EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000005798 (Gene tree)
Gene ID: -
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 38065 bases
Position: chrGeneScaffold_969:26463-64527
Accession: 10768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000005384	SF3b1	PF08920.10	1.3e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000005799	SF3B1-201	3912	-	ENSVPAP00000005384	1303 (aa)	-	UPI00018BD820

Gene Model

Click here to download ENSVPAG00000005798's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000005798's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000005798	SF3B1	100	91.871	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSVPAG00000005798	SF3B1	96	93.561	ENSAPOG00000011894	sf3b1	95	93.561	Acanthochromis_polyacanthus
ENSVPAG00000005798	SF3B1	99	91.744	ENSAMEG00000013809	SF3B1	99	91.744	Ailuropoda_melanoleuca
ENSVPAG00000005798	SF3B1	96	92.683	ENSACIG00000020910	sf3b1	92	92.683	Amphilophus_citrinellus
ENSVPAG00000005798	SF3B1	96	93.561	ENSAOCG00000004478	sf3b1	95	93.561	Amphiprion_ocellaris
ENSVPAG00000005798	SF3B1	96	93.561	ENSAPEG00000012937	sf3b1	95	93.561	Amphiprion_percula
ENSVPAG00000005798	SF3B1	96	93.463	ENSATEG00000020435	sf3b1	95	93.542	Anabas_testudineus
ENSVPAG00000005798	SF3B1	95	97.183	ENSAPLG00000003993	SF3B1	95	97.183	Anas_platyrhynchos
ENSVPAG00000005798	SF3B1	100	90.798	ENSACAG00000009612	SF3B1	100	90.798	Anolis_carolinensis
ENSVPAG00000005798	SF3B1	100	91.871	ENSANAG00000021577	SF3B1	100	91.871	Aotus_nancymaae
ENSVPAG00000005798	SF3B1	96	92.683	ENSACLG00000023470	sf3b1	95	92.683	Astatotilapia_calliptera
ENSVPAG00000005798	SF3B1	96	93.561	ENSAMXG00000002219	sf3b1	95	93.561	Astyanax_mexicanus
ENSVPAG00000005798	SF3B1	100	91.794	ENSBTAG00000008915	SF3B1	100	91.794	Bos_taurus
ENSVPAG00000005798	SF3B1	88	78.535	WBGene00011605	sftb-1	87	78.638	Caenorhabditis_elegans
ENSVPAG00000005798	SF3B1	100	91.871	ENSCJAG00000003902	SF3B1	100	91.871	Callithrix_jacchus
ENSVPAG00000005798	SF3B1	100	91.871	ENSCAFG00000010826	SF3B1	100	91.871	Canis_familiaris
ENSVPAG00000005798	SF3B1	100	91.871	ENSCAFG00020004750	SF3B1	100	91.871	Canis_lupus_dingo
ENSVPAG00000005798	SF3B1	100	91.794	ENSCHIG00000015226	SF3B1	100	91.794	Capra_hircus
ENSVPAG00000005798	SF3B1	100	91.794	ENSTSYG00000009214	SF3B1	100	91.794	Carlito_syrichta
ENSVPAG00000005798	SF3B1	99	91.692	ENSCAPG00000006547	SF3B1	99	91.692	Cavia_aperea
ENSVPAG00000005798	SF3B1	99	91.808	ENSCPOG00000009353	SF3B1	100	91.808	Cavia_porcellus
ENSVPAG00000005798	SF3B1	100	91.871	ENSCCAG00000020506	SF3B1	100	91.871	Cebus_capucinus
ENSVPAG00000005798	SF3B1	100	91.871	ENSCATG00000035735	SF3B1	100	91.871	Cercocebus_atys
