EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000004690 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 83443 bases
Position: chrGeneScaffold_2138:719955-803397
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000004351	XRN_N	PF03159.18	9.7e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000004690	XRN1-201	5094	-	ENSVPAP00000004351	1697 (aa)	-	UPI00018BEC58

Gene Model

Click here to download ENSVPAG00000004690's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000004690's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000004690	XRN1	100	90.328	ENSG00000114127	XRN1	100	98.182	Homo_sapiens
ENSVPAG00000004690	XRN1	100	59.583	ENSAPOG00000000622	xrn1	93	76.496	Acanthochromis_polyacanthus
ENSVPAG00000004690	XRN1	100	89.302	ENSAMEG00000012538	XRN1	100	89.302	Ailuropoda_melanoleuca
ENSVPAG00000004690	XRN1	95	69.593	ENSACIG00000001057	xrn1	99	58.951	Amphilophus_citrinellus
ENSVPAG00000004690	XRN1	100	59.215	ENSAOCG00000014097	xrn1	95	69.014	Amphiprion_ocellaris
ENSVPAG00000004690	XRN1	100	59.145	ENSAPEG00000006620	xrn1	98	60.579	Amphiprion_percula
ENSVPAG00000004690	XRN1	90	68.656	ENSATEG00000009752	xrn1	97	68.496	Anabas_testudineus
ENSVPAG00000004690	XRN1	99	72.591	ENSAPLG00000004905	XRN1	100	72.187	Anas_platyrhynchos
ENSVPAG00000004690	XRN1	100	69.480	ENSACAG00000004985	XRN1	100	69.089	Anolis_carolinensis
ENSVPAG00000004690	XRN1	100	90.217	ENSANAG00000029013	XRN1	99	91.512	Aotus_nancymaae
ENSVPAG00000004690	XRN1	100	58.512	ENSACLG00000004806	xrn1	99	58.432	Astatotilapia_calliptera
ENSVPAG00000004690	XRN1	99	58.223	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSVPAG00000004690	XRN1	100	92.082	ENSBTAG00000011524	XRN1	100	92.082	Bos_taurus
ENSVPAG00000004690	XRN1	70	38.128	WBGene00012730	xrn-1	71	40.259	Caenorhabditis_elegans
ENSVPAG00000004690	XRN1	100	90.211	ENSCJAG00000001872	XRN1	100	90.211	Callithrix_jacchus
ENSVPAG00000004690	XRN1	100	91.442	ENSCAFG00000007783	XRN1	100	91.325	Canis_familiaris
ENSVPAG00000004690	XRN1	100	89.564	ENSCAFG00020009120	XRN1	99	97.006	Canis_lupus_dingo
ENSVPAG00000004690	XRN1	99	89.023	ENSCHIG00000019192	XRN1	99	89.023	Capra_hircus
ENSVPAG00000004690	XRN1	100	89.520	ENSTSYG00000002705	XRN1	100	89.520	Carlito_syrichta
ENSVPAG00000004690	XRN1	55	76.783	ENSCAPG00000004604	-	99	76.783	Cavia_aperea
ENSVPAG00000004690	XRN1	100	90.803	ENSCCAG00000034800	XRN1	99	97.306	Cebus_capucinus
ENSVPAG00000004690	XRN1	100	90.803	ENSCATG00000041794	XRN1	100	90.803	Cercocebus_atys
ENSVPAG00000004690	XRN1	100	83.104	ENSCLAG00000001451	XRN1	99	95.880	Chinchilla_lanigera
ENSVPAG00000004690	XRN1	100	90.861	ENSCSAG00000011265	XRN1	100	90.861	Chlorocebus_sabaeus
ENSVPAG00000004690	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSVPAG00000004690	XRN1	63	50.797	ENSCSAVG00000008584	-	83	50.797	Ciona_savignyi
ENSVPAG00000004690	XRN1	100	90.973	ENSCANG00000037495	XRN1	99	97.464	Colobus_angolensis_palliatus
ENSVPAG00000004690	XRN1	100	84.174	ENSCGRG00001019411	Xrn1	99	95.880	Cricetulus_griseus_chok1gshd
