EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVPAG00000010029 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 47735 bases
Position: chrGeneScaffold_612:74421-122155
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000009332	RRM_1	PF00076.22	3.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000010029	PSPC1-201	1200	-	ENSVPAP00000009332	399 (aa)	-	UPI00018BCBC6

Gene Model

Click here to download ENSVPAG00000010029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000010029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVPAG00000010029	PSPC1	100	58.396	ENSVPAG00000002272	NONO	63	69.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000010029	PSPC1	100	99.499	ENSG00000121390	PSPC1	76	99.499	Homo_sapiens
ENSVPAG00000010029	PSPC1	100	70.361	ENSAPOG00000015946	pspc1	67	73.641	Acanthochromis_polyacanthus
ENSVPAG00000010029	PSPC1	100	98.997	ENSAMEG00000017420	PSPC1	77	98.997	Ailuropoda_melanoleuca
ENSVPAG00000010029	PSPC1	100	60.636	ENSACIG00000018695	pspc1	74	57.946	Amphilophus_citrinellus
ENSVPAG00000010029	PSPC1	100	68.825	ENSAOCG00000005279	pspc1	66	73.098	Amphiprion_ocellaris
ENSVPAG00000010029	PSPC1	100	70.098	ENSAPEG00000015927	pspc1	67	73.098	Amphiprion_percula
ENSVPAG00000010029	PSPC1	100	55.990	ENSATEG00000004878	pspc1	64	60.057	Anabas_testudineus
ENSVPAG00000010029	PSPC1	100	94.750	ENSAPLG00000006246	PSPC1	99	94.750	Anas_platyrhynchos
ENSVPAG00000010029	PSPC1	100	59.057	ENSAPLG00000003643	SFPQ	57	68.317	Anas_platyrhynchos
ENSVPAG00000010029	PSPC1	100	90.571	ENSACAG00000002093	PSPC1	76	90.819	Anolis_carolinensis
ENSVPAG00000010029	PSPC1	100	99.248	ENSANAG00000000059	PSPC1	77	99.248	Aotus_nancymaae
ENSVPAG00000010029	PSPC1	100	60.099	ENSACLG00000027220	pspc1	74	56.373	Astatotilapia_calliptera
ENSVPAG00000010029	PSPC1	100	67.225	ENSAMXG00000036881	pspc1	76	69.398	Astyanax_mexicanus
ENSVPAG00000010029	PSPC1	100	98.997	ENSBTAG00000003934	PSPC1	77	98.997	Bos_taurus
ENSVPAG00000010029	PSPC1	100	99.248	ENSCJAG00000004554	PSPC1	77	99.248	Callithrix_jacchus
ENSVPAG00000010029	PSPC1	100	98.997	ENSCAFG00020002009	PSPC1	77	98.997	Canis_lupus_dingo
ENSVPAG00000010029	PSPC1	100	98.997	ENSCHIG00000016708	PSPC1	77	98.997	Capra_hircus
ENSVPAG00000010029	PSPC1	100	91.542	ENSTSYG00000032882	PSPC1	88	88.778	Carlito_syrichta
ENSVPAG00000010029	PSPC1	100	97.995	ENSCPOG00000000395	PSPC1	77	97.995	Cavia_porcellus
ENSVPAG00000010029	PSPC1	100	99.248	ENSCCAG00000033498	PSPC1	77	99.248	Cebus_capucinus
ENSVPAG00000010029	PSPC1	100	99.248	ENSCATG00000036434	PSPC1	76	99.248	Cercocebus_atys
