EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVPAG00000011593 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Vicugna_pacos
Status: putative
Strand: Minus strand
Length: 4507 bases
Position: chrGeneScaffold_1280:64704-69210
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVPAP00000010791	LSM	PF01423.22	1.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVPAT00000011593	LSM1-201	228	-	ENSVPAP00000010791	76 (aa)	-	UPI00018BD200

Gene Model

Click here to download ENSVPAG00000011593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVPAG00000011593's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVPAG00000011593	LSM1	76	37.288	ENSVPAG00000001530	LSM8	61	37.288

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVPAG00000011593	LSM1	100	98.701	ENSG00000175324	LSM1	89	94.872	Homo_sapiens
ENSVPAG00000011593	LSM1	100	90.909	ENSAPOG00000010833	lsm1	58	90.909	Acanthochromis_polyacanthus
ENSVPAG00000011593	LSM1	100	98.701	ENSAMEG00000011141	LSM1	58	98.701	Ailuropoda_melanoleuca
ENSVPAG00000011593	LSM1	100	90.909	ENSACIG00000019593	lsm1	64	90.909	Amphilophus_citrinellus
ENSVPAG00000011593	LSM1	100	90.909	ENSAOCG00000017997	-	61	90.909	Amphiprion_ocellaris
ENSVPAG00000011593	LSM1	100	90.909	ENSAOCG00000017096	lsm1	58	90.909	Amphiprion_ocellaris
ENSVPAG00000011593	LSM1	100	90.909	ENSAPEG00000011669	lsm1	58	90.909	Amphiprion_percula
ENSVPAG00000011593	LSM1	100	90.909	ENSATEG00000022266	lsm1	58	90.909	Anabas_testudineus
ENSVPAG00000011593	LSM1	100	98.701	ENSANAG00000027785	LSM1	89	94.872	Aotus_nancymaae
ENSVPAG00000011593	LSM1	100	90.909	ENSACLG00000011400	lsm1	58	90.909	Astatotilapia_calliptera
ENSVPAG00000011593	LSM1	100	94.805	ENSAMXG00000005441	lsm1	58	94.805	Astyanax_mexicanus
ENSVPAG00000011593	LSM1	100	98.701	ENSBTAG00000001612	LSM1	58	98.701	Bos_taurus
ENSVPAG00000011593	LSM1	97	61.333	WBGene00003076	lsm-1	60	61.333	Caenorhabditis_elegans
ENSVPAG00000011593	LSM1	100	98.701	ENSCJAG00000048015	LSM1	89	94.872	Callithrix_jacchus
ENSVPAG00000011593	LSM1	100	98.701	ENSCAFG00000006113	LSM1	58	98.701	Canis_familiaris
ENSVPAG00000011593	LSM1	100	98.701	ENSCAFG00020001822	LSM1	58	98.701	Canis_lupus_dingo
ENSVPAG00000011593	LSM1	100	98.701	ENSCHIG00000013194	LSM1	58	98.701	Capra_hircus
ENSVPAG00000011593	LSM1	100	98.701	ENSTSYG00000010394	LSM1	89	94.872	Carlito_syrichta
ENSVPAG00000011593	LSM1	100	98.701	ENSCPOG00000032671	LSM1	58	98.701	Cavia_porcellus
ENSVPAG00000011593	LSM1	100	98.701	ENSCCAG00000037171	LSM1	89	94.872	Cebus_capucinus
ENSVPAG00000011593	LSM1	100	98.701	ENSCATG00000020377	LSM1	89	94.872	Cercocebus_atys
ENSVPAG00000011593	LSM1	100	98.701	ENSCLAG00000001137	LSM1	58	98.701	Chinchilla_lanigera
ENSVPAG00000011593	LSM1	100	98.701	ENSCSAG00000015485	LSM1	58	98.701	Chlorocebus_sabaeus
ENSVPAG00000011593	LSM1	100	98.701	ENSCHOG00000006030	LSM1	58	98.701	Choloepus_hoffmanni
ENSVPAG00000011593	LSM1	100	83.117	ENSCING00000013536	-	58	83.117	Ciona_intestinalis
ENSVPAG00000011593	LSM1	100	98.701	ENSCANG00000019173	LSM1	89	94.872	Colobus_angolensis_palliatus
ENSVPAG00000011593	LSM1	91	90.000	ENSCGRG00001002259	-	61	90.000	Cricetulus_griseus_chok1gshd
ENSVPAG00000011593	LSM1	100	98.701	ENSCGRG00001024560	-	58	98.701	Cricetulus_griseus_chok1gshd