ENSVPAG00000004690	XRN1	100	84.174	ENSCGRG00000012464	Xrn1	99	95.880	Cricetulus_griseus_crigri
ENSVPAG00000004690	XRN1	100	53.971	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSVPAG00000004690	XRN1	66	65.817	ENSCVAG00000013089	xrn1	99	69.346	Cyprinodon_variegatus
ENSVPAG00000004690	XRN1	99	60.969	ENSDARG00000091652	xrn1	98	79.747	Danio_rerio
ENSVPAG00000004690	XRN1	100	83.314	ENSDORG00000013833	Xrn1	100	83.257	Dipodomys_ordii
ENSVPAG00000004690	XRN1	74	38.162	FBgn0020261	pcm	76	38.158	Drosophila_melanogaster
ENSVPAG00000004690	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	98.387	Echinops_telfairi
ENSVPAG00000004690	XRN1	100	90.510	ENSEASG00005002687	XRN1	99	96.197	Equus_asinus_asinus
ENSVPAG00000004690	XRN1	100	90.510	ENSECAG00000008301	XRN1	100	90.510	Equus_caballus
ENSVPAG00000004690	XRN1	93	82.975	ENSEEUG00000011323	XRN1	92	82.975	Erinaceus_europaeus
ENSVPAG00000004690	XRN1	100	59.274	ENSELUG00000000169	xrn1	100	58.937	Esox_lucius
ENSVPAG00000004690	XRN1	100	87.588	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSVPAG00000004690	XRN1	100	71.261	ENSFALG00000007021	XRN1	100	70.592	Ficedula_albicollis
ENSVPAG00000004690	XRN1	100	84.765	ENSFDAG00000020494	XRN1	99	95.246	Fukomys_damarensis
ENSVPAG00000004690	XRN1	84	65.410	ENSGMOG00000006396	xrn1	83	64.740	Gadus_morhua
ENSVPAG00000004690	XRN1	100	71.381	ENSGALG00000002706	XRN1	100	70.989	Gallus_gallus
ENSVPAG00000004690	XRN1	100	57.957	ENSGACG00000014328	xrn1	100	57.889	Gasterosteus_aculeatus
ENSVPAG00000004690	XRN1	95	74.446	ENSGAGG00000017535	XRN1	99	74.147	Gopherus_agassizii
ENSVPAG00000004690	XRN1	100	90.451	ENSGGOG00000008047	XRN1	100	90.451	Gorilla_gorilla
ENSVPAG00000004690	XRN1	100	58.210	ENSHBUG00000005908	xrn1	98	73.045	Haplochromis_burtoni
ENSVPAG00000004690	XRN1	100	85.575	ENSHGLG00000014476	XRN1	99	96.038	Heterocephalus_glaber_female
ENSVPAG00000004690	XRN1	100	85.575	ENSHGLG00100015130	XRN1	99	96.038	Heterocephalus_glaber_male
ENSVPAG00000004690	XRN1	97	68.283	ENSHCOG00000014062	xrn1	99	67.502	Hippocampus_comes
ENSVPAG00000004690	XRN1	99	59.529	ENSIPUG00000015229	xrn1	97	60.461	Ictalurus_punctatus
ENSVPAG00000004690	XRN1	100	87.564	ENSSTOG00000013552	XRN1	99	96.830	Ictidomys_tridecemlineatus
ENSVPAG00000004690	XRN1	98	82.510	ENSJJAG00000010863	Xrn1	99	93.548	Jaculus_jaculus
ENSVPAG00000004690	XRN1	94	59.455	ENSKMAG00000021356	xrn1	94	75.840	Kryptolebias_marmoratus
ENSVPAG00000004690	XRN1	100	58.456	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSVPAG00000004690	XRN1	100	66.629	ENSLACG00000009020	XRN1	100	66.232	Latimeria_chalumnae
ENSVPAG00000004690	XRN1	100	63.037	ENSLOCG00000007944	xrn1	98	63.038	Lepisosteus_oculatus
ENSVPAG00000004690	XRN1	63	95.510	ENSLAFG00000015426	XRN1	100	95.510	Loxodonta_africana
ENSVPAG00000004690	XRN1	100	90.920	ENSMFAG00000032599	XRN1	100	90.920	Macaca_fascicularis
ENSVPAG00000004690	XRN1	100	90.861	ENSMMUG00000014038	XRN1	100	90.861	Macaca_mulatta
ENSVPAG00000004690	XRN1	100	90.685	ENSMNEG00000034217	XRN1	100	90.685	Macaca_nemestrina