ENSVPAG00000010029	PSPC1	100	98.246	ENSCLAG00000005241	PSPC1	89	98.246	Chinchilla_lanigera
ENSVPAG00000010029	PSPC1	100	91.479	ENSCHOG00000008913	PSPC1	76	91.228	Choloepus_hoffmanni
ENSVPAG00000010029	PSPC1	100	94.250	ENSCPBG00000020859	PSPC1	76	94.250	Chrysemys_picta_bellii
ENSVPAG00000010029	PSPC1	100	86.717	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSVPAG00000010029	PSPC1	100	98.246	ENSCGRG00001018368	Pspc1	76	98.246	Cricetulus_griseus_chok1gshd
ENSVPAG00000010029	PSPC1	100	98.246	ENSCGRG00000011724	Pspc1	76	98.246	Cricetulus_griseus_crigri
ENSVPAG00000010029	PSPC1	100	65.602	ENSCVAG00000007679	-	75	64.373	Cyprinodon_variegatus
ENSVPAG00000010029	PSPC1	100	70.732	ENSDARG00000006621	pspc1	99	67.805	Danio_rerio
ENSVPAG00000010029	PSPC1	100	98.747	ENSDNOG00000011078	PSPC1	76	98.747	Dasypus_novemcinctus
ENSVPAG00000010029	PSPC1	100	98.496	ENSDORG00000016050	Pspc1	77	98.496	Dipodomys_ordii
ENSVPAG00000010029	PSPC1	72	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSVPAG00000010029	PSPC1	57	48.606	ENSEBUG00000010133	pspc1	57	52.273	Eptatretus_burgeri
ENSVPAG00000010029	PSPC1	100	57.583	ENSEBUG00000003964	-	51	73.498	Eptatretus_burgeri
ENSVPAG00000010029	PSPC1	100	99.499	ENSEASG00005000119	PSPC1	77	99.499	Equus_asinus_asinus
ENSVPAG00000010029	PSPC1	100	99.499	ENSECAG00000017286	PSPC1	77	99.499	Equus_caballus
ENSVPAG00000010029	PSPC1	84	83.838	ENSEEUG00000011288	-	65	83.838	Erinaceus_europaeus
ENSVPAG00000010029	PSPC1	100	70.803	ENSELUG00000003746	pspc1	76	71.703	Esox_lucius
ENSVPAG00000010029	PSPC1	100	99.248	ENSFCAG00000027841	PSPC1	77	99.248	Felis_catus
ENSVPAG00000010029	PSPC1	100	94.750	ENSFALG00000008750	PSPC1	76	94.750	Ficedula_albicollis
ENSVPAG00000010029	PSPC1	100	97.995	ENSFDAG00000002617	PSPC1	78	97.995	Fukomys_damarensis
ENSVPAG00000010029	PSPC1	100	63.902	ENSGMOG00000015074	pspc1	74	64.020	Gadus_morhua
ENSVPAG00000010029	PSPC1	100	94.750	ENSGALG00000017142	PSPC1	76	94.750	Gallus_gallus
ENSVPAG00000010029	PSPC1	66	79.924	ENSGAFG00000006327	pspc1	55	79.924	Gambusia_affinis
ENSVPAG00000010029	PSPC1	99	64.677	ENSGACG00000014901	pspc1	74	73.962	Gasterosteus_aculeatus
ENSVPAG00000010029	PSPC1	100	94.250	ENSGAGG00000019164	PSPC1	76	94.250	Gopherus_agassizii
ENSVPAG00000010029	PSPC1	100	99.248	ENSGGOG00000003414	PSPC1	76	99.248	Gorilla_gorilla
ENSVPAG00000010029	PSPC1	100	69.554	ENSHBUG00000001139	pspc1	75	69.059	Haplochromis_burtoni
ENSVPAG00000010029	PSPC1	100	97.995	ENSHGLG00000018811	PSPC1	77	97.995	Heterocephalus_glaber_female
ENSVPAG00000010029	PSPC1	57	100.000	ENSHGLG00100007962	PSPC1	69	100.000	Heterocephalus_glaber_male
