EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSVPAG00000010709 (Gene tree)
Gene ID
-
Gene Symbol
LSM3
Alias
SMX4|USS2|YLR438C
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Vicugna_pacos
Status
putative
Strand
Plus strand
Length
6200 bases
Position
chrGeneScaffold_2740:1875-8074
Accession
17874
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSVPAP00000009970LSMPF01423.221.6e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSVPAT00000010708LSM3-201288-ENSVPAP0000000997095 (aa)-UPI000036B3D0
Gene Model
Click here to download ENSVPAG00000010709's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000010709's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSVPAG00000010709LSM37934.667ENSVPAG00000009985LSM58234.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSVPAG00000010709LSM3100100.000ENSG00000170860LSM393100.000Homo_sapiens
ENSVPAG00000010709LSM310096.842ENSAPOG00000018947lsm39396.842Acanthochromis_polyacanthus
ENSVPAG00000010709LSM3100100.000ENSAMEG00000009405LSM393100.000Ailuropoda_melanoleuca
ENSVPAG00000010709LSM310095.789ENSACIG00000004574lsm36695.789Amphilophus_citrinellus
ENSVPAG00000010709LSM310096.842ENSAOCG00000007658lsm39396.842Amphiprion_ocellaris
ENSVPAG00000010709LSM310096.842ENSAPEG00000018621lsm39396.842Amphiprion_percula
ENSVPAG00000010709LSM310096.842ENSATEG00000005153lsm39396.842Anabas_testudineus
ENSVPAG00000010709LSM3100100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSVPAG00000010709LSM3100100.000ENSACAG00000013503LSM393100.000Anolis_carolinensis
ENSVPAG00000010709LSM310096.842ENSANAG00000002903-9396.842Aotus_nancymaae
ENSVPAG00000010709LSM3100100.000ENSANAG00000034627LSM393100.000Aotus_nancymaae
ENSVPAG00000010709LSM310096.842ENSACLG00000001726-9296.842Astatotilapia_calliptera
ENSVPAG00000010709LSM310098.947ENSAMXG00000041214lsm39398.947Astyanax_mexicanus
ENSVPAG00000010709LSM3100100.000ENSBTAG00000007363LSM399100.000Bos_taurus
ENSVPAG00000010709LSM39775.000WBGene00003077lsm-39075.000Caenorhabditis_elegans
ENSVPAG00000010709LSM310097.895ENSCAFG00000001760LSM39397.895Canis_familiaris
ENSVPAG00000010709LSM310097.895ENSCAFG00020017266-9397.895Canis_lupus_dingo
ENSVPAG00000010709LSM310090.526ENSCAFG00020016680-9390.526Canis_lupus_dingo
ENSVPAG00000010709LSM310097.895ENSCAFG00020021584-9397.895Canis_lupus_dingo
ENSVPAG00000010709LSM310096.842ENSCAFG00020026452-9396.842Canis_lupus_dingo
ENSVPAG00000010709LSM310090.000ENSCAFG00020020950-9390.000Canis_lupus_dingo
ENSVPAG00000010709LSM3100100.000ENSCHIG00000024650LSM393100.000Capra_hircus
ENSVPAG00000010709LSM39979.787ENSTSYG00000028528-9179.787Carlito_syrichta
ENSVPAG00000010709LSM3100100.000ENSTSYG00000005204-93100.000Carlito_syrichta
ENSVPAG00000010709LSM3100100.000ENSCAPG00000015760LSM399100.000Cavia_aperea
ENSVPAG00000010709LSM3100100.000ENSCPOG00000034071LSM393100.000Cavia_porcellus
ENSVPAG00000010709LSM3100100.000ENSCCAG00000036499-93100.000Cebus_capucinus
ENSVPAG00000010709LSM310080.000ENSCCAG00000032763-9380.000Cebus_capucinus
ENSVPAG00000010709LSM3100100.000ENSCCAG00000019503-93100.000Cebus_capucinus
ENSVPAG00000010709LSM39978.723ENSCATG00000031630-9178.723Cercocebus_atys
