EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVPAG00000009971 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 12790 bases
Position: chrscaffold_5208:40847-53636
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000009280	Smg4_UPF3	PF03467.15	3.9e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000009971	UPF3B-201	1233	-	ENSVPAP00000009280	410 (aa)	-	UPI00018BC98A

Gene Model

Click here to download ENSVPAG00000009971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000009971's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000009971	UPF3B	100	95.610	ENSG00000125351	UPF3B	85	95.610	Homo_sapiens
ENSVPAG00000009971	UPF3B	98	45.542	ENSG00000169062	UPF3A	79	45.542	Homo_sapiens
ENSVPAG00000009971	UPF3B	95	57.286	ENSAPOG00000012775	upf3b	84	57.357	Acanthochromis_polyacanthus
ENSVPAG00000009971	UPF3B	92	43.152	ENSAMEG00000004259	UPF3A	80	42.708	Ailuropoda_melanoleuca
ENSVPAG00000009971	UPF3B	100	98.049	ENSAMEG00000000163	UPF3B	85	98.049	Ailuropoda_melanoleuca
ENSVPAG00000009971	UPF3B	93	53.571	ENSACIG00000013582	upf3b	81	51.145	Amphilophus_citrinellus
ENSVPAG00000009971	UPF3B	95	55.611	ENSAOCG00000000706	upf3b	84	56.533	Amphiprion_ocellaris
ENSVPAG00000009971	UPF3B	95	57.107	ENSAPEG00000005545	upf3b	84	57.538	Amphiprion_percula
ENSVPAG00000009971	UPF3B	93	58.205	ENSATEG00000018742	upf3b	81	59.335	Anabas_testudineus
ENSVPAG00000009971	UPF3B	99	66.747	ENSACAG00000003625	UPF3B	86	66.747	Anolis_carolinensis
ENSVPAG00000009971	UPF3B	100	86.829	ENSANAG00000025598	-	84	85.610	Aotus_nancymaae
ENSVPAG00000009971	UPF3B	100	96.585	ENSANAG00000021894	-	85	96.585	Aotus_nancymaae
ENSVPAG00000009971	UPF3B	95	56.391	ENSACLG00000001649	upf3b	84	57.750	Astatotilapia_calliptera
ENSVPAG00000009971	UPF3B	61	100.000	ENSBTAG00000035615	UPF3B	76	100.000	Bos_taurus
ENSVPAG00000009971	UPF3B	93	46.173	ENSCJAG00000019102	UPF3A	76	40.415	Callithrix_jacchus
ENSVPAG00000009971	UPF3B	100	95.854	ENSCJAG00000004975	UPF3B	85	95.854	Callithrix_jacchus
ENSVPAG00000009971	UPF3B	100	97.073	ENSCAFG00000018426	UPF3B	85	97.073	Canis_familiaris
ENSVPAG00000009971	UPF3B	100	91.220	ENSCAFG00020004074	UPF3B	84	91.220	Canis_lupus_dingo
ENSVPAG00000009971	UPF3B	99	62.836	ENSCHIG00000011454	-	85	61.369	Capra_hircus
ENSVPAG00000009971	UPF3B	97	97.243	ENSCHIG00000018011	-	85	97.243	Capra_hircus
ENSVPAG00000009971	UPF3B	100	97.073	ENSCHIG00000000247	-	85	97.073	Capra_hircus
ENSVPAG00000009971	UPF3B	100	92.927	ENSTSYG00000014690	UPF3B	83	96.399	Carlito_syrichta
ENSVPAG00000009971	UPF3B	54	94.771	ENSCCAG00000021964	-	73	94.771	Cebus_capucinus