ENSVPAG00000010029	PSPC1	79	71.651	ENSHCOG00000013251	pspc1	69	72.436	Hippocampus_comes
ENSVPAG00000010029	PSPC1	100	72.372	ENSIPUG00000013192	pspc1	76	72.127	Ictalurus_punctatus
ENSVPAG00000010029	PSPC1	100	99.499	ENSSTOG00000026833	PSPC1	76	99.499	Ictidomys_tridecemlineatus
ENSVPAG00000010029	PSPC1	100	98.246	ENSJJAG00000018334	Pspc1	76	98.246	Jaculus_jaculus
ENSVPAG00000010029	PSPC1	100	53.616	ENSKMAG00000013525	-	70	52.357	Kryptolebias_marmoratus
ENSVPAG00000010029	PSPC1	99	66.905	ENSLBEG00000004474	pspc1	64	73.371	Labrus_bergylta
ENSVPAG00000010029	PSPC1	100	85.500	ENSLACG00000010762	PSPC1	76	85.500	Latimeria_chalumnae
ENSVPAG00000010029	PSPC1	100	85.464	ENSLOCG00000010832	pspc1	78	85.464	Lepisosteus_oculatus
ENSVPAG00000010029	PSPC1	100	98.997	ENSLAFG00000010968	PSPC1	76	98.997	Loxodonta_africana
ENSVPAG00000010029	PSPC1	100	99.248	ENSMFAG00000032728	PSPC1	76	99.248	Macaca_fascicularis
ENSVPAG00000010029	PSPC1	100	99.248	ENSMMUG00000020262	PSPC1	76	99.248	Macaca_mulatta
ENSVPAG00000010029	PSPC1	100	99.248	ENSMNEG00000027401	PSPC1	76	99.248	Macaca_nemestrina
ENSVPAG00000010029	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	94	99.248	Mandrillus_leucophaeus
ENSVPAG00000010029	PSPC1	100	66.903	ENSMAMG00000004333	pspc1	66	72.011	Mastacembelus_armatus
ENSVPAG00000010029	PSPC1	100	60.099	ENSMZEG00005005726	pspc1	74	56.373	Maylandia_zebra
ENSVPAG00000010029	PSPC1	100	94.750	ENSMGAG00000015134	PSPC1	99	94.750	Meleagris_gallopavo
ENSVPAG00000010029	PSPC1	85	91.420	ENSMAUG00000021067	Pspc1	72	91.420	Mesocricetus_auratus
ENSVPAG00000010029	PSPC1	100	98.997	ENSMICG00000013970	PSPC1	77	98.997	Microcebus_murinus
ENSVPAG00000010029	PSPC1	100	98.246	ENSMOCG00000006060	Pspc1	76	98.246	Microtus_ochrogaster
ENSVPAG00000010029	PSPC1	90	97.784	ENSMODG00000008029	PSPC1	58	97.784	Monodelphis_domestica
ENSVPAG00000010029	PSPC1	100	69.307	ENSMALG00000008914	pspc1	75	67.488	Monopterus_albus
ENSVPAG00000010029	PSPC1	100	98.000	MGP_CAROLIEiJ_G0019341	Pspc1	76	98.000	Mus_caroli
ENSVPAG00000010029	PSPC1	100	98.250	ENSMUSG00000021938	Pspc1	76	98.250	Mus_musculus
ENSVPAG00000010029	PSPC1	100	98.500	MGP_PahariEiJ_G0030359	Pspc1	76	98.500	Mus_pahari
ENSVPAG00000010029	PSPC1	100	98.250	MGP_SPRETEiJ_G0020232	Pspc1	76	98.250	Mus_spretus
ENSVPAG00000010029	PSPC1	100	98.997	ENSMPUG00000013347	PSPC1	77	98.997	Mustela_putorius_furo
ENSVPAG00000010029	PSPC1	100	97.761	ENSMLUG00000017663	PSPC1	77	97.761	Myotis_lucifugus
ENSVPAG00000010029	PSPC1	100	98.496	ENSNGAG00000011271	Pspc1	76	98.496	Nannospalax_galili
ENSVPAG00000010029	PSPC1	66	73.004	ENSNBRG00000014059	pspc1	61	68.539	Neolamprologus_brichardi
