EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000005507 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Plus strand
Length: 30086 bases
Position: chrGeneScaffold_2496:519652-549737
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000005118	TruB_N	PF01509.18	8e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000005507	TRUB1-201	1047	-	ENSVPAP00000005118	349 (aa)	-	UPI00018BEC49

Gene Model

Click here to download ENSVPAG00000005507's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000005507's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000005507	TRUB1	99	92.264	ENSG00000165832	TRUB1	99	92.264	Homo_sapiens
ENSVPAG00000005507	TRUB1	70	68.980	ENSAPOG00000020565	trub1	89	68.699	Acanthochromis_polyacanthus
ENSVPAG00000005507	TRUB1	96	93.491	ENSAMEG00000014931	TRUB1	99	93.447	Ailuropoda_melanoleuca
ENSVPAG00000005507	TRUB1	81	59.155	ENSACIG00000003060	trub1	94	59.155	Amphilophus_citrinellus
ENSVPAG00000005507	TRUB1	70	68.980	ENSAOCG00000017188	trub1	91	67.984	Amphiprion_ocellaris
ENSVPAG00000005507	TRUB1	70	68.293	ENSAPEG00000015209	trub1	89	68.293	Amphiprion_percula
ENSVPAG00000005507	TRUB1	69	69.295	ENSATEG00000023291	trub1	86	69.295	Anabas_testudineus
ENSVPAG00000005507	TRUB1	78	77.941	ENSAPLG00000006808	TRUB1	97	77.941	Anas_platyrhynchos
ENSVPAG00000005507	TRUB1	77	72.119	ENSACAG00000009282	TRUB1	97	72.119	Anolis_carolinensis
ENSVPAG00000005507	TRUB1	95	93.713	ENSANAG00000022870	TRUB1	99	92.837	Aotus_nancymaae
ENSVPAG00000005507	TRUB1	72	67.460	ENSACLG00000000823	trub1	91	67.460	Astatotilapia_calliptera
ENSVPAG00000005507	TRUB1	75	67.050	ENSAMXG00000015845	trub1	87	67.050	Astyanax_mexicanus
ENSVPAG00000005507	TRUB1	97	94.412	ENSBTAG00000012955	TRUB1	100	93.182	Bos_taurus
ENSVPAG00000005507	TRUB1	99	92.571	ENSCJAG00000047815	TRUB1	99	92.571	Callithrix_jacchus
ENSVPAG00000005507	TRUB1	99	93.696	ENSCAFG00000011688	TRUB1	99	93.696	Canis_familiaris
ENSVPAG00000005507	TRUB1	99	93.983	ENSCAFG00020013237	TRUB1	99	93.983	Canis_lupus_dingo
ENSVPAG00000005507	TRUB1	97	94.412	ENSCHIG00000020884	TRUB1	100	93.732	Capra_hircus
ENSVPAG00000005507	TRUB1	99	91.143	ENSTSYG00000000446	TRUB1	99	90.000	Carlito_syrichta
ENSVPAG00000005507	TRUB1	72	83.399	ENSCAPG00000017088	TRUB1	99	83.399	Cavia_aperea
ENSVPAG00000005507	TRUB1	71	78.629	ENSCPOG00000030129	-	86	77.419	Cavia_porcellus
ENSVPAG00000005507	TRUB1	70	84.082	ENSCPOG00000040236	-	100	84.082	Cavia_porcellus
ENSVPAG00000005507	TRUB1	96	92.857	ENSCCAG00000028842	TRUB1	99	91.714	Cebus_capucinus