ENSVPAG00000005798	SF3B1	99	91.815	ENSCLAG00000014767	SF3B1	99	91.815	Chinchilla_lanigera
ENSVPAG00000005798	SF3B1	100	91.871	ENSCSAG00000011505	SF3B1	100	91.871	Chlorocebus_sabaeus
ENSVPAG00000005798	SF3B1	73	98.462	ENSCHOG00000009860	SF3B1	72	98.438	Choloepus_hoffmanni
ENSVPAG00000005798	SF3B1	96	96.847	ENSCPBG00000021902	SF3B1	96	96.847	Chrysemys_picta_bellii
ENSVPAG00000005798	SF3B1	64	81.498	ENSCING00000002558	-	92	81.498	Ciona_intestinalis
ENSVPAG00000005798	SF3B1	95	84.308	ENSCSAVG00000002559	-	98	84.241	Ciona_savignyi
ENSVPAG00000005798	SF3B1	100	91.871	ENSCANG00000029415	SF3B1	100	91.871	Colobus_angolensis_palliatus
ENSVPAG00000005798	SF3B1	100	91.871	ENSCGRG00001016990	Sf3b1	100	91.871	Cricetulus_griseus_chok1gshd
ENSVPAG00000005798	SF3B1	100	91.871	ENSCGRG00000005301	Sf3b1	100	91.871	Cricetulus_griseus_crigri
ENSVPAG00000005798	SF3B1	96	89.073	ENSCSEG00000003860	sf3b1	95	89.073	Cynoglossus_semilaevis
ENSVPAG00000005798	SF3B1	92	93.628	ENSCVAG00000003680	sf3b1	94	93.628	Cyprinodon_variegatus
ENSVPAG00000005798	SF3B1	96	93.463	ENSDARG00000056138	sf3b1	95	93.463	Danio_rerio
ENSVPAG00000005798	SF3B1	100	91.801	ENSDNOG00000011754	SF3B1	100	91.801	Dasypus_novemcinctus
ENSVPAG00000005798	SF3B1	99	89.112	ENSDORG00000002399	Sf3b1	100	89.112	Dipodomys_ordii
ENSVPAG00000005798	SF3B1	89	88.217	FBgn0031266	Sf3b1	88	88.217	Drosophila_melanogaster
ENSVPAG00000005798	SF3B1	83	89.518	ENSETEG00000009188	SF3B1	100	89.518	Echinops_telfairi
ENSVPAG00000005798	SF3B1	95	89.961	ENSEBUG00000004325	sf3b1	98	89.961	Eptatretus_burgeri
ENSVPAG00000005798	SF3B1	100	91.794	ENSEASG00005020159	SF3B1	98	91.794	Equus_asinus_asinus
ENSVPAG00000005798	SF3B1	100	91.794	ENSECAG00000021657	SF3B1	98	91.794	Equus_caballus
ENSVPAG00000005798	SF3B1	81	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSVPAG00000005798	SF3B1	96	93.268	ENSELUG00000005977	sf3b1	93	93.268	Esox_lucius
ENSVPAG00000005798	SF3B1	100	91.871	ENSFCAG00000005038	SF3B1	100	91.871	Felis_catus
ENSVPAG00000005798	SF3B1	95	97.183	ENSFALG00000004281	SF3B1	95	97.183	Ficedula_albicollis
ENSVPAG00000005798	SF3B1	100	91.871	ENSFDAG00000017510	SF3B1	100	91.871	Fukomys_damarensis
ENSVPAG00000005798	SF3B1	96	93.366	ENSFHEG00000014333	sf3b1	95	93.366	Fundulus_heteroclitus
ENSVPAG00000005798	SF3B1	96	93.366	ENSGMOG00000006773	sf3b1	95	93.366	Gadus_morhua
ENSVPAG00000005798	SF3B1	96	97.297	ENSGALG00000008038	SF3B1	96	97.297	Gallus_gallus
ENSVPAG00000005798	SF3B1	94	93.171	ENSGAFG00000000704	sf3b1	95	93.171	Gambusia_affinis
ENSVPAG00000005798	SF3B1	100	86.509	ENSGACG00000008839	sf3b1	100	86.509	Gasterosteus_aculeatus