ENSVPAG00000004690	XRN1	89	68.375	ENSMAMG00000013219	xrn1	94	76.653	Mastacembelus_armatus
ENSVPAG00000004690	XRN1	100	58.465	ENSMZEG00005015099	xrn1	99	58.249	Maylandia_zebra
ENSVPAG00000004690	XRN1	99	71.247	ENSMGAG00000006333	XRN1	100	70.843	Meleagris_gallopavo
ENSVPAG00000004690	XRN1	100	90.526	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSVPAG00000004690	XRN1	57	94.770	ENSMOCG00000008665	Xrn1	99	94.770	Microtus_ochrogaster
ENSVPAG00000004690	XRN1	100	79.802	ENSMODG00000021236	XRN1	100	79.510	Monodelphis_domestica
ENSVPAG00000004690	XRN1	100	55.392	ENSMALG00000004098	xrn1	100	55.296	Monopterus_albus
ENSVPAG00000004690	XRN1	96	94.629	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSVPAG00000004690	XRN1	100	82.798	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSVPAG00000004690	XRN1	100	82.913	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSVPAG00000004690	XRN1	100	82.798	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSVPAG00000004690	XRN1	100	91.852	ENSMPUG00000012040	XRN1	100	91.852	Mustela_putorius_furo
ENSVPAG00000004690	XRN1	100	86.648	ENSMLUG00000016885	XRN1	100	86.533	Myotis_lucifugus
ENSVPAG00000004690	XRN1	58	90.952	ENSNGAG00000023964	Xrn1	99	91.242	Nannospalax_galili
ENSVPAG00000004690	XRN1	100	90.914	ENSNLEG00000004726	XRN1	100	90.914	Nomascus_leucogenys
ENSVPAG00000004690	XRN1	77	98.969	ENSMEUG00000014473	-	77	99.029	Notamacropus_eugenii
ENSVPAG00000004690	XRN1	78	84.665	ENSOPRG00000007337	-	78	84.665	Ochotona_princeps
ENSVPAG00000004690	XRN1	100	59.954	ENSONIG00000016673	xrn1	99	62.645	Oreochromis_niloticus
ENSVPAG00000004690	XRN1	92	74.289	ENSOANG00000006735	XRN1	100	74.226	Ornithorhynchus_anatinus
ENSVPAG00000004690	XRN1	100	86.812	ENSOCUG00000001861	XRN1	100	86.640	Oryctolagus_cuniculus
ENSVPAG00000004690	XRN1	100	59.145	ENSORLG00000013005	xrn1	100	58.324	Oryzias_latipes
ENSVPAG00000004690	XRN1	100	59.230	ENSORLG00020005559	xrn1	100	59.199	Oryzias_latipes_hni
ENSVPAG00000004690	XRN1	100	58.737	ENSORLG00015022523	xrn1	100	58.737	Oryzias_latipes_hsok
ENSVPAG00000004690	XRN1	95	70.147	ENSOMEG00000015397	xrn1	100	70.090	Oryzias_melastigma
ENSVPAG00000004690	XRN1	100	87.698	ENSOGAG00000000170	XRN1	100	87.698	Otolemur_garnettii
ENSVPAG00000004690	XRN1	99	92.366	ENSOARG00000006343	XRN1	99	92.366	Ovis_aries
ENSVPAG00000004690	XRN1	100	90.217	ENSPPAG00000010180	XRN1	100	90.217	Pan_paniscus
ENSVPAG00000004690	XRN1	100	91.042	ENSPPRG00000007125	XRN1	100	91.042	Panthera_pardus
ENSVPAG00000004690	XRN1	100	91.042	ENSPTIG00000021081	XRN1	100	91.042	Panthera_tigris_altaica
ENSVPAG00000004690	XRN1	100	90.275	ENSPTRG00000015482	XRN1	100	90.275	Pan_troglodytes
ENSVPAG00000004690	XRN1	100	90.744	ENSPANG00000010638	XRN1	100	90.744	Papio_anubis
ENSVPAG00000004690	XRN1	100	73.568	ENSPSIG00000018050	XRN1	100	73.454	Pelodiscus_sinensis
ENSVPAG00000004690	XRN1	57	77.516	ENSPMGG00000002648	xrn1	98	76.995	Periophthalmus_magnuspinnatus