ENSVPAG00000005507	TRUB1	99	92.837	ENSCATG00000033431	TRUB1	99	92.837	Cercocebus_atys
ENSVPAG00000005507	TRUB1	70	88.571	ENSCLAG00000008664	TRUB1	100	88.571	Chinchilla_lanigera
ENSVPAG00000005507	TRUB1	99	93.123	ENSCSAG00000004891	TRUB1	99	93.123	Chlorocebus_sabaeus
ENSVPAG00000005507	TRUB1	100	78.510	ENSCHOG00000011931	TRUB1	100	78.510	Choloepus_hoffmanni
ENSVPAG00000005507	TRUB1	78	81.250	ENSCPBG00000003051	TRUB1	94	81.250	Chrysemys_picta_bellii
ENSVPAG00000005507	TRUB1	99	93.123	ENSCANG00000029445	TRUB1	99	93.123	Colobus_angolensis_palliatus
ENSVPAG00000005507	TRUB1	73	87.059	ENSCGRG00001016772	-	90	78.523	Cricetulus_griseus_chok1gshd
ENSVPAG00000005507	TRUB1	80	80.071	ENSCGRG00001010322	-	80	79.661	Cricetulus_griseus_chok1gshd
ENSVPAG00000005507	TRUB1	80	88.256	ENSCGRG00000010806	Trub1	91	87.248	Cricetulus_griseus_crigri
ENSVPAG00000005507	TRUB1	73	63.281	ENSCSEG00000011261	trub1	83	63.281	Cynoglossus_semilaevis
ENSVPAG00000005507	TRUB1	70	68.163	ENSCVAG00000008791	trub1	75	68.163	Cyprinodon_variegatus
ENSVPAG00000005507	TRUB1	75	66.540	ENSDARG00000053805	trub1	90	66.540	Danio_rerio
ENSVPAG00000005507	TRUB1	97	86.765	ENSDNOG00000001069	TRUB1	100	86.286	Dasypus_novemcinctus
ENSVPAG00000005507	TRUB1	100	88.000	ENSDORG00000010431	Trub1	100	87.714	Dipodomys_ordii
ENSVPAG00000005507	TRUB1	81	79.412	ENSETEG00000009183	TRUB1	81	80.392	Echinops_telfairi
ENSVPAG00000005507	TRUB1	96	94.065	ENSEASG00005014739	TRUB1	100	94.000	Equus_asinus_asinus
ENSVPAG00000005507	TRUB1	96	94.065	ENSECAG00000007177	TRUB1	100	94.000	Equus_caballus
ENSVPAG00000005507	TRUB1	100	75.766	ENSEEUG00000013993	TRUB1	98	77.054	Erinaceus_europaeus
ENSVPAG00000005507	TRUB1	70	70.204	ENSELUG00000000502	trub1	86	70.204	Esox_lucius
ENSVPAG00000005507	TRUB1	96	94.030	ENSFCAG00000031927	TRUB1	99	93.678	Felis_catus
ENSVPAG00000005507	TRUB1	69	78.333	ENSFALG00000002232	TRUB1	92	78.333	Ficedula_albicollis
ENSVPAG00000005507	TRUB1	70	86.939	ENSFDAG00000008140	TRUB1	100	86.939	Fukomys_damarensis
ENSVPAG00000005507	TRUB1	70	66.939	ENSFHEG00000004016	trub1	89	64.231	Fundulus_heteroclitus
ENSVPAG00000005507	TRUB1	78	76.103	ENSGALG00000009091	TRUB1	97	75.472	Gallus_gallus
ENSVPAG00000005507	TRUB1	68	65.417	ENSGAFG00000009193	trub1	86	64.754	Gambusia_affinis
ENSVPAG00000005507	TRUB1	56	68.718	ENSGACG00000015387	trub1	96	68.718	Gasterosteus_aculeatus
ENSVPAG00000005507	TRUB1	90	74.204	ENSGAGG00000009758	TRUB1	82	78.671	Gopherus_agassizii
ENSVPAG00000005507	TRUB1	99	93.410	ENSGGOG00000004583	TRUB1	99	93.410	Gorilla_gorilla