ENSVPAG00000005798	SF3B1	95	96.244	ENSGAGG00000017478	SF3B1	100	90.015	Gopherus_agassizii
ENSVPAG00000005798	SF3B1	90	100.000	ENSGGOG00000009264	SF3B1	93	100.000	Gorilla_gorilla
ENSVPAG00000005798	SF3B1	95	92.766	ENSHBUG00000007705	sf3b1	95	92.766	Haplochromis_burtoni
ENSVPAG00000005798	SF3B1	99	91.815	ENSHGLG00000008285	-	99	91.815	Heterocephalus_glaber_female
ENSVPAG00000005798	SF3B1	99	89.807	ENSHGLG00100005535	-	99	89.807	Heterocephalus_glaber_male
ENSVPAG00000005798	SF3B1	96	93.561	ENSHCOG00000016775	sf3b1	95	93.561	Hippocampus_comes
ENSVPAG00000005798	SF3B1	96	93.561	ENSIPUG00000013171	sf3b1	97	93.561	Ictalurus_punctatus
ENSVPAG00000005798	SF3B1	100	91.871	ENSSTOG00000011034	SF3B1	100	91.871	Ictidomys_tridecemlineatus
ENSVPAG00000005798	SF3B1	99	91.705	ENSJJAG00000010903	Sf3b1	99	91.705	Jaculus_jaculus
ENSVPAG00000005798	SF3B1	96	93.268	ENSKMAG00000004009	sf3b1	95	93.268	Kryptolebias_marmoratus
ENSVPAG00000005798	SF3B1	95	93.268	ENSLBEG00000022208	sf3b1	95	93.268	Labrus_bergylta
ENSVPAG00000005798	SF3B1	99	84.816	ENSLACG00000014832	SF3B1	99	84.969	Latimeria_chalumnae
ENSVPAG00000005798	SF3B1	100	87.557	ENSLOCG00000003899	sf3b1	100	87.405	Lepisosteus_oculatus
ENSVPAG00000005798	SF3B1	100	91.871	ENSLAFG00000001956	SF3B1	100	91.871	Loxodonta_africana
ENSVPAG00000005798	SF3B1	99	91.815	ENSMMUG00000022430	SF3B1	99	91.815	Macaca_mulatta
ENSVPAG00000005798	SF3B1	100	91.871	ENSMNEG00000042333	SF3B1	100	91.871	Macaca_nemestrina
ENSVPAG00000005798	SF3B1	85	100.000	ENSMLEG00000026141	SF3B1	92	100.000	Mandrillus_leucophaeus
ENSVPAG00000005798	SF3B1	96	93.268	ENSMAMG00000010241	sf3b1	95	93.268	Mastacembelus_armatus
ENSVPAG00000005798	SF3B1	96	92.683	ENSMZEG00005021254	sf3b1	95	92.683	Maylandia_zebra
ENSVPAG00000005798	SF3B1	95	95.122	ENSMGAG00000007017	SF3B1	95	95.122	Meleagris_gallopavo
ENSVPAG00000005798	SF3B1	99	87.568	ENSMAUG00000009071	Sf3b1	99	87.568	Mesocricetus_auratus
ENSVPAG00000005798	SF3B1	100	91.794	ENSMICG00000013879	SF3B1	100	91.794	Microcebus_murinus
ENSVPAG00000005798	SF3B1	99	87.346	ENSMOCG00000000455	Sf3b1	99	87.346	Microtus_ochrogaster
ENSVPAG00000005798	SF3B1	79	92.593	ENSMMOG00000000475	sf3b1	94	92.593	Mola_mola
ENSVPAG00000005798	SF3B1	100	91.181	ENSMODG00000012275	SF3B1	100	91.181	Monodelphis_domestica
ENSVPAG00000005798	SF3B1	96	93.268	ENSMALG00000017211	sf3b1	95	93.268	Monopterus_albus
ENSVPAG00000005798	SF3B1	100	91.871	MGP_CAROLIEiJ_G0014141	Sf3b1	100	91.871	Mus_caroli
ENSVPAG00000005798	SF3B1	100	91.871	ENSMUSG00000025982	Sf3b1	100	91.871	Mus_musculus
ENSVPAG00000005798	SF3B1	100	91.871	MGP_SPRETEiJ_G0014947	Sf3b1	100	91.871	Mus_spretus