ENSVPAG00000004690	XRN1	57	95.404	ENSPEMG00000020610	Xrn1	99	95.707	Peromyscus_maniculatus_bairdii
ENSVPAG00000004690	XRN1	61	49.466	ENSPMAG00000002975	xrn1	85	78.448	Petromyzon_marinus
ENSVPAG00000004690	XRN1	100	79.009	ENSPCIG00000028735	XRN1	99	89.540	Phascolarctos_cinereus
ENSVPAG00000004690	XRN1	90	62.076	ENSPFOG00000013932	xrn1	99	62.292	Poecilia_formosa
ENSVPAG00000004690	XRN1	90	61.802	ENSPLAG00000021653	xrn1	99	62.167	Poecilia_latipinna
ENSVPAG00000004690	XRN1	88	62.006	ENSPMEG00000003076	xrn1	95	62.225	Poecilia_mexicana
ENSVPAG00000004690	XRN1	100	58.720	ENSPREG00000021147	xrn1	100	58.864	Poecilia_reticulata
ENSVPAG00000004690	XRN1	100	90.387	ENSPPYG00000014172	XRN1	100	90.387	Pongo_abelii
ENSVPAG00000004690	XRN1	90	79.080	ENSPCAG00000005638	XRN1	99	79.104	Procavia_capensis
ENSVPAG00000004690	XRN1	100	90.861	ENSPCOG00000013089	XRN1	99	96.672	Propithecus_coquereli
ENSVPAG00000004690	XRN1	96	87.771	ENSPVAG00000016265	XRN1	96	87.771	Pteropus_vampyrus
ENSVPAG00000004690	XRN1	100	58.786	ENSPNYG00000010570	xrn1	95	60.133	Pundamilia_nyererei
ENSVPAG00000004690	XRN1	99	58.042	ENSPNAG00000023531	xrn1	97	58.377	Pygocentrus_nattereri
ENSVPAG00000004690	XRN1	100	83.716	ENSRNOG00000042951	Xrn1	100	83.601	Rattus_norvegicus
ENSVPAG00000004690	XRN1	100	90.275	ENSRBIG00000041227	XRN1	100	90.275	Rhinopithecus_bieti
ENSVPAG00000004690	XRN1	59	54.768	YGL173C	XRN1	64	54.768	Saccharomyces_cerevisiae
ENSVPAG00000004690	XRN1	100	90.211	ENSSBOG00000029561	XRN1	100	90.211	Saimiri_boliviensis_boliviensis
ENSVPAG00000004690	XRN1	99	78.770	ENSSHAG00000016207	XRN1	100	78.415	Sarcophilus_harrisii
ENSVPAG00000004690	XRN1	100	58.982	ENSSFOG00015024211	xrn1	96	60.601	Scleropages_formosus
ENSVPAG00000004690	XRN1	95	66.973	ENSSMAG00000016534	xrn1	100	66.897	Scophthalmus_maximus
ENSVPAG00000004690	XRN1	91	69.976	ENSSDUG00000010306	xrn1	97	69.976	Seriola_dumerili
ENSVPAG00000004690	XRN1	95	68.302	ENSSLDG00000021543	xrn1	100	68.302	Seriola_lalandi_dorsalis
ENSVPAG00000004690	XRN1	68	85.212	ENSSARG00000007741	-	83	85.212	Sorex_araneus
ENSVPAG00000004690	XRN1	100	74.027	ENSTGUG00000008498	XRN1	100	73.504	Taeniopygia_guttata
ENSVPAG00000004690	XRN1	100	56.494	ENSTRUG00000004895	xrn1	96	77.350	Takifugu_rubripes
ENSVPAG00000004690	XRN1	96	65.605	ENSTNIG00000017615	xrn1	100	56.300	Tetraodon_nigroviridis
ENSVPAG00000004690	XRN1	89	87.400	ENSTBEG00000003256	XRN1	89	87.400	Tupaia_belangeri
ENSVPAG00000004690	XRN1	100	90.317	ENSTTRG00000012914	XRN1	100	90.082	Tursiops_truncatus
ENSVPAG00000004690	XRN1	100	90.925	ENSUAMG00000001608	XRN1	99	97.006	Ursus_americanus
ENSVPAG00000004690	XRN1	100	92.799	ENSUMAG00000013625	XRN1	100	92.799	Ursus_maritimus
ENSVPAG00000004690	XRN1	100	92.443	ENSVVUG00000024461	XRN1	99	97.147	Vulpes_vulpes
ENSVPAG00000004690	XRN1	100	67.093	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSVPAG00000004690	XRN1	100	59.393	ENSXCOG00000007917	xrn1	100	59.344	Xiphophorus_couchianus
ENSVPAG00000004690	XRN1	93	69.005	ENSXMAG00000018320	xrn1	98	69.086	Xiphophorus_maculatus