSVPAG00000003525UPF3A5658.590ENSPTIG00000015264UPF3B8545.783Panthera_tigris_altaica
ENSVPAG00000003525UPF3A10060.880ENSPTRG00000051640-9260.880Pan_troglodytes
ENSVPAG00000003525UPF3A10061.369ENSPTRG00000041835-9260.147Pan_troglodytes
ENSVPAG00000003525UPF3A10062.103ENSPTRG00000041187-9162.347Pan_troglodytes
ENSVPAG00000003525UPF3A5658.590ENSPTRG00000022228UPF3B8547.395Pan_troglodytes
ENSVPAG00000003525UPF3A10073.839ENSPTRG00000006073UPF3A8673.839Pan_troglodytes
ENSVPAG00000003525UPF3A5658.590ENSPANG00000000900UPF3B7369.427Papio_anubis
ENSVPAG00000003525UPF3A10072.616ENSPANG00000004346UPF3A8572.616Papio_anubis
ENSVPAG00000003525UPF3A5863.786ENSPKIG00000019226upf3b6775.000Paramormyrops_kingsleyae
ENSVPAG00000003525UPF3A9159.517ENSPKIG00000004422upf3a8956.328Paramormyrops_kingsleyae
ENSVPAG00000003525UPF3A10067.647ENSPSIG00000007468UPF3A9967.647Pelodiscus_sinensis
ENSVPAG00000003525UPF3A9455.528ENSPMGG00000012696upf3a8155.528Periophthalmus_magnuspinnatus
ENSVPAG00000003525UPF3A8969.863ENSPEMG00000019968-8469.863Peromyscus_maniculatus_bairdii
ENSVPAG00000003525UPF3A9445.408ENSPEMG00000012352Upf3b8346.547Peromyscus_maniculatus_bairdii
ENSVPAG00000003525UPF3A9445.918ENSPCIG00000028914UPF3B8245.918Phascolarctos_cinereus
ENSVPAG00000003525UPF3A7984.239ENSPCIG00000019590-7791.304Phascolarctos_cinereus
ENSVPAG00000003525UPF3A9459.008ENSPFOG00000013222upf3a8059.115Poecilia_formosa
ENSVPAG00000003525UPF3A9457.702ENSPLAG00000011960upf3a8157.963Poecilia_latipinna
ENSVPAG00000003525UPF3A9456.219ENSPMEG00000000836upf3a8156.219Poecilia_mexicana
ENSVPAG00000003525UPF3A10074.328ENSPPYG00000005536UPF3A8674.328Pongo_abelii
ENSVPAG00000003525UPF3A6669.549ENSPCAG00000013124UPF3A5669.549Procavia_capensis
ENSVPAG00000003525UPF3A9845.169ENSPCOG00000021960UPF3B8746.283Propithecus_coquereli
ENSVPAG00000003525UPF3A9973.153ENSPVAG00000005656UPF3A8573.153Pteropus_vampyrus
ENSVPAG00000003525UPF3A5654.585ENSPNYG00000009846upf3b8744.039Pundamilia_nyererei
ENSVPAG00000003525UPF3A9544.552ENSPNAG00000021528upf3b8745.913Pygocentrus_nattereri
ENSVPAG00000003525UPF3A9558.205ENSPNAG00000019532upf3a8358.205Pygocentrus_nattereri
ENSVPAG00000003525UPF3A8670.930ENSRNOG00000017397Upf3a8170.930Rattus_norvegicus
ENSVPAG00000003525UPF3A10073.105ENSRBIG00000034007UPF3A9173.105Rhinopithecus_bieti
ENSVPAG00000003525UPF3A10073.105ENSRROG00000012212UPF3A8573.105Rhinopithecus_roxellana
ENSVPAG00000003525UPF3A5658.590ENSRROG00000041031UPF3B7369.427Rhinopithecus_roxellana
ENSVPAG00000003525UPF3A9845.763ENSSBOG00000019740UPF3B7470.323Saimiri_boliviensis_boliviensis
ENSVPAG00000003525UPF3A9270.370ENSSBOG00000029989UPF3A8570.370Saimiri_boliviensis_boliviensis
ENSVPAG00000003525UPF3A9970.270ENSSHAG00000009895UPF3A9372.165Sarcophilus_harrisii
ENSVPAG00000003525UPF3A9447.761ENSSHAG00000008634UPF3B8247.236Sarcophilus_harrisii
ENSVPAG00000003525UPF3A5859.244ENSSFOG00015005614upf3b9043.750Scleropages_formosus
ENSVPAG00000003525UPF3A9458.073ENSSFOG00015021851upf3a8057.441Scleropages_formosus
ENSVPAG00000003525UPF3A5862.963ENSSMAG00000012913upf3b8549.875Scophthalmus_maximus
ENSVPAG00000003525UPF3A10052.941ENSSDUG00000009680upf3a8156.140Seriola_dumerili
ENSVPAG00000003525UPF3A9864.925ENSSARG00000007262UPF3A9764.179Sorex_araneus
ENSVPAG00000003525UPF3A9444.337ENSSPUG00000013082UPF3B8243.909Sphenodon_punctatus
ENSVPAG00000003525UPF3A5663.983ENSSPAG00000009989upf3b8748.768Stegastes_partitus
ENSVPAG00000003525UPF3A10074.699ENSSSCG00000024679UPF3A8374.699Sus_scrofa
ENSVPAG00000003525UPF3A9844.203ENSSSCG00000012617UPF3B8745.521Sus_scrofa
ENSVPAG00000003525UPF3A9370.000ENSTGUG00000009493UPF3A9770.000Taeniopygia_guttata
ENSVPAG00000003525UPF3A9445.025ENSTGUG00000003413UPF3B9250.868Taeniopygia_guttata
ENSVPAG00000003525UPF3A9456.919ENSTRUG00000012730upf3a8156.919Takifugu_rubripes
ENSVPAG00000003525UPF3A9947.140ENSTRUG00000010645upf3b8649.626Takifugu_rubripes
ENSVPAG00000003525UPF3A9450.777ENSTNIG00000014973upf3a9650.781Tetraodon_nigroviridis
ENSVPAG00000003525UPF3A9446.954ENSTNIG00000015763upf3b8545.663Tetraodon_nigroviridis
ENSVPAG00000003525UPF3A7564.214ENSTBEG00000017186-9464.214Tupaia_belangeri
ENSVPAG00000003525UPF3A9175.269ENSTTRG00000015414UPF3A7875.269Tursiops_truncatus
ENSVPAG00000003525UPF3A9843.510ENSUAMG00000024565UPF3B7472.131Ursus_americanus
ENSVPAG00000003525UPF3A9843.826ENSUMAG00000002150UPF3B8844.499Ursus_maritimus
ENSVPAG00000003525UPF3A9971.703ENSVVUG00000013538UPF3A8471.703Vulpes_vulpes
ENSVPAG00000003525UPF3A9844.499ENSVVUG00000011594UPF3B7576.923Vulpes_vulpes
ENSVPAG00000003525UPF3A9256.233ENSXETG00000002572upf3a8756.417Xenopus_tropicalis
ENSVPAG00000003525UPF3A9544.776ENSXETG00000007440upf3b6772.258Xenopus_tropicalis
ENSVPAG00000003525UPF3A5851.464ENSXMAG00000013680upf3b9146.809Xiphophorus_maculatus
ENSVPAG00000003525UPF3A9458.747ENSXMAG00000013452upf3a8058.747Xiphophorus_maculatus

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