ENSVPAG00000009971	UPF3B	95	54.707	ENSCCAG00000029813	-	82	53.944	Cebus_capucinus
ENSVPAG00000009971	UPF3B	93	46.684	ENSCCAG00000018406	UPF3A	76	41.495	Cebus_capucinus
ENSVPAG00000009971	UPF3B	100	95.610	ENSCATG00000017506	UPF3B	85	95.610	Cercocebus_atys
ENSVPAG00000009971	UPF3B	100	91.463	ENSCLAG00000003260	UPF3B	84	91.463	Chinchilla_lanigera
ENSVPAG00000009971	UPF3B	100	95.610	ENSCSAG00000018348	UPF3B	85	95.610	Chlorocebus_sabaeus
ENSVPAG00000009971	UPF3B	99	65.385	ENSCPBG00000020685	UPF3B	86	65.385	Chrysemys_picta_bellii
ENSVPAG00000009971	UPF3B	64	98.980	ENSCANG00000029220	UPF3B	77	98.980	Colobus_angolensis_palliatus
ENSVPAG00000009971	UPF3B	100	81.796	ENSCGRG00001006858	-	84	82.039	Cricetulus_griseus_chok1gshd
ENSVPAG00000009971	UPF3B	71	81.443	ENSCGRG00001013643	-	74	78.049	Cricetulus_griseus_chok1gshd
ENSVPAG00000009971	UPF3B	100	81.553	ENSCGRG00000007627	Upf3b	95	81.796	Cricetulus_griseus_crigri
ENSVPAG00000009971	UPF3B	92	56.136	ENSCSEG00000002046	upf3b	78	57.403	Cynoglossus_semilaevis
ENSVPAG00000009971	UPF3B	95	53.171	ENSCVAG00000005030	upf3b	86	51.422	Cyprinodon_variegatus
ENSVPAG00000009971	UPF3B	92	58.312	ENSDARG00000000489	upf3b	85	56.934	Danio_rerio
ENSVPAG00000009971	UPF3B	100	94.878	ENSDNOG00000008665	UPF3B	85	94.878	Dasypus_novemcinctus
ENSVPAG00000009971	UPF3B	100	88.049	ENSDORG00000006077	Upf3b	84	88.049	Dipodomys_ordii
ENSVPAG00000009971	UPF3B	93	49.235	ENSEASG00005021884	UPF3A	78	42.132	Equus_asinus_asinus
ENSVPAG00000009971	UPF3B	99	91.443	ENSEASG00005012919	UPF3B	84	90.465	Equus_asinus_asinus
ENSVPAG00000009971	UPF3B	93	49.490	ENSECAG00000017141	UPF3A	78	42.386	Equus_caballus
ENSVPAG00000009971	UPF3B	99	91.443	ENSECAG00000016947	UPF3B	84	90.465	Equus_caballus
ENSVPAG00000009971	UPF3B	90	52.580	ENSELUG00000020389	upf3b	88	51.025	Esox_lucius
ENSVPAG00000009971	UPF3B	98	44.836	ENSFCAG00000014602	UPF3A	81	40.876	Felis_catus
ENSVPAG00000009971	UPF3B	100	95.388	ENSFCAG00000004388	UPF3B	85	96.117	Felis_catus
ENSVPAG00000009971	UPF3B	99	68.246	ENSFALG00000001569	UPF3B	83	68.246	Ficedula_albicollis
ENSVPAG00000009971	UPF3B	100	91.463	ENSFDAG00000018869	UPF3B	84	91.463	Fukomys_damarensis
ENSVPAG00000009971	UPF3B	92	52.987	ENSFHEG00000017895	upf3b	81	53.351	Fundulus_heteroclitus
ENSVPAG00000009971	UPF3B	92	55.641	ENSGMOG00000001621	upf3b	80	56.667	Gadus_morhua
ENSVPAG00000009971	UPF3B	99	66.988	ENSGALG00000008618	UPF3B	83	69.398	Gallus_gallus
ENSVPAG00000009971	UPF3B	95	54.707	ENSGAFG00000000829	upf3b	84	55.838	Gambusia_affinis