ENSVPAG00000005507	TRUB1	72	67.460	ENSHBUG00000016787	trub1	91	67.460	Haplochromis_burtoni
ENSVPAG00000005507	TRUB1	100	86.286	ENSHGLG00000015314	TRUB1	100	86.286	Heterocephalus_glaber_female
ENSVPAG00000005507	TRUB1	70	85.714	ENSHGLG00100009183	TRUB1	100	85.714	Heterocephalus_glaber_male
ENSVPAG00000005507	TRUB1	70	68.571	ENSHCOG00000017877	trub1	89	68.571	Hippocampus_comes
ENSVPAG00000005507	TRUB1	77	66.667	ENSIPUG00000017559	trub1	94	66.667	Ictalurus_punctatus
ENSVPAG00000005507	TRUB1	86	93.377	ENSSTOG00000003641	TRUB1	100	87.143	Ictidomys_tridecemlineatus
ENSVPAG00000005507	TRUB1	100	83.429	ENSJJAG00000011800	Trub1	100	83.429	Jaculus_jaculus
ENSVPAG00000005507	TRUB1	72	66.148	ENSKMAG00000006232	trub1	88	67.886	Kryptolebias_marmoratus
ENSVPAG00000005507	TRUB1	76	64.684	ENSLBEG00000026722	trub1	94	64.684	Labrus_bergylta
ENSVPAG00000005507	TRUB1	79	73.551	ENSLACG00000014885	TRUB1	92	73.551	Latimeria_chalumnae
ENSVPAG00000005507	TRUB1	78	71.062	ENSLOCG00000012979	trub1	93	71.062	Lepisosteus_oculatus
ENSVPAG00000005507	TRUB1	99	80.952	ENSLAFG00000015452	TRUB1	99	81.793	Loxodonta_africana
ENSVPAG00000005507	TRUB1	99	92.837	ENSMFAG00000031767	TRUB1	99	92.837	Macaca_fascicularis
ENSVPAG00000005507	TRUB1	99	93.123	ENSMMUG00000001902	TRUB1	99	93.123	Macaca_mulatta
ENSVPAG00000005507	TRUB1	99	89.112	ENSMNEG00000044646	TRUB1	99	89.112	Macaca_nemestrina
ENSVPAG00000005507	TRUB1	99	92.837	ENSMLEG00000042655	TRUB1	99	92.837	Mandrillus_leucophaeus
ENSVPAG00000005507	TRUB1	72	67.460	ENSMZEG00005024095	trub1	91	67.460	Maylandia_zebra
ENSVPAG00000005507	TRUB1	78	75.368	ENSMGAG00000011135	TRUB1	93	75.368	Meleagris_gallopavo
ENSVPAG00000005507	TRUB1	85	84.615	ENSMAUG00000011101	Trub1	89	84.718	Mesocricetus_auratus
ENSVPAG00000005507	TRUB1	100	93.143	ENSMICG00000016324	TRUB1	100	93.143	Microcebus_murinus
ENSVPAG00000005507	TRUB1	93	82.209	ENSMOCG00000017759	Trub1	91	86.093	Microtus_ochrogaster
ENSVPAG00000005507	TRUB1	82	83.158	ENSMODG00000009676	TRUB1	81	81.356	Monodelphis_domestica
ENSVPAG00000005507	TRUB1	100	79.714	MGP_CAROLIEiJ_G0023100	Trub1	100	78.571	Mus_caroli
ENSVPAG00000005507	TRUB1	100	78.571	ENSMUSG00000025086	Trub1	100	77.429	Mus_musculus
ENSVPAG00000005507	TRUB1	100	79.429	MGP_PahariEiJ_G0014588	Trub1	100	79.143	Mus_pahari
ENSVPAG00000005507	TRUB1	100	78.857	MGP_SPRETEiJ_G0024021	Trub1	100	77.714	Mus_spretus
ENSVPAG00000005507	TRUB1	96	94.345	ENSMPUG00000003556	TRUB1	99	94.269	Mustela_putorius_furo