ENSVPAG00000010709LSM3100100.000ENSCATG00000039421LSM393100.000Cercocebus_atys
ENSVPAG00000010709LSM3100100.000ENSCLAG00000015997LSM393100.000Chinchilla_lanigera
ENSVPAG00000010709LSM310094.737ENSCSAG00000019525-9394.737Chlorocebus_sabaeus
ENSVPAG00000010709LSM3100100.000ENSCPBG00000014531LSM393100.000Chrysemys_picta_bellii
ENSVPAG00000010709LSM39883.871ENSCSAVG00000009542-8983.871Ciona_savignyi
ENSVPAG00000010709LSM310095.789ENSCANG00000018782-9395.789Colobus_angolensis_palliatus
ENSVPAG00000010709LSM3100100.000ENSCANG00000033944-93100.000Colobus_angolensis_palliatus
ENSVPAG00000010709LSM310096.842ENSCANG00000038037-9396.842Colobus_angolensis_palliatus
ENSVPAG00000010709LSM310077.083ENSCGRG00001008639-9777.083Cricetulus_griseus_chok1gshd
ENSVPAG00000010709LSM3100100.000ENSCGRG00001017598Lsm396100.000Cricetulus_griseus_chok1gshd
ENSVPAG00000010709LSM310084.211ENSCGRG00001011396-9584.211Cricetulus_griseus_chok1gshd
ENSVPAG00000010709LSM3100100.000ENSCGRG00000016159Lsm396100.000Cricetulus_griseus_crigri
ENSVPAG00000010709LSM310084.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSVPAG00000010709LSM310096.842ENSCSEG00000015071lsm37196.842Cynoglossus_semilaevis
ENSVPAG00000010709LSM39897.849ENSCVAG00000006933lsm39197.849Cyprinodon_variegatus
ENSVPAG00000010709LSM310098.947ENSDARG00000089663lsm39398.947Danio_rerio
ENSVPAG00000010709LSM3100100.000ENSDNOG00000030808LSM393100.000Dasypus_novemcinctus
ENSVPAG00000010709LSM310080.000ENSDORG00000024490-9280.000Dipodomys_ordii
ENSVPAG00000010709LSM3100100.000ENSDORG00000006894-93100.000Dipodomys_ordii
ENSVPAG00000010709LSM310078.947FBgn0051184LSm39278.947Drosophila_melanogaster
ENSVPAG00000010709LSM3100100.000ENSETEG00000016207LSM393100.000Echinops_telfairi
ENSVPAG00000010709LSM310092.632ENSEBUG00000004943lsm39392.632Eptatretus_burgeri
ENSVPAG00000010709LSM3100100.000ENSEASG00005015443LSM393100.000Equus_asinus_asinus
ENSVPAG00000010709LSM3100100.000ENSECAG00000007803LSM393100.000Equus_caballus
ENSVPAG00000010709LSM310097.895ENSELUG00000018922lsm39397.895Esox_lucius
ENSVPAG00000010709LSM3100100.000ENSFCAG00000038453LSM393100.000Felis_catus
ENSVPAG00000010709LSM310073.684ENSFCAG00000044344-9373.684Felis_catus
ENSVPAG00000010709LSM3100100.000ENSFALG00000012644LSM393100.000Ficedula_albicollis
ENSVPAG00000010709LSM3100100.000ENSFDAG00000011470LSM393100.000Fukomys_damarensis
ENSVPAG00000010709LSM310096.842ENSFHEG00000000876lsm39396.842Fundulus_heteroclitus
ENSVPAG00000010709LSM310096.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSVPAG00000010709LSM310096.842ENSGAFG00000013965lsm39396.842Gambusia_affinis
ENSVPAG00000010709LSM310096.842ENSGACG00000003488lsm39396.842Gasterosteus_aculeatus
ENSVPAG00000010709LSM3100100.000ENSGAGG00000025707LSM393100.000Gopherus_agassizii
ENSVPAG00000010709LSM3100100.000ENSGGOG00000010006LSM393100.000Gorilla_gorilla
ENSVPAG00000010709LSM310096.842ENSHBUG00000022399lsm39396.842Haplochromis_burtoni
ENSVPAG00000010709LSM3100100.000ENSHGLG00000000651LSM393100.000Heterocephalus_glaber_female
ENSVPAG00000010709LSM310078.947ENSHGLG00000015564-9278.947Heterocephalus_glaber_female