ENSVPAG00000010029	PSPC1	100	99.499	ENSNLEG00000001294	PSPC1	76	99.499	Nomascus_leucogenys
ENSVPAG00000010029	PSPC1	79	100.000	ENSMEUG00000000476	PSPC1	61	100.000	Notamacropus_eugenii
ENSVPAG00000010029	PSPC1	100	83.709	ENSODEG00000007817	-	75	78.765	Octodon_degus
ENSVPAG00000010029	PSPC1	100	85.000	ENSODEG00000019012	-	76	86.173	Octodon_degus
ENSVPAG00000010029	PSPC1	100	69.802	ENSONIG00000012010	pspc1	75	68.293	Oreochromis_niloticus
ENSVPAG00000010029	PSPC1	100	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSVPAG00000010029	PSPC1	100	70.324	ENSOANG00000011381	-	79	69.825	Ornithorhynchus_anatinus
ENSVPAG00000010029	PSPC1	100	98.747	ENSOCUG00000006153	PSPC1	76	98.747	Oryctolagus_cuniculus
ENSVPAG00000010029	PSPC1	100	70.098	ENSORLG00000004232	-	75	63.420	Oryzias_latipes
ENSVPAG00000010029	PSPC1	100	69.363	ENSORLG00020000578	PSPC1	75	65.526	Oryzias_latipes_hni
ENSVPAG00000010029	PSPC1	100	70.588	ENSORLG00015017480	pspc1	70	68.533	Oryzias_latipes_hsok
ENSVPAG00000010029	PSPC1	53	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSVPAG00000010029	PSPC1	100	99.248	ENSOGAG00000012643	PSPC1	76	99.248	Otolemur_garnettii
ENSVPAG00000010029	PSPC1	100	98.504	ENSOARG00000014163	PSPC1	83	98.504	Ovis_aries
ENSVPAG00000010029	PSPC1	100	91.729	ENSPPAG00000009836	PSPC1	83	91.729	Pan_paniscus
ENSVPAG00000010029	PSPC1	100	99.248	ENSPPRG00000008833	PSPC1	77	99.248	Panthera_pardus
ENSVPAG00000010029	PSPC1	100	98.997	ENSPTIG00000016917	PSPC1	84	98.997	Panthera_tigris_altaica
ENSVPAG00000010029	PSPC1	98	97.436	ENSPTRG00000005677	PSPC1	74	100.000	Pan_troglodytes
ENSVPAG00000010029	PSPC1	100	99.248	ENSPANG00000001992	PSPC1	76	99.248	Papio_anubis
ENSVPAG00000010029	PSPC1	91	79.063	ENSPKIG00000003578	pspc1	77	74.757	Paramormyrops_kingsleyae
ENSVPAG00000010029	PSPC1	100	94.000	ENSPSIG00000005168	PSPC1	76	94.000	Pelodiscus_sinensis
ENSVPAG00000010029	PSPC1	57	77.093	ENSPMGG00000015135	pspc1	62	76.991	Periophthalmus_magnuspinnatus
ENSVPAG00000010029	PSPC1	100	98.496	ENSPEMG00000015214	Pspc1	76	98.496	Peromyscus_maniculatus_bairdii
ENSVPAG00000010029	PSPC1	50	49.756	ENSPMAG00000004618	pspc1	62	49.756	Petromyzon_marinus
ENSVPAG00000010029	PSPC1	100	97.494	ENSPCIG00000017680	PSPC1	76	97.494	Phascolarctos_cinereus
ENSVPAG00000010029	PSPC1	100	68.460	ENSPFOG00000003362	pspc1	76	67.229	Poecilia_formosa
ENSVPAG00000010029	PSPC1	100	68.949	ENSPLAG00000011540	pspc1	75	67.229	Poecilia_latipinna
ENSVPAG00000010029	PSPC1	100	68.704	ENSPMEG00000008322	pspc1	75	66.988	Poecilia_mexicana
ENSVPAG00000010029	PSPC1	100	68.949	ENSPREG00000007786	pspc1	75	67.229	Poecilia_reticulata