ENSVPAG00000005507	TRUB1	94	87.538	ENSMLUG00000017686	TRUB1	98	86.377	Myotis_lucifugus
ENSVPAG00000005507	TRUB1	100	85.429	ENSNGAG00000018682	Trub1	100	85.429	Nannospalax_galili
ENSVPAG00000005507	TRUB1	70	68.699	ENSNBRG00000023393	trub1	88	68.699	Neolamprologus_brichardi
ENSVPAG00000005507	TRUB1	96	92.560	ENSNLEG00000016345	TRUB1	99	92.264	Nomascus_leucogenys
ENSVPAG00000005507	TRUB1	58	91.045	ENSMEUG00000006603	TRUB1	78	88.152	Notamacropus_eugenii
ENSVPAG00000005507	TRUB1	86	86.093	ENSOPRG00000009371	TRUB1	88	86.093	Ochotona_princeps
ENSVPAG00000005507	TRUB1	100	83.429	ENSODEG00000010854	TRUB1	100	83.429	Octodon_degus
ENSVPAG00000005507	TRUB1	70	68.293	ENSONIG00000007249	trub1	89	68.293	Oreochromis_niloticus
ENSVPAG00000005507	TRUB1	79	81.387	ENSOANG00000001556	TRUB1	90	81.387	Ornithorhynchus_anatinus
ENSVPAG00000005507	TRUB1	100	83.143	ENSOCUG00000009456	TRUB1	100	83.143	Oryctolagus_cuniculus
ENSVPAG00000005507	TRUB1	69	69.295	ENSORLG00000029719	trub1	86	69.295	Oryzias_latipes
ENSVPAG00000005507	TRUB1	69	68.880	ENSORLG00020016767	trub1	85	68.880	Oryzias_latipes_hni
ENSVPAG00000005507	TRUB1	69	68.880	ENSORLG00015014728	trub1	86	68.880	Oryzias_latipes_hsok
ENSVPAG00000005507	TRUB1	69	68.595	ENSOMEG00000014556	trub1	85	68.595	Oryzias_melastigma
ENSVPAG00000005507	TRUB1	100	93.429	ENSOGAG00000015895	TRUB1	100	93.429	Otolemur_garnettii
ENSVPAG00000005507	TRUB1	97	90.751	ENSOARG00000015591	TRUB1	100	89.916	Ovis_aries
ENSVPAG00000005507	TRUB1	99	92.837	ENSPPAG00000043645	TRUB1	99	92.837	Pan_paniscus
ENSVPAG00000005507	TRUB1	96	93.433	ENSPPRG00000007096	TRUB1	99	93.103	Panthera_pardus
ENSVPAG00000005507	TRUB1	96	93.731	ENSPTIG00000006378	TRUB1	99	93.391	Panthera_tigris_altaica
ENSVPAG00000005507	TRUB1	99	92.837	ENSPTRG00000002964	TRUB1	99	92.837	Pan_troglodytes
ENSVPAG00000005507	TRUB1	99	92.837	ENSPANG00000020712	TRUB1	99	92.837	Papio_anubis
ENSVPAG00000005507	TRUB1	78	78.676	ENSPSIG00000012877	TRUB1	93	78.676	Pelodiscus_sinensis
ENSVPAG00000005507	TRUB1	70	65.714	ENSPMGG00000000075	trub1	88	65.714	Periophthalmus_magnuspinnatus
ENSVPAG00000005507	TRUB1	86	84.718	ENSPEMG00000011156	Trub1	89	84.718	Peromyscus_maniculatus_bairdii
ENSVPAG00000005507	TRUB1	81	82.918	ENSPCIG00000009729	TRUB1	79	81.507	Phascolarctos_cinereus
ENSVPAG00000005507	TRUB1	70	66.531	ENSPFOG00000009950	trub1	90	66.531	Poecilia_formosa
ENSVPAG00000005507	TRUB1	70	66.531	ENSPLAG00000013855	trub1	86	66.531	Poecilia_latipinna
ENSVPAG00000005507	TRUB1	70	66.531	ENSPMEG00000009064	trub1	88	66.531	Poecilia_mexicana