ENSVPAG00000009971	UPF3B	90	56.545	ENSGACG00000017435	upf3b	73	74.242	Gasterosteus_aculeatus
ENSVPAG00000009971	UPF3B	99	68.029	ENSGAGG00000001219	UPF3B	86	68.029	Gopherus_agassizii
ENSVPAG00000009971	UPF3B	98	37.681	ENSGGOG00000043074	-	79	34.634	Gorilla_gorilla
ENSVPAG00000009971	UPF3B	98	37.681	ENSGGOG00000041219	-	84	34.634	Gorilla_gorilla
ENSVPAG00000009971	UPF3B	98	45.301	ENSGGOG00000015428	UPF3A	79	45.301	Gorilla_gorilla
ENSVPAG00000009971	UPF3B	100	95.610	ENSGGOG00000023995	UPF3B	85	95.610	Gorilla_gorilla
ENSVPAG00000009971	UPF3B	95	56.391	ENSHBUG00000017393	upf3b	84	57.750	Haplochromis_burtoni
ENSVPAG00000009971	UPF3B	83	83.235	ENSHGLG00000011189	-	77	83.235	Heterocephalus_glaber_female
ENSVPAG00000009971	UPF3B	100	91.951	ENSHGLG00000019582	-	84	91.951	Heterocephalus_glaber_female
ENSVPAG00000009971	UPF3B	100	88.049	ENSHGLG00100002042	-	84	88.780	Heterocephalus_glaber_male
ENSVPAG00000009971	UPF3B	83	82.941	ENSHGLG00100001889	-	77	82.353	Heterocephalus_glaber_male
ENSVPAG00000009971	UPF3B	100	54.739	ENSHCOG00000017004	upf3b	80	55.949	Hippocampus_comes
ENSVPAG00000009971	UPF3B	100	56.295	ENSIPUG00000019249	upf3b	87	57.482	Ictalurus_punctatus
ENSVPAG00000009971	UPF3B	100	91.220	ENSSTOG00000001101	UPF3B	84	91.220	Ictidomys_tridecemlineatus
ENSVPAG00000009971	UPF3B	100	85.680	ENSJJAG00000000053	Upf3b	85	85.922	Jaculus_jaculus
ENSVPAG00000009971	UPF3B	95	55.303	ENSKMAG00000020300	upf3b	84	56.030	Kryptolebias_marmoratus
ENSVPAG00000009971	UPF3B	100	58.451	ENSLACG00000008691	UPF3B	88	57.631	Latimeria_chalumnae
ENSVPAG00000009971	UPF3B	54	71.875	ENSLOCG00000015238	upf3b	86	58.065	Lepisosteus_oculatus
ENSVPAG00000009971	UPF3B	99	49.057	ENSLOCG00000002665	upf3a	84	45.000	Lepisosteus_oculatus
ENSVPAG00000009971	UPF3B	99	40.777	ENSLAFG00000023358	UPF3A	94	40.389	Loxodonta_africana
ENSVPAG00000009971	UPF3B	100	90.488	ENSLAFG00000001267	UPF3B	84	90.488	Loxodonta_africana
ENSVPAG00000009971	UPF3B	100	95.366	ENSMFAG00000045414	UPF3B	85	95.366	Macaca_fascicularis
ENSVPAG00000009971	UPF3B	100	95.366	ENSMMUG00000020222	UPF3B	85	95.366	Macaca_mulatta
ENSVPAG00000009971	UPF3B	100	95.366	ENSMNEG00000039794	UPF3B	85	95.366	Macaca_nemestrina
ENSVPAG00000009971	UPF3B	100	95.610	ENSMLEG00000010999	UPF3B	85	95.610	Mandrillus_leucophaeus
ENSVPAG00000009971	UPF3B	95	56.219	ENSMZEG00005007871	upf3b	84	57.500	Maylandia_zebra
ENSVPAG00000009971	UPF3B	100	48.598	ENSMGAG00000014837	UPF3A	97	43.192	Meleagris_gallopavo
ENSVPAG00000009971	UPF3B	96	66.833	ENSMGAG00000007728	UPF3B	99	68.080	Meleagris_gallopavo
