EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000009446 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 19758 bases
Position: chrGeneScaffold_2270:119064-138821
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000008790	EST1	PF10374.9	8.8e-16	1	1
ENSVPAP00000008790	EST1_DNA_bind	PF10373.9	6.8e-41	1	2
ENSVPAP00000008790	EST1_DNA_bind	PF10373.9	6.8e-41	2	2
ENSVPAP00000008790	PIN_4	PF13638.6	8.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000009450	SMG5-201	2976	-	ENSVPAP00000008790	992 (aa)	-	UPI00018BD54B

Gene Model

Click here to download ENSVPAG00000009446's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000009446's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000009446	SMG5	99	86.983	ENSG00000198952	SMG5	98	86.983	Homo_sapiens
ENSVPAG00000009446	SMG5	99	59.619	ENSAPOG00000019690	smg5	92	72.277	Acanthochromis_polyacanthus
ENSVPAG00000009446	SMG5	99	84.274	ENSAMEG00000014458	SMG5	99	84.274	Ailuropoda_melanoleuca
ENSVPAG00000009446	SMG5	99	57.185	ENSACIG00000001353	smg5	91	71.287	Amphilophus_citrinellus
ENSVPAG00000009446	SMG5	99	56.903	ENSAOCG00000019483	smg5	87	74.713	Amphiprion_ocellaris
ENSVPAG00000009446	SMG5	99	58.234	ENSAPEG00000022949	smg5	91	72.277	Amphiprion_percula
ENSVPAG00000009446	SMG5	99	58.169	ENSATEG00000005348	smg5	92	71.287	Anabas_testudineus
ENSVPAG00000009446	SMG5	99	69.922	ENSAPLG00000010263	SMG5	99	69.727	Anas_platyrhynchos
ENSVPAG00000009446	SMG5	99	86.579	ENSANAG00000032899	SMG5	99	86.579	Aotus_nancymaae
ENSVPAG00000009446	SMG5	99	57.002	ENSACLG00000009311	smg5	88	78.882	Astatotilapia_calliptera
ENSVPAG00000009446	SMG5	92	68.329	ENSAMXG00000024616	smg5	92	71.287	Astyanax_mexicanus
ENSVPAG00000009446	SMG5	84	44.479	ENSBTAG00000021747	-	82	43.779	Bos_taurus
ENSVPAG00000009446	SMG5	93	95.628	ENSBTAG00000009435	SMG5	90	95.628	Bos_taurus
ENSVPAG00000009446	SMG5	99	86.781	ENSCJAG00000005684	SMG5	98	86.781	Callithrix_jacchus
ENSVPAG00000009446	SMG5	99	85.267	ENSCAFG00000016839	SMG5	98	85.267	Canis_familiaris
ENSVPAG00000009446	SMG5	99	85.267	ENSCAFG00020006061	SMG5	98	85.267	Canis_lupus_dingo
ENSVPAG00000009446	SMG5	99	86.579	ENSCHIG00000007709	SMG5	98	86.579	Capra_hircus
ENSVPAG00000009446	SMG5	94	44.724	ENSCHIG00000006323	-	92	44.724	Capra_hircus
ENSVPAG00000009446	SMG5	99	86.391	ENSTSYG00000004099	SMG5	98	86.089	Carlito_syrichta
ENSVPAG00000009446	SMG5	81	74.473	ENSCAPG00000003631	SMG5	87	73.951	Cavia_aperea
ENSVPAG00000009446	SMG5	99	84.391	ENSCPOG00000015696	SMG5	98	84.794	Cavia_porcellus
ENSVPAG00000009446	SMG5	99	86.680	ENSCCAG00000027409	SMG5	99	86.680	Cebus_capucinus
ENSVPAG00000009446	SMG5	99	86.983	ENSCATG00000030539	SMG5	98	86.983	Cercocebus_atys
ENSVPAG00000009446	SMG5	99	84.995	ENSCLAG00000003983	SMG5	98	85.398	Chinchilla_lanigera
ENSVPAG00000009446	SMG5	99	86.882	ENSCSAG00000002120	SMG5	98	86.882	Chlorocebus_sabaeus