ENSVPAG00000010709LSM310078.947ENSHGLG00100010658-9278.947Heterocephalus_glaber_male
ENSVPAG00000010709LSM3100100.000ENSHGLG00100011343LSM393100.000Heterocephalus_glaber_male
ENSVPAG00000010709LSM310095.789ENSHCOG00000013481lsm39395.789Hippocampus_comes
ENSVPAG00000010709LSM310097.895ENSIPUG00000009207lsm39397.895Ictalurus_punctatus
ENSVPAG00000010709LSM3100100.000ENSSTOG00000006842LSM393100.000Ictidomys_tridecemlineatus
ENSVPAG00000010709LSM310090.526ENSJJAG00000012797-9390.526Jaculus_jaculus
ENSVPAG00000010709LSM310074.737ENSJJAG00000018311-9274.737Jaculus_jaculus
ENSVPAG00000010709LSM3100100.000ENSJJAG00000017351Lsm393100.000Jaculus_jaculus
ENSVPAG00000010709LSM310095.789ENSKMAG00000015182lsm39395.789Kryptolebias_marmoratus
ENSVPAG00000010709LSM310096.842ENSLBEG00000021292lsm39796.842Labrus_bergylta
ENSVPAG00000010709LSM310097.895ENSLOCG00000013560lsm39397.895Lepisosteus_oculatus
ENSVPAG00000010709LSM3100100.000ENSLAFG00000023308LSM392100.000Loxodonta_africana
ENSVPAG00000010709LSM3100100.000ENSMFAG00000003185LSM393100.000Macaca_fascicularis
ENSVPAG00000010709LSM310078.947ENSMMUG00000043596-9378.947Macaca_mulatta
ENSVPAG00000010709LSM39979.787ENSMMUG00000002294-9079.787Macaca_mulatta
ENSVPAG00000010709LSM3100100.000ENSMMUG00000023126LSM393100.000Macaca_mulatta
ENSVPAG00000010709LSM3100100.000ENSMNEG00000043632LSM393100.000Macaca_nemestrina
ENSVPAG00000010709LSM39979.787ENSMNEG00000037686-9179.787Macaca_nemestrina
ENSVPAG00000010709LSM3100100.000ENSMLEG00000036162LSM393100.000Mandrillus_leucophaeus
ENSVPAG00000010709LSM310096.842ENSMAMG00000012807lsm39396.842Mastacembelus_armatus
ENSVPAG00000010709LSM310096.842ENSMZEG00005016682lsm36896.842Maylandia_zebra
ENSVPAG00000010709LSM3100100.000ENSMGAG00000007776LSM399100.000Meleagris_gallopavo
ENSVPAG00000010709LSM310085.263ENSMICG00000027821-9385.263Microcebus_murinus
ENSVPAG00000010709LSM3100100.000ENSMICG00000032361-93100.000Microcebus_murinus
ENSVPAG00000010709LSM3100100.000ENSMOCG00000014269Lsm393100.000Microtus_ochrogaster
ENSVPAG00000010709LSM310095.789ENSMMOG00000020715lsm39395.789Mola_mola
ENSVPAG00000010709LSM3100100.000ENSMODG00000007275LSM396100.000Monodelphis_domestica
ENSVPAG00000010709LSM310096.842ENSMALG00000006485lsm39396.842Monopterus_albus
ENSVPAG00000010709LSM3100100.000ENSMUSG00000034192Lsm393100.000Mus_musculus
ENSVPAG00000010709LSM3100100.000MGP_PahariEiJ_G0022402Lsm393100.000Mus_pahari
ENSVPAG00000010709LSM3100100.000MGP_SPRETEiJ_G0029681Lsm393100.000Mus_spretus
ENSVPAG00000010709LSM39788.043ENSMPUG00000019120-9088.043Mustela_putorius_furo
ENSVPAG00000010709LSM38292.308ENSMPUG00000017256-9292.308Mustela_putorius_furo
ENSVPAG00000010709LSM310093.684ENSMLUG00000024700-9393.684Myotis_lucifugus
ENSVPAG00000010709LSM3100100.000ENSMLUG00000010677LSM393100.000Myotis_lucifugus
ENSVPAG00000010709LSM310073.684ENSNGAG00000013716-9273.684Nannospalax_galili
ENSVPAG00000010709LSM3100100.000ENSNGAG00000022450Lsm393100.000Nannospalax_galili
ENSVPAG00000010709LSM39980.851ENSNGAG00000010207-9280.851Nannospalax_galili
ENSVPAG00000010709LSM310096.842ENSNBRG00000014318lsm39396.842Neolamprologus_brichardi