ENSVPAG00000009971	UPF3B	100	84.223	ENSMAUG00000008705	Upf3b	85	84.466	Mesocricetus_auratus
ENSVPAG00000009971	UPF3B	64	98.477	ENSMICG00000001743	UPF3B	77	98.477	Microcebus_murinus
ENSVPAG00000009971	UPF3B	100	86.165	ENSMOCG00000017893	Upf3b	85	86.408	Microtus_ochrogaster
ENSVPAG00000009971	UPF3B	95	54.020	ENSMMOG00000004183	upf3b	81	56.701	Mola_mola
ENSVPAG00000009971	UPF3B	99	71.014	ENSMODG00000010232	UPF3B	94	70.773	Monodelphis_domestica
ENSVPAG00000009971	UPF3B	98	48.571	ENSMODG00000003159	UPF3A	91	48.341	Monodelphis_domestica
ENSVPAG00000009971	UPF3B	53	70.136	ENSMALG00000008042	upf3b	84	58.416	Monopterus_albus
ENSVPAG00000009971	UPF3B	100	81.796	MGP_CAROLIEiJ_G0032999	Upf3b	91	86.809	Mus_caroli
ENSVPAG00000009971	UPF3B	100	82.282	ENSMUSG00000036572	Upf3b	90	87.234	Mus_musculus
ENSVPAG00000009971	UPF3B	100	82.282	MGP_PahariEiJ_G0031543	Upf3b	91	86.809	Mus_pahari
ENSVPAG00000009971	UPF3B	100	82.282	MGP_SPRETEiJ_G0034152	Upf3b	91	87.234	Mus_spretus
ENSVPAG00000009971	UPF3B	97	93.734	ENSMPUG00000001531	UPF3B	84	93.734	Mustela_putorius_furo
ENSVPAG00000009971	UPF3B	100	93.902	ENSMLUG00000010821	UPF3B	84	93.902	Myotis_lucifugus
ENSVPAG00000009971	UPF3B	100	81.311	ENSNGAG00000008231	Upf3b	85	82.767	Nannospalax_galili
ENSVPAG00000009971	UPF3B	100	95.854	ENSNLEG00000014897	UPF3B	85	95.854	Nomascus_leucogenys
ENSVPAG00000009971	UPF3B	93	46.056	ENSNLEG00000007563	UPF3A	76	41.902	Nomascus_leucogenys
ENSVPAG00000009971	UPF3B	70	83.582	ENSMEUG00000015615	UPF3B	75	83.704	Notamacropus_eugenii
ENSVPAG00000009971	UPF3B	100	83.659	ENSODEG00000002186	-	84	83.415	Octodon_degus
ENSVPAG00000009971	UPF3B	100	56.532	ENSONIG00000002536	upf3b	88	57.583	Oreochromis_niloticus
ENSVPAG00000009971	UPF3B	99	62.590	ENSOANG00000002594	-	94	62.350	Ornithorhynchus_anatinus
ENSVPAG00000009971	UPF3B	100	95.610	ENSOCUG00000010213	UPF3B	85	95.610	Oryctolagus_cuniculus
ENSVPAG00000009971	UPF3B	92	56.923	ENSORLG00000001026	upf3b	88	55.699	Oryzias_latipes
ENSVPAG00000009971	UPF3B	92	41.584	ENSORLG00020014317	upf3a	76	45.980	Oryzias_latipes_hni
ENSVPAG00000009971	UPF3B	92	56.122	ENSORLG00020003758	upf3b	81	56.378	Oryzias_latipes_hni
ENSVPAG00000009971	UPF3B	93	56.154	ENSORLG00015012954	upf3b	82	56.154	Oryzias_latipes_hsok
ENSVPAG00000009971	UPF3B	93	57.143	ENSOMEG00000014736	upf3b	82	57.143	Oryzias_melastigma
ENSVPAG00000009971	UPF3B	100	91.951	ENSOGAG00000004643	-	84	91.951	Otolemur_garnettii
ENSVPAG00000009971	UPF3B	97	79.000	ENSOGAG00000033003	-	84	79.500	Otolemur_garnettii