ENSVPAG00000009446	SMG5	55	74.725	ENSCHOG00000008741	-	57	74.453	Choloepus_hoffmanni
ENSVPAG00000009446	SMG5	92	71.668	ENSCPBG00000025848	SMG5	97	72.193	Chrysemys_picta_bellii
ENSVPAG00000009446	SMG5	88	52.667	ENSCING00000008706	-	85	52.667	Ciona_intestinalis
ENSVPAG00000009446	SMG5	95	95.545	ENSCANG00000029208	SMG5	94	95.545	Colobus_angolensis_palliatus
ENSVPAG00000009446	SMG5	99	82.075	ENSCGRG00001006336	Smg5	98	82.075	Cricetulus_griseus_chok1gshd
ENSVPAG00000009446	SMG5	99	82.075	ENSCGRG00000005111	Smg5	100	82.075	Cricetulus_griseus_crigri
ENSVPAG00000009446	SMG5	99	57.086	ENSCSEG00000014220	smg5	92	68.317	Cynoglossus_semilaevis
ENSVPAG00000009446	SMG5	99	52.390	ENSCVAG00000000529	smg5	91	70.792	Cyprinodon_variegatus
ENSVPAG00000009446	SMG5	93	69.327	ENSDARG00000041481	smg5	54	70.792	Danio_rerio
ENSVPAG00000009446	SMG5	79	40.000	ENSDNOG00000039862	-	84	40.000	Dasypus_novemcinctus
ENSVPAG00000009446	SMG5	99	82.038	ENSDNOG00000000051	SMG5	98	82.038	Dasypus_novemcinctus
ENSVPAG00000009446	SMG5	99	83.787	ENSDORG00000010382	Smg5	98	84.189	Dipodomys_ordii
ENSVPAG00000009446	SMG5	82	93.204	ENSETEG00000010336	SMG5	87	93.204	Echinops_telfairi
ENSVPAG00000009446	SMG5	87	69.767	ENSEBUG00000003739	smg5	90	69.767	Eptatretus_burgeri
ENSVPAG00000009446	SMG5	99	87.185	ENSEASG00005019122	SMG5	98	87.185	Equus_asinus_asinus
ENSVPAG00000009446	SMG5	99	87.185	ENSECAG00000001389	SMG5	98	87.185	Equus_caballus
ENSVPAG00000009446	SMG5	75	86.744	ENSEEUG00000012690	SMG5	75	86.744	Erinaceus_europaeus
ENSVPAG00000009446	SMG5	99	57.325	ENSELUG00000012585	smg5	93	70.443	Esox_lucius
ENSVPAG00000009446	SMG5	99	85.469	ENSFCAG00000011783	SMG5	98	85.484	Felis_catus
ENSVPAG00000009446	SMG5	60	75.084	ENSFALG00000001166	-	99	75.084	Ficedula_albicollis
ENSVPAG00000009446	SMG5	99	83.585	ENSFDAG00000017388	SMG5	100	83.384	Fukomys_damarensis
ENSVPAG00000009446	SMG5	92	56.928	ENSFHEG00000013939	smg5	85	70.792	Fundulus_heteroclitus
ENSVPAG00000009446	SMG5	99	53.986	ENSGMOG00000007310	smg5	85	71.782	Gadus_morhua
ENSVPAG00000009446	SMG5	99	68.580	ENSGALG00000029918	-	98	68.093	Gallus_gallus
ENSVPAG00000009446	SMG5	86	66.190	ENSGAFG00000021691	smg5	84	70.297	Gambusia_affinis
ENSVPAG00000009446	SMG5	92	67.237	ENSGACG00000013142	smg5	55	71.287	Gasterosteus_aculeatus
ENSVPAG00000009446	SMG5	99	70.691	ENSGAGG00000016131	SMG5	98	70.497	Gopherus_agassizii
ENSVPAG00000009446	SMG5	99	86.882	ENSGGOG00000010932	SMG5	98	86.882	Gorilla_gorilla
ENSVPAG00000009446	SMG5	99	56.539	ENSHBUG00000008654	smg5	92	71.782	Haplochromis_burtoni
ENSVPAG00000009446	SMG5	99	83.182	ENSHGLG00000019152	SMG5	98	83.384	Heterocephalus_glaber_female
ENSVPAG00000009446	SMG5	90	82.215	ENSHGLG00100015948	SMG5	97	82.438	Heterocephalus_glaber_male
ENSVPAG00000009446	SMG5	87	64.394	ENSHCOG00000010229	smg5	84	64.141	Hippocampus_comes