ENSVPAG00000005507	TRUB1	70	67.347	ENSPREG00000003343	trub1	88	67.347	Poecilia_reticulata
ENSVPAG00000005507	TRUB1	96	92.857	ENSPPYG00000002676	TRUB1	99	92.550	Pongo_abelii
ENSVPAG00000005507	TRUB1	99	76.420	ENSPCAG00000008427	TRUB1	99	76.136	Procavia_capensis
ENSVPAG00000005507	TRUB1	100	88.857	ENSPCOG00000024360	TRUB1	100	88.857	Propithecus_coquereli
ENSVPAG00000005507	TRUB1	76	93.561	ENSPVAG00000007575	TRUB1	100	93.561	Pteropus_vampyrus
ENSVPAG00000005507	TRUB1	72	67.460	ENSPNYG00000018614	trub1	91	67.460	Pundamilia_nyererei
ENSVPAG00000005507	TRUB1	74	59.615	ENSPNAG00000006881	trub1	84	59.615	Pygocentrus_nattereri
ENSVPAG00000005507	TRUB1	100	80.571	ENSRNOG00000017321	Trub1	89	86.093	Rattus_norvegicus
ENSVPAG00000005507	TRUB1	99	82.808	ENSRBIG00000033423	TRUB1	99	82.808	Rhinopithecus_bieti
ENSVPAG00000005507	TRUB1	99	92.550	ENSRROG00000033902	TRUB1	99	92.550	Rhinopithecus_roxellana
ENSVPAG00000005507	TRUB1	96	93.155	ENSSBOG00000024237	TRUB1	99	92.000	Saimiri_boliviensis_boliviensis
ENSVPAG00000005507	TRUB1	71	81.673	ENSSHAG00000009346	TRUB1	84	81.673	Sarcophilus_harrisii
ENSVPAG00000005507	TRUB1	70	70.370	ENSSFOG00015022124	trub1	83	70.370	Scleropages_formosus
ENSVPAG00000005507	TRUB1	70	69.106	ENSSMAG00000001020	trub1	88	69.106	Scophthalmus_maximus
ENSVPAG00000005507	TRUB1	69	69.583	ENSSDUG00000016414	trub1	88	69.512	Seriola_dumerili
ENSVPAG00000005507	TRUB1	69	70.000	ENSSLDG00000015486	trub1	88	69.919	Seriola_lalandi_dorsalis
ENSVPAG00000005507	TRUB1	78	79.412	ENSSPUG00000001642	TRUB1	96	77.778	Sphenodon_punctatus
ENSVPAG00000005507	TRUB1	75	66.920	ENSSPAG00000001217	trub1	94	66.920	Stegastes_partitus
ENSVPAG00000005507	TRUB1	100	89.714	ENSSSCG00000010653	TRUB1	100	89.714	Sus_scrofa
ENSVPAG00000005507	TRUB1	77	77.778	ENSTGUG00000010971	TRUB1	97	77.574	Taeniopygia_guttata
ENSVPAG00000005507	TRUB1	72	77.075	ENSTBEG00000002880	TRUB1	99	77.075	Tupaia_belangeri
ENSVPAG00000005507	TRUB1	72	90.837	ENSTTRG00000005767	TRUB1	100	94.697	Tursiops_truncatus
ENSVPAG00000005507	TRUB1	96	95.536	ENSUAMG00000024876	TRUB1	99	95.129	Ursus_americanus
ENSVPAG00000005507	TRUB1	84	96.610	ENSUMAG00000002411	TRUB1	99	91.117	Ursus_maritimus
ENSVPAG00000005507	TRUB1	99	92.550	ENSVVUG00000010085	TRUB1	83	93.123	Vulpes_vulpes
ENSVPAG00000005507	TRUB1	78	66.176	ENSXETG00000023828	trub1	98	66.176	Xenopus_tropicalis
ENSVPAG00000005507	TRUB1	68	66.109	ENSXCOG00000017847	trub1	86	65.432	Xiphophorus_couchianus
ENSVPAG00000005507	TRUB1	70	65.714	ENSXMAG00000014701	trub1	88	65.714	Xiphophorus_maculatus