ENSVPAG00000009971	UPF3B	99	68.059	ENSOARG00000007869	-	92	64.792	Ovis_aries
ENSVPAG00000009971	UPF3B	100	96.368	ENSOARG00000016051	-	85	96.368	Ovis_aries
ENSVPAG00000009971	UPF3B	100	95.610	ENSPPAG00000040390	UPF3B	85	95.610	Pan_paniscus
ENSVPAG00000009971	UPF3B	98	45.060	ENSPPAG00000042267	UPF3A	80	45.060	Pan_paniscus
ENSVPAG00000009971	UPF3B	100	96.585	ENSPPRG00000023536	UPF3B	85	96.585	Panthera_pardus
ENSVPAG00000009971	UPF3B	98	45.412	ENSPPRG00000025062	UPF3A	81	41.363	Panthera_pardus
ENSVPAG00000009971	UPF3B	100	91.509	ENSPTIG00000015264	UPF3B	85	93.396	Panthera_tigris_altaica
ENSVPAG00000009971	UPF3B	98	37.470	ENSPTRG00000051640	-	84	34.152	Pan_troglodytes
ENSVPAG00000009971	UPF3B	100	95.610	ENSPTRG00000022228	UPF3B	85	95.610	Pan_troglodytes
ENSVPAG00000009971	UPF3B	98	45.060	ENSPTRG00000006073	UPF3A	80	45.060	Pan_troglodytes
ENSVPAG00000009971	UPF3B	100	95.610	ENSPANG00000000900	UPF3B	85	95.610	Papio_anubis
ENSVPAG00000009971	UPF3B	100	53.066	ENSPKIG00000019226	upf3b	87	55.504	Paramormyrops_kingsleyae
ENSVPAG00000009971	UPF3B	66	72.000	ENSPSIG00000005833	UPF3B	92	72.059	Pelodiscus_sinensis
ENSVPAG00000009971	UPF3B	95	50.361	ENSPSIG00000007468	UPF3A	93	49.289	Pelodiscus_sinensis
ENSVPAG00000009971	UPF3B	100	87.893	ENSPEMG00000012352	Upf3b	85	88.136	Peromyscus_maniculatus_bairdii
ENSVPAG00000009971	UPF3B	97	68.642	ENSPCIG00000028914	UPF3B	84	66.184	Phascolarctos_cinereus
ENSVPAG00000009971	UPF3B	71	58.382	ENSPCIG00000019590	-	53	69.421	Phascolarctos_cinereus
ENSVPAG00000009971	UPF3B	95	55.980	ENSPLAG00000019922	upf3b	84	56.500	Poecilia_latipinna
ENSVPAG00000009971	UPF3B	52	66.667	ENSPLAG00000011960	upf3a	77	47.583	Poecilia_latipinna
ENSVPAG00000009971	UPF3B	95	55.980	ENSPLAG00000005105	upf3b	84	56.500	Poecilia_latipinna
ENSVPAG00000009971	UPF3B	95	56.234	ENSPMEG00000023532	upf3b	84	57.360	Poecilia_mexicana
ENSVPAG00000009971	UPF3B	98	45.060	ENSPPYG00000005536	UPF3A	79	45.060	Pongo_abelii
ENSVPAG00000009971	UPF3B	63	99.043	ENSPPYG00000020675	-	78	99.043	Pongo_abelii
ENSVPAG00000009971	UPF3B	100	91.707	ENSPCAG00000009464	UPF3B	85	91.707	Procavia_capensis
ENSVPAG00000009971	UPF3B	100	95.134	ENSPCOG00000021960	UPF3B	85	95.134	Propithecus_coquereli
ENSVPAG00000009971	UPF3B	100	79.512	ENSPVAG00000014075	UPF3B	85	79.512	Pteropus_vampyrus
ENSVPAG00000009971	UPF3B	95	56.927	ENSPNYG00000009846	upf3b	84	57.789	Pundamilia_nyererei
ENSVPAG00000009971	UPF3B	100	55.869	ENSPNAG00000021528	upf3b	87	56.808	Pygocentrus_nattereri
ENSVPAG00000009971	UPF3B	100	85.922	ENSRNOG00000039994	Upf3b	85	86.165	Rattus_norvegicus