ENSVPAG00000009446	SMG5	99	54.336	ENSIPUG00000006624	Smg5	92	71.287	Ictalurus_punctatus
ENSVPAG00000009446	SMG5	99	86.075	ENSSTOG00000001780	SMG5	98	86.075	Ictidomys_tridecemlineatus
ENSVPAG00000009446	SMG5	99	82.294	ENSJJAG00000022763	Smg5	98	82.696	Jaculus_jaculus
ENSVPAG00000009446	SMG5	93	66.029	ENSKMAG00000014586	smg5	92	70.792	Kryptolebias_marmoratus
ENSVPAG00000009446	SMG5	99	57.890	ENSLBEG00000002145	smg5	91	68.571	Labrus_bergylta
ENSVPAG00000009446	SMG5	92	60.568	ENSLACG00000010521	SMG5	91	60.590	Latimeria_chalumnae
ENSVPAG00000009446	SMG5	58	69.327	ENSLOCG00000008380	smg5	53	69.270	Lepisosteus_oculatus
ENSVPAG00000009446	SMG5	99	86.176	ENSLAFG00000006241	SMG5	98	86.176	Loxodonta_africana
ENSVPAG00000009446	SMG5	99	86.882	ENSMFAG00000045357	SMG5	98	86.882	Macaca_fascicularis
ENSVPAG00000009446	SMG5	99	86.781	ENSMMUG00000000090	SMG5	98	86.781	Macaca_mulatta
ENSVPAG00000009446	SMG5	99	86.781	ENSMNEG00000044425	SMG5	98	86.781	Macaca_nemestrina
ENSVPAG00000009446	SMG5	99	84.438	ENSMLEG00000041192	SMG5	97	84.438	Mandrillus_leucophaeus
ENSVPAG00000009446	SMG5	99	53.594	ENSMAMG00000010683	smg5	50	77.676	Mastacembelus_armatus
ENSVPAG00000009446	SMG5	64	53.030	ENSMZEG00005016543	smg5	90	71.782	Maylandia_zebra
ENSVPAG00000009446	SMG5	99	56.176	ENSMZEG00005015815	smg5	91	63.861	Maylandia_zebra
ENSVPAG00000009446	SMG5	99	81.168	ENSMAUG00000010381	Smg5	98	81.168	Mesocricetus_auratus
ENSVPAG00000009446	SMG5	99	86.882	ENSMICG00000002257	SMG5	98	86.882	Microcebus_murinus
ENSVPAG00000009446	SMG5	99	82.010	ENSMOCG00000016590	Smg5	98	81.407	Microtus_ochrogaster
ENSVPAG00000009446	SMG5	99	51.005	ENSMMOG00000017199	smg5	92	68.812	Mola_mola
ENSVPAG00000009446	SMG5	75	41.294	ENSMODG00000010675	-	80	41.294	Monodelphis_domestica
ENSVPAG00000009446	SMG5	93	41.500	ENSMODG00000004511	-	95	41.500	Monodelphis_domestica
ENSVPAG00000009446	SMG5	87	79.490	ENSMODG00000016901	SMG5	95	79.954	Monodelphis_domestica
ENSVPAG00000009446	SMG5	85	44.809	ENSMODG00000004532	-	82	42.500	Monodelphis_domestica
ENSVPAG00000009446	SMG5	86	44.538	ENSMODG00000004735	-	81	45.133	Monodelphis_domestica
ENSVPAG00000009446	SMG5	99	53.769	ENSMALG00000010375	smg5	54	70.297	Monopterus_albus
ENSVPAG00000009446	SMG5	99	82.175	MGP_CAROLIEiJ_G0025163	Smg5	98	81.974	Mus_caroli
ENSVPAG00000009446	SMG5	99	82.477	ENSMUSG00000001415	Smg5	98	82.276	Mus_musculus
ENSVPAG00000009446	SMG5	99	82.193	MGP_PahariEiJ_G0026606	Smg5	98	82.696	Mus_pahari
ENSVPAG00000009446	SMG5	99	82.175	MGP_SPRETEiJ_G0026104	Smg5	98	81.974	Mus_spretus
ENSVPAG00000009446	SMG5	92	87.677	ENSMPUG00000004546	SMG5	97	87.677	Mustela_putorius_furo
ENSVPAG00000009446	SMG5	99	85.356	ENSMLUG00000008518	SMG5	98	84.353	Myotis_lucifugus
ENSVPAG00000009446	SMG5	99	83.266	ENSNGAG00000020706	Smg5	98	83.669	Nannospalax_galili
ENSVPAG00000009446	SMG5	92	46.429	ENSNGAG00000012101	-	91	46.429	Nannospalax_galili