ENSVPAG00000005798	SF3B1	100	91.871	ENSMPUG00000007799	SF3B1	100	91.871	Mustela_putorius_furo
ENSVPAG00000005798	SF3B1	100	90.644	ENSMLUG00000000840	SF3B1	100	90.644	Myotis_lucifugus
ENSVPAG00000005798	SF3B1	99	91.538	ENSNGAG00000021884	-	100	91.538	Nannospalax_galili
ENSVPAG00000005798	SF3B1	96	92.683	ENSNBRG00000015816	sf3b1	95	92.683	Neolamprologus_brichardi
ENSVPAG00000005798	SF3B1	100	91.871	ENSNLEG00000006861	SF3B1	100	91.871	Nomascus_leucogenys
ENSVPAG00000005798	SF3B1	64	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSVPAG00000005798	SF3B1	90	92.992	ENSOPRG00000008596	SF3B1	90	92.992	Ochotona_princeps
ENSVPAG00000005798	SF3B1	100	91.871	ENSODEG00000011153	-	100	91.871	Octodon_degus
ENSVPAG00000005798	SF3B1	96	92.683	ENSONIG00000013758	sf3b1	95	92.683	Oreochromis_niloticus
ENSVPAG00000005798	SF3B1	79	94.341	ENSOCUG00000012722	-	91	94.341	Oryctolagus_cuniculus
ENSVPAG00000005798	SF3B1	96	93.268	ENSORLG00000020219	sf3b1	95	93.268	Oryzias_latipes
ENSVPAG00000005798	SF3B1	96	93.268	ENSORLG00020001746	sf3b1	95	93.268	Oryzias_latipes_hni
ENSVPAG00000005798	SF3B1	59	88.809	ENSORLG00015001759	sf3b1	91	88.809	Oryzias_latipes_hsok
ENSVPAG00000005798	SF3B1	96	93.268	ENSOMEG00000019231	sf3b1	95	93.268	Oryzias_melastigma
ENSVPAG00000005798	SF3B1	100	91.794	ENSOARG00000015374	SF3B1	100	91.794	Ovis_aries
ENSVPAG00000005798	SF3B1	100	91.871	ENSPPAG00000035007	SF3B1	100	91.871	Pan_paniscus
ENSVPAG00000005798	SF3B1	100	91.871	ENSPPRG00000009090	SF3B1	100	91.871	Panthera_pardus
ENSVPAG00000005798	SF3B1	100	91.871	ENSPTIG00000021557	SF3B1	100	91.871	Panthera_tigris_altaica
ENSVPAG00000005798	SF3B1	89	100.000	ENSPTRG00000012771	SF3B1	91	100.000	Pan_troglodytes
ENSVPAG00000005798	SF3B1	100	91.871	ENSPANG00000013417	SF3B1	100	91.871	Papio_anubis
ENSVPAG00000005798	SF3B1	96	93.184	ENSPKIG00000000784	sf3b1	96	93.184	Paramormyrops_kingsleyae
ENSVPAG00000005798	SF3B1	95	95.122	ENSPSIG00000017222	SF3B1	95	95.122	Pelodiscus_sinensis
ENSVPAG00000005798	SF3B1	86	93.230	ENSPMGG00000004330	sf3b1	94	93.230	Periophthalmus_magnuspinnatus
ENSVPAG00000005798	SF3B1	99	91.815	ENSPEMG00000010699	Sf3b1	100	91.815	Peromyscus_maniculatus_bairdii
ENSVPAG00000005798	SF3B1	100	83.055	ENSPMAG00000001311	sf3b1	100	83.207	Petromyzon_marinus
ENSVPAG00000005798	SF3B1	100	91.104	ENSPCIG00000010642	SF3B1	100	91.104	Phascolarctos_cinereus
ENSVPAG00000005798	SF3B1	96	93.171	ENSPFOG00000000073	sf3b1	95	93.171	Poecilia_formosa
ENSVPAG00000005798	SF3B1	96	93.171	ENSPLAG00000002293	sf3b1	95	93.171	Poecilia_latipinna
ENSVPAG00000005798	SF3B1	96	93.171	ENSPMEG00000000446	sf3b1	93	93.171	Poecilia_mexicana
ENSVPAG00000005798	SF3B1	96	93.268	ENSPREG00000019652	sf3b1	95	93.268	Poecilia_reticulata