ENSVPAG00000009971	UPF3B	97	92.947	ENSRBIG00000037219	UPF3B	100	92.947	Rhinopithecus_bieti
ENSVPAG00000009971	UPF3B	100	95.610	ENSRROG00000041031	UPF3B	85	95.610	Rhinopithecus_roxellana
ENSVPAG00000009971	UPF3B	90	46.316	ENSSBOG00000029989	UPF3A	80	41.489	Saimiri_boliviensis_boliviensis
ENSVPAG00000009971	UPF3B	100	95.854	ENSSBOG00000019740	UPF3B	85	95.854	Saimiri_boliviensis_boliviensis
ENSVPAG00000009971	UPF3B	97	47.393	ENSSHAG00000009895	UPF3A	92	47.857	Sarcophilus_harrisii
ENSVPAG00000009971	UPF3B	97	71.007	ENSSHAG00000008634	UPF3B	82	70.762	Sarcophilus_harrisii
ENSVPAG00000009971	UPF3B	100	57.452	ENSSFOG00015005614	upf3b	88	59.233	Scleropages_formosus
ENSVPAG00000009971	UPF3B	92	55.357	ENSSMAG00000012913	upf3b	65	75.253	Scophthalmus_maximus
ENSVPAG00000009971	UPF3B	95	50.374	ENSSDUG00000005682	upf3b	84	51.493	Seriola_dumerili
ENSVPAG00000009971	UPF3B	95	53.333	ENSSLDG00000003130	upf3b	84	51.493	Seriola_lalandi_dorsalis
ENSVPAG00000009971	UPF3B	100	86.441	ENSSARG00000004147	UPF3B	95	86.441	Sorex_araneus
ENSVPAG00000009971	UPF3B	91	34.817	ENSSARG00000007262	UPF3A	87	32.902	Sorex_araneus
ENSVPAG00000009971	UPF3B	99	64.524	ENSSPUG00000013082	UPF3B	84	62.945	Sphenodon_punctatus
ENSVPAG00000009971	UPF3B	95	55.164	ENSSPAG00000009989	upf3b	84	56.608	Stegastes_partitus
ENSVPAG00000009971	UPF3B	100	94.634	ENSSSCG00000012617	UPF3B	84	94.634	Sus_scrofa
ENSVPAG00000009971	UPF3B	92	51.157	ENSTGUG00000009493	UPF3A	91	50.382	Taeniopygia_guttata
ENSVPAG00000009971	UPF3B	99	67.952	ENSTGUG00000003413	UPF3B	94	68.193	Taeniopygia_guttata
ENSVPAG00000009971	UPF3B	96	54.839	ENSTRUG00000010645	upf3b	86	56.296	Takifugu_rubripes
ENSVPAG00000009971	UPF3B	93	53.213	ENSTNIG00000015763	upf3b	81	51.795	Tetraodon_nigroviridis
ENSVPAG00000009971	UPF3B	100	76.829	ENSTBEG00000003229	UPF3B	85	76.829	Tupaia_belangeri
ENSVPAG00000009971	UPF3B	91	46.056	ENSTTRG00000015414	UPF3A	75	39.948	Tursiops_truncatus
ENSVPAG00000009971	UPF3B	100	90.361	ENSUAMG00000024565	UPF3B	84	90.534	Ursus_americanus
ENSVPAG00000009971	UPF3B	100	90.024	ENSUMAG00000002150	UPF3B	85	89.294	Ursus_maritimus
ENSVPAG00000009971	UPF3B	100	91.220	ENSVVUG00000011594	UPF3B	84	91.220	Vulpes_vulpes
ENSVPAG00000009971	UPF3B	97	53.431	ENSXETG00000007440	upf3b	87	53.941	Xenopus_tropicalis
ENSVPAG00000009971	UPF3B	92	43.264	ENSXETG00000002572	upf3a	83	41.388	Xenopus_tropicalis
ENSVPAG00000009971	UPF3B	95	52.525	ENSXCOG00000016586	upf3b	67	76.296	Xiphophorus_couchianus
ENSVPAG00000009971	UPF3B	95	54.926	ENSXMAG00000013680	upf3b	86	54.926	Xiphophorus_maculatus