ENSVPAG00000009446	SMG5	86	75.439	ENSNBRG00000004332	smg5	87	75.439	Neolamprologus_brichardi
ENSVPAG00000009446	SMG5	99	86.680	ENSNLEG00000012439	SMG5	98	86.680	Nomascus_leucogenys
ENSVPAG00000009446	SMG5	99	78.730	ENSMEUG00000012834	SMG5	98	79.133	Notamacropus_eugenii
ENSVPAG00000009446	SMG5	99	84.662	ENSOPRG00000009152	SMG5	98	84.662	Ochotona_princeps
ENSVPAG00000009446	SMG5	99	85.267	ENSODEG00000012237	SMG5	98	85.267	Octodon_degus
ENSVPAG00000009446	SMG5	99	52.846	ENSONIG00000008632	smg5	92	71.287	Oreochromis_niloticus
ENSVPAG00000009446	SMG5	99	86.176	ENSOCUG00000012886	SMG5	99	86.176	Oryctolagus_cuniculus
ENSVPAG00000009446	SMG5	76	47.059	ENSOCUG00000023338	-	80	47.059	Oryctolagus_cuniculus
ENSVPAG00000009446	SMG5	91	67.085	ENSORLG00000016239	smg5	92	71.782	Oryzias_latipes
ENSVPAG00000009446	SMG5	99	56.318	ENSORLG00020013127	smg5	92	71.287	Oryzias_latipes_hni
ENSVPAG00000009446	SMG5	99	56.548	ENSORLG00015019014	smg5	92	71.782	Oryzias_latipes_hsok
ENSVPAG00000009446	SMG5	99	85.267	ENSOGAG00000004966	SMG5	98	85.267	Otolemur_garnettii
ENSVPAG00000009446	SMG5	99	86.680	ENSOARG00000005778	SMG5	98	86.680	Ovis_aries
ENSVPAG00000009446	SMG5	94	44.724	ENSOARG00000011963	-	92	44.724	Ovis_aries
ENSVPAG00000009446	SMG5	99	86.882	ENSPPAG00000011996	SMG5	98	86.882	Pan_paniscus
ENSVPAG00000009446	SMG5	99	85.368	ENSPPRG00000011901	SMG5	99	85.368	Panthera_pardus
ENSVPAG00000009446	SMG5	99	78.695	ENSPTIG00000007892	SMG5	96	79.543	Panthera_tigris_altaica
ENSVPAG00000009446	SMG5	99	86.983	ENSPTRG00000049282	-	98	86.983	Pan_troglodytes
ENSVPAG00000009446	SMG5	99	86.983	ENSPTRG00000023925	SMG5	98	86.983	Pan_troglodytes
ENSVPAG00000009446	SMG5	99	86.983	ENSPANG00000011201	SMG5	98	86.983	Papio_anubis
ENSVPAG00000009446	SMG5	99	56.522	ENSPKIG00000009402	smg5	92	67.822	Paramormyrops_kingsleyae
ENSVPAG00000009446	SMG5	99	71.230	ENSPSIG00000015198	SMG5	99	71.329	Pelodiscus_sinensis
ENSVPAG00000009446	SMG5	99	53.471	ENSPMGG00000010465	smg5	92	71.782	Periophthalmus_magnuspinnatus
ENSVPAG00000009446	SMG5	99	82.075	ENSPEMG00000001819	Smg5	98	82.075	Peromyscus_maniculatus_bairdii
ENSVPAG00000009446	SMG5	93	57.426	ENSPMAG00000000410	smg5	90	57.426	Petromyzon_marinus
ENSVPAG00000009446	SMG5	99	80.262	ENSPCIG00000018938	SMG5	98	80.665	Phascolarctos_cinereus
ENSVPAG00000009446	SMG5	93	66.429	ENSPFOG00000010191	smg5	92	70.792	Poecilia_formosa
ENSVPAG00000009446	SMG5	93	66.429	ENSPLAG00000009332	smg5	92	70.792	Poecilia_latipinna
ENSVPAG00000009446	SMG5	93	66.429	ENSPMEG00000014105	smg5	92	70.792	Poecilia_mexicana
ENSVPAG00000009446	SMG5	93	66.429	ENSPREG00000017713	smg5	92	70.792	Poecilia_reticulata
ENSVPAG00000009446	SMG5	99	87.185	ENSPPYG00000000723	SMG5	98	87.185	Pongo_abelii
ENSVPAG00000009446	SMG5	62	98.551	ENSPCAG00000008412	SMG5	65	98.551	Procavia_capensis