ENSVPAG00000010709LSM3100100.000ENSNLEG00000005079LSM393100.000Nomascus_leucogenys
ENSVPAG00000010709LSM310090.526ENSNLEG00000030229-9390.526Nomascus_leucogenys
ENSVPAG00000010709LSM3100100.000ENSODEG00000001726LSM393100.000Octodon_degus
ENSVPAG00000010709LSM310098.947ENSODEG00000019740-9398.947Octodon_degus
ENSVPAG00000010709LSM310097.895ENSODEG00000019158-9397.895Octodon_degus
ENSVPAG00000010709LSM310092.632ENSODEG00000019403-9392.632Octodon_degus
ENSVPAG00000010709LSM310096.842ENSONIG00000021369-9396.842Oreochromis_niloticus
ENSVPAG00000010709LSM310096.842ENSONIG00000000370lsm39396.842Oreochromis_niloticus
ENSVPAG00000010709LSM3100100.000ENSOANG00000012273LSM393100.000Ornithorhynchus_anatinus
ENSVPAG00000010709LSM3100100.000ENSOCUG00000027653-93100.000Oryctolagus_cuniculus
ENSVPAG00000010709LSM395100.000ENSOCUG00000011088-88100.000Oryctolagus_cuniculus
ENSVPAG00000010709LSM310095.789ENSORLG00000025900lsm39395.789Oryzias_latipes
ENSVPAG00000010709LSM310095.789ENSORLG00020007125lsm39395.789Oryzias_latipes_hni
ENSVPAG00000010709LSM310095.789ENSORLG00015002944lsm39395.789Oryzias_latipes_hsok
ENSVPAG00000010709LSM310095.789ENSOMEG00000001915lsm39395.789Oryzias_melastigma
ENSVPAG00000010709LSM310089.474ENSOGAG00000033051-9389.474Otolemur_garnettii
ENSVPAG00000010709LSM3100100.000ENSOGAG00000007659-93100.000Otolemur_garnettii
ENSVPAG00000010709LSM310098.947ENSOGAG00000028858-9798.947Otolemur_garnettii
ENSVPAG00000010709LSM3100100.000ENSOARG00000000600LSM392100.000Ovis_aries
ENSVPAG00000010709LSM3100100.000ENSPPAG00000034074LSM393100.000Pan_paniscus
ENSVPAG00000010709LSM310098.947ENSPPRG00000020953-9398.947Panthera_pardus
ENSVPAG00000010709LSM3100100.000ENSPPRG00000012912-93100.000Panthera_pardus
ENSVPAG00000010709LSM310092.632ENSPPRG00000010610-8392.632Panthera_pardus
ENSVPAG00000010709LSM3100100.000ENSPTIG00000013072-93100.000Panthera_tigris_altaica
ENSVPAG00000010709LSM3100100.000ENSPTIG00000003463-93100.000Panthera_tigris_altaica
ENSVPAG00000010709LSM3100100.000ENSPTRG00000014650LSM393100.000Pan_troglodytes
ENSVPAG00000010709LSM310078.947ENSPANG00000032192-9378.947Papio_anubis
ENSVPAG00000010709LSM3100100.000ENSPANG00000009378LSM393100.000Papio_anubis
ENSVPAG00000010709LSM3100100.000ENSPKIG00000008037lsm385100.000Paramormyrops_kingsleyae
ENSVPAG00000010709LSM3100100.000ENSPSIG00000015720LSM393100.000Pelodiscus_sinensis
ENSVPAG00000010709LSM310094.737ENSPMGG00000012103lsm39694.737Periophthalmus_magnuspinnatus
ENSVPAG00000010709LSM3100100.000ENSPEMG00000015797Lsm393100.000Peromyscus_maniculatus_bairdii
ENSVPAG00000010709LSM310083.158ENSPEMG00000020213-9283.158Peromyscus_maniculatus_bairdii
ENSVPAG00000010709LSM310096.842ENSPFOG00000008372lsm39396.842Poecilia_formosa
ENSVPAG00000010709LSM310096.842ENSPLAG00000000563lsm39396.842Poecilia_latipinna
ENSVPAG00000010709LSM310096.842ENSPMEG00000022052lsm39396.842Poecilia_mexicana
ENSVPAG00000010709LSM310096.842ENSPREG00000022485lsm39396.842Poecilia_reticulata
ENSVPAG00000010709LSM3100100.000ENSPPYG00000013402LSM393100.000Pongo_abelii
ENSVPAG00000010709LSM3100100.000ENSPCAG00000017077LSM393100.000Procavia_capensis