ENSVPAG00000005798	SF3B1	95	95.220	ENSPPYG00000013044	SF3B1	100	95.220	Pongo_abelii
ENSVPAG00000005798	SF3B1	100	91.718	ENSPCAG00000009292	SF3B1	100	91.718	Procavia_capensis
ENSVPAG00000005798	SF3B1	100	91.794	ENSPCOG00000024074	SF3B1	100	91.794	Propithecus_coquereli
ENSVPAG00000005798	SF3B1	100	91.871	ENSPVAG00000008302	SF3B1	100	91.871	Pteropus_vampyrus
ENSVPAG00000005798	SF3B1	96	92.683	ENSPNYG00000014939	sf3b1	95	92.683	Pundamilia_nyererei
ENSVPAG00000005798	SF3B1	96	93.659	ENSPNAG00000008288	sf3b1	95	93.659	Pygocentrus_nattereri
ENSVPAG00000005798	SF3B1	100	91.871	ENSRNOG00000013516	Sf3b1	100	91.871	Rattus_norvegicus
ENSVPAG00000005798	SF3B1	99	88.095	ENSRBIG00000026096	SF3B1	100	88.095	Rhinopithecus_bieti
ENSVPAG00000005798	SF3B1	100	91.871	ENSRROG00000031308	SF3B1	100	91.871	Rhinopithecus_roxellana
ENSVPAG00000005798	SF3B1	100	91.871	ENSSBOG00000020080	SF3B1	100	91.871	Saimiri_boliviensis_boliviensis
ENSVPAG00000005798	SF3B1	100	91.181	ENSSHAG00000017564	SF3B1	100	91.181	Sarcophilus_harrisii
ENSVPAG00000005798	SF3B1	96	93.951	ENSSFOG00015021535	sf3b1	95	93.951	Scleropages_formosus
ENSVPAG00000005798	SF3B1	95	93.444	ENSSMAG00000013977	sf3b1	94	93.444	Scophthalmus_maximus
ENSVPAG00000005798	SF3B1	96	93.366	ENSSDUG00000017422	sf3b1	95	93.366	Seriola_dumerili
ENSVPAG00000005798	SF3B1	96	93.366	ENSSLDG00000019495	sf3b1	95	93.366	Seriola_lalandi_dorsalis
ENSVPAG00000005798	SF3B1	73	100.000	ENSSARG00000007016	SF3B1	72	100.000	Sorex_araneus
ENSVPAG00000005798	SF3B1	96	96.847	ENSSPUG00000000410	SF3B1	96	96.847	Sphenodon_punctatus
ENSVPAG00000005798	SF3B1	96	93.561	ENSSPAG00000010451	sf3b1	94	93.561	Stegastes_partitus
ENSVPAG00000005798	SF3B1	91	90.664	ENSSSCG00000016075	SF3B1	100	90.846	Sus_scrofa
ENSVPAG00000005798	SF3B1	96	96.847	ENSTGUG00000010553	SF3B1	96	96.847	Taeniopygia_guttata
ENSVPAG00000005798	SF3B1	96	93.366	ENSTRUG00000015534	sf3b1	95	93.366	Takifugu_rubripes
ENSVPAG00000005798	SF3B1	80	100.000	ENSTBEG00000008714	SF3B1	88	100.000	Tupaia_belangeri
ENSVPAG00000005798	SF3B1	92	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSVPAG00000005798	SF3B1	84	99.190	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSVPAG00000005798	SF3B1	100	91.871	ENSUMAG00000020945	SF3B1	100	91.871	Ursus_maritimus
ENSVPAG00000005798	SF3B1	100	91.871	ENSVVUG00000025948	SF3B1	95	91.871	Vulpes_vulpes
ENSVPAG00000005798	SF3B1	100	88.659	ENSXETG00000013339	sf3b1	100	88.659	Xenopus_tropicalis
ENSVPAG00000005798	SF3B1	96	91.122	ENSXCOG00000018086	sf3b1	98	91.122	Xiphophorus_couchianus
ENSVPAG00000005798	SF3B1	96	93.268	ENSXMAG00000007369	sf3b1	95	93.651	Xiphophorus_maculatus