ENSVPAG00000009446	SMG5	99	86.680	ENSPCOG00000004741	SMG5	98	86.680	Propithecus_coquereli
ENSVPAG00000009446	SMG5	90	93.750	ENSPVAG00000016748	SMG5	88	93.750	Pteropus_vampyrus
ENSVPAG00000009446	SMG5	99	52.551	ENSPNYG00000013397	smg5	92	71.782	Pundamilia_nyererei
ENSVPAG00000009446	SMG5	99	54.680	ENSPNAG00000028363	smg5	55	71.287	Pygocentrus_nattereri
ENSVPAG00000009446	SMG5	99	82.175	ENSRNOG00000019590	Smg5	98	81.974	Rattus_norvegicus
ENSVPAG00000009446	SMG5	99	86.680	ENSRBIG00000027428	SMG5	98	86.680	Rhinopithecus_bieti
ENSVPAG00000009446	SMG5	99	86.579	ENSRROG00000030035	SMG5	98	86.579	Rhinopithecus_roxellana
ENSVPAG00000009446	SMG5	99	86.882	ENSSBOG00000033339	SMG5	98	86.882	Saimiri_boliviensis_boliviensis
ENSVPAG00000009446	SMG5	78	45.161	ENSSHAG00000000561	-	77	45.161	Sarcophilus_harrisii
ENSVPAG00000009446	SMG5	80	36.136	ENSSHAG00000009572	-	58	46.847	Sarcophilus_harrisii
ENSVPAG00000009446	SMG5	99	79.860	ENSSHAG00000014163	SMG5	94	87.864	Sarcophilus_harrisii
ENSVPAG00000009446	SMG5	60	41.803	ENSSHAG00000000935	-	84	43.478	Sarcophilus_harrisii
ENSVPAG00000009446	SMG5	99	58.151	ENSSFOG00015024175	smg5	92	70.297	Scleropages_formosus
ENSVPAG00000009446	SMG5	99	53.707	ENSSMAG00000013059	smg5	92	70.792	Scophthalmus_maximus
ENSVPAG00000009446	SMG5	92	65.937	ENSSDUG00000007122	smg5	92	72.277	Seriola_dumerili
ENSVPAG00000009446	SMG5	92	66.585	ENSSLDG00000011418	smg5	92	72.772	Seriola_lalandi_dorsalis
ENSVPAG00000009446	SMG5	90	70.740	ENSSARG00000012484	SMG5	97	70.740	Sorex_araneus
ENSVPAG00000009446	SMG5	92	72.432	ENSSPUG00000002260	SMG5	97	71.803	Sphenodon_punctatus
ENSVPAG00000009446	SMG5	91	66.914	ENSSPAG00000014266	smg5	92	70.792	Stegastes_partitus
ENSVPAG00000009446	SMG5	92	70.338	ENSSSCG00000039308	-	90	70.556	Sus_scrofa
ENSVPAG00000009446	SMG5	53	31.365	ENSSSCG00000037182	-	82	32.422	Sus_scrofa
ENSVPAG00000009446	SMG5	99	88.295	ENSSSCG00000006490	-	97	91.930	Sus_scrofa
ENSVPAG00000009446	SMG5	99	71.242	ENSTGUG00000003748	-	97	71.242	Taeniopygia_guttata
ENSVPAG00000009446	SMG5	93	65.777	ENSTRUG00000012580	smg5	91	68.116	Takifugu_rubripes
ENSVPAG00000009446	SMG5	99	57.284	ENSTNIG00000010303	smg5	91	69.458	Tetraodon_nigroviridis
ENSVPAG00000009446	SMG5	60	99.507	ENSTBEG00000002777	SMG5	59	99.507	Tupaia_belangeri
ENSVPAG00000009446	SMG5	92	89.531	ENSTTRG00000001401	SMG5	90	89.531	Tursiops_truncatus
ENSVPAG00000009446	SMG5	99	84.662	ENSUAMG00000013721	SMG5	98	84.662	Ursus_americanus
ENSVPAG00000009446	SMG5	95	95.050	ENSUMAG00000018041	SMG5	95	95.050	Ursus_maritimus
ENSVPAG00000009446	SMG5	99	85.166	ENSVVUG00000005887	SMG5	98	85.166	Vulpes_vulpes
ENSVPAG00000009446	SMG5	78	60.908	ENSXETG00000033791	SMG5	92	65.517	Xenopus_tropicalis
ENSVPAG00000009446	SMG5	75	69.231	ENSXCOG00000004379	smg5	94	69.231	Xiphophorus_couchianus
ENSVPAG00000009446	SMG5	93	65.714	ENSXMAG00000013499	smg5	92	70.297	Xiphophorus_maculatus