ENSVPAG00000010029	PSPC1	100	98.997	ENSPPYG00000005186	PSPC1	77	98.997	Pongo_abelii
ENSVPAG00000010029	PSPC1	100	93.484	ENSPCOG00000014364	PSPC1	75	93.484	Propithecus_coquereli
ENSVPAG00000010029	PSPC1	100	95.489	ENSPVAG00000005036	PSPC1	77	95.489	Pteropus_vampyrus
ENSVPAG00000010029	PSPC1	100	60.099	ENSPNYG00000008893	pspc1	74	56.543	Pundamilia_nyererei
ENSVPAG00000010029	PSPC1	100	71.394	ENSPNAG00000016511	pspc1	77	71.638	Pygocentrus_nattereri
ENSVPAG00000010029	PSPC1	100	98.246	ENSRNOG00000020782	Pspc1	76	98.246	Rattus_norvegicus
ENSVPAG00000010029	PSPC1	100	99.499	ENSRBIG00000036057	PSPC1	82	99.499	Rhinopithecus_bieti
ENSVPAG00000010029	PSPC1	100	99.499	ENSRROG00000036334	PSPC1	76	99.499	Rhinopithecus_roxellana
ENSVPAG00000010029	PSPC1	100	91.980	ENSSBOG00000028172	PSPC1	86	100.000	Saimiri_boliviensis_boliviensis
ENSVPAG00000010029	PSPC1	100	90.773	ENSSHAG00000004696	PSPC1	76	90.773	Sarcophilus_harrisii
ENSVPAG00000010029	PSPC1	91	80.165	ENSSFOG00015001395	pspc1	86	76.329	Scleropages_formosus
ENSVPAG00000010029	PSPC1	100	66.667	ENSSMAG00000001761	pspc1	67	78.439	Scophthalmus_maximus
ENSVPAG00000010029	PSPC1	100	68.213	ENSSDUG00000010651	pspc1	64	74.457	Seriola_dumerili
ENSVPAG00000010029	PSPC1	100	63.342	ENSSLDG00000004284	pspc1	73	57.664	Seriola_lalandi_dorsalis
ENSVPAG00000010029	PSPC1	100	90.727	ENSSARG00000000888	PSPC1	77	90.727	Sorex_araneus
ENSVPAG00000010029	PSPC1	100	78.803	ENSSPUG00000008550	PSPC1	75	79.052	Sphenodon_punctatus
ENSVPAG00000010029	PSPC1	100	67.849	ENSSPAG00000001921	pspc1	76	65.721	Stegastes_partitus
ENSVPAG00000010029	PSPC1	100	98.997	ENSSSCG00000009569	PSPC1	77	98.997	Sus_scrofa
ENSVPAG00000010029	PSPC1	100	94.750	ENSTGUG00000011295	PSPC1	86	94.750	Taeniopygia_guttata
ENSVPAG00000010029	PSPC1	100	63.081	ENSTRUG00000011335	pspc1	75	61.634	Takifugu_rubripes
ENSVPAG00000010029	PSPC1	100	65.099	ENSTNIG00000010358	pspc1	75	62.035	Tetraodon_nigroviridis
ENSVPAG00000010029	PSPC1	100	82.957	ENSTBEG00000002361	PSPC1	77	80.702	Tupaia_belangeri
ENSVPAG00000010029	PSPC1	100	98.997	ENSTTRG00000003343	PSPC1	77	98.997	Tursiops_truncatus
ENSVPAG00000010029	PSPC1	57	100.000	ENSUAMG00000012309	PSPC1	65	100.000	Ursus_americanus
ENSVPAG00000010029	PSPC1	100	98.747	ENSUMAG00000013993	PSPC1	82	98.747	Ursus_maritimus
ENSVPAG00000010029	PSPC1	100	98.997	ENSVVUG00000006414	PSPC1	77	98.997	Vulpes_vulpes
ENSVPAG00000010029	PSPC1	66	78.788	ENSXCOG00000017438	pspc1	62	78.788	Xiphophorus_couchianus
ENSVPAG00000010029	PSPC1	66	79.167	ENSXMAG00000007929	pspc1	62	79.167	Xiphophorus_maculatus