ENSVPAG00000010709LSM3100100.000ENSPCOG00000016217-93100.000Propithecus_coquereli
ENSVPAG00000010709LSM39478.652ENSPCOG00000014435-8978.652Propithecus_coquereli
ENSVPAG00000010709LSM3100100.000ENSPVAG00000016795LSM393100.000Pteropus_vampyrus
ENSVPAG00000010709LSM310096.842ENSPNYG00000009552lsm36896.842Pundamilia_nyererei
ENSVPAG00000010709LSM310098.947ENSPNAG00000023467lsm39398.947Pygocentrus_nattereri
ENSVPAG00000010709LSM3100100.000ENSRNOG00000008733Lsm393100.000Rattus_norvegicus
ENSVPAG00000010709LSM310082.105ENSRBIG00000043783-9282.105Rhinopithecus_bieti
ENSVPAG00000010709LSM3100100.000ENSRBIG00000034399LSM393100.000Rhinopithecus_bieti
ENSVPAG00000010709LSM310083.158ENSRROG00000039868-9283.158Rhinopithecus_roxellana
ENSVPAG00000010709LSM310082.105ENSRROG00000044056-9382.105Rhinopithecus_roxellana
ENSVPAG00000010709LSM310088.421ENSRROG00000044047-9388.421Rhinopithecus_roxellana
ENSVPAG00000010709LSM3100100.000ENSRROG00000033276-93100.000Rhinopithecus_roxellana
ENSVPAG00000010709LSM3100100.000ENSSBOG00000024310LSM393100.000Saimiri_boliviensis_boliviensis
ENSVPAG00000010709LSM310098.947ENSSFOG00015007071lsm39398.947Scleropages_formosus
ENSVPAG00000010709LSM310096.842ENSSMAG00000001818lsm39396.842Scophthalmus_maximus
ENSVPAG00000010709LSM310096.842ENSSDUG00000006040lsm39396.842Seriola_dumerili
ENSVPAG00000010709LSM310096.842ENSSLDG00000006399lsm39396.842Seriola_lalandi_dorsalis
ENSVPAG00000010709LSM361100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSVPAG00000010709LSM3100100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSVPAG00000010709LSM310090.526ENSSPUG00000005394LSM39390.526Sphenodon_punctatus
ENSVPAG00000010709LSM310085.263ENSSPAG00000000934lsm39385.263Stegastes_partitus
ENSVPAG00000010709LSM3100100.000ENSSSCG00000011601LSM393100.000Sus_scrofa
ENSVPAG00000010709LSM39575.556ENSSSCG00000023718-9275.556Sus_scrofa
ENSVPAG00000010709LSM3100100.000ENSTGUG00000008327LSM393100.000Taeniopygia_guttata
ENSVPAG00000010709LSM310095.789ENSTRUG00000023175lsm39395.789Takifugu_rubripes
ENSVPAG00000010709LSM310095.789ENSTNIG00000005589lsm39395.789Tetraodon_nigroviridis
ENSVPAG00000010709LSM310089.474ENSTBEG00000001050-9289.474Tupaia_belangeri
ENSVPAG00000010709LSM3100100.000ENSTTRG00000011197LSM393100.000Tursiops_truncatus
ENSVPAG00000010709LSM3100100.000ENSUAMG00000017250-93100.000Ursus_americanus
ENSVPAG00000010709LSM3100100.000ENSUMAG00000015905LSM393100.000Ursus_maritimus
ENSVPAG00000010709LSM310094.737ENSVVUG00000005684-9394.737Vulpes_vulpes
ENSVPAG00000010709LSM310096.842ENSVVUG00000007332-8596.842Vulpes_vulpes
ENSVPAG00000010709LSM310091.579ENSVVUG00000024228-9391.579Vulpes_vulpes
ENSVPAG00000010709LSM310094.737ENSVVUG00000006481-9394.737Vulpes_vulpes
ENSVPAG00000010709LSM310096.842ENSVVUG00000029294-9396.842Vulpes_vulpes
ENSVPAG00000010709LSM3100100.000ENSXETG00000011534lsm393100.000Xenopus_tropicalis
ENSVPAG00000010709LSM310096.842ENSXCOG00000017432LSM39396.842Xiphophorus_couchianus
ENSVPAG00000010709LSM310096.842ENSXMAG00000009151lsm39396.842Xiphophorus_maculatus

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