ENSVPAG00000011593	LSM1	91	90.000	ENSCGRG00000013603	-	61	90.000	Cricetulus_griseus_crigri
ENSVPAG00000011593	LSM1	100	98.701	ENSCGRG00000006554	-	58	98.701	Cricetulus_griseus_crigri
ENSVPAG00000011593	LSM1	100	90.909	ENSCSEG00000010570	lsm1	53	90.909	Cynoglossus_semilaevis
ENSVPAG00000011593	LSM1	100	89.610	ENSCSEG00000008319	lsm1	53	89.610	Cynoglossus_semilaevis
ENSVPAG00000011593	LSM1	100	89.610	ENSCVAG00000003871	lsm1	58	89.610	Cyprinodon_variegatus
ENSVPAG00000011593	LSM1	100	94.805	ENSDARG00000043177	lsm1	58	94.805	Danio_rerio
ENSVPAG00000011593	LSM1	100	75.325	ENSDNOG00000046620	-	65	75.325	Dasypus_novemcinctus
ENSVPAG00000011593	LSM1	100	97.403	ENSDNOG00000032911	-	58	97.403	Dasypus_novemcinctus
ENSVPAG00000011593	LSM1	100	98.701	ENSDNOG00000046387	-	58	98.701	Dasypus_novemcinctus
ENSVPAG00000011593	LSM1	100	90.909	ENSDNOG00000030989	-	57	90.909	Dasypus_novemcinctus
ENSVPAG00000011593	LSM1	100	98.701	ENSDORG00000028172	Lsm1	58	98.701	Dipodomys_ordii
ENSVPAG00000011593	LSM1	100	74.026	FBgn0261067	LSm1	56	74.026	Drosophila_melanogaster
ENSVPAG00000011593	LSM1	100	98.701	ENSEASG00005016677	LSM1	58	98.701	Equus_asinus_asinus
ENSVPAG00000011593	LSM1	100	98.701	ENSECAG00000010461	LSM1	58	98.701	Equus_caballus
ENSVPAG00000011593	LSM1	100	98.701	ENSEEUG00000015181	LSM1	78	98.701	Erinaceus_europaeus
ENSVPAG00000011593	LSM1	100	94.805	ENSELUG00000023374	lsm1	58	94.805	Esox_lucius
ENSVPAG00000011593	LSM1	100	93.506	ENSELUG00000002322	lsm1	58	93.506	Esox_lucius
ENSVPAG00000011593	LSM1	100	98.701	ENSFCAG00000039335	LSM1	89	94.872	Felis_catus
ENSVPAG00000011593	LSM1	82	98.387	ENSFALG00000006723	LSM1	53	98.387	Ficedula_albicollis
ENSVPAG00000011593	LSM1	100	98.701	ENSFDAG00000007658	LSM1	58	98.701	Fukomys_damarensis
ENSVPAG00000011593	LSM1	100	89.610	ENSFHEG00000009556	lsm1	58	89.610	Fundulus_heteroclitus
ENSVPAG00000011593	LSM1	100	90.909	ENSGMOG00000016651	lsm1	57	90.909	Gadus_morhua
ENSVPAG00000011593	LSM1	100	97.403	ENSGALG00000003245	LSM1	58	97.403	Gallus_gallus
ENSVPAG00000011593	LSM1	100	89.610	ENSGAFG00000011355	lsm1	58	89.610	Gambusia_affinis
ENSVPAG00000011593	LSM1	100	90.909	ENSGACG00000011763	lsm1	57	90.909	Gasterosteus_aculeatus
ENSVPAG00000011593	LSM1	100	96.104	ENSGAGG00000024065	LSM1	58	96.104	Gopherus_agassizii
ENSVPAG00000011593	LSM1	100	98.701	ENSGGOG00000022658	LSM1	89	94.872	Gorilla_gorilla
ENSVPAG00000011593	LSM1	100	90.909	ENSHBUG00000010897	lsm1	58	90.909	Haplochromis_burtoni
ENSVPAG00000011593	LSM1	100	98.701	ENSHGLG00000005711	LSM1	58	98.701	Heterocephalus_glaber_female
ENSVPAG00000011593	LSM1	100	76.316	ENSHGLG00000017574	-	55	76.316	Heterocephalus_glaber_female
ENSVPAG00000011593	LSM1	100	98.701	ENSHGLG00100017660	LSM1	58	98.701	Heterocephalus_glaber_male
ENSVPAG00000011593	LSM1	100	76.316	ENSHGLG00100012152	-	55	76.316	Heterocephalus_glaber_male
ENSVPAG00000011593	LSM1	100	89.610	ENSHCOG00000017233	lsm1	58	89.610	Hippocampus_comes
ENSVPAG00000011593	LSM1	100	94.805	ENSIPUG00000002312	LSM1	58	94.805	Ictalurus_punctatus
ENSVPAG00000011593	LSM1	100	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSVPAG00000011593	LSM1	100	98.701	ENSJJAG00000014605	-	58	98.701	Jaculus_jaculus
ENSVPAG00000011593	LSM1	100	90.909	ENSKMAG00000003016	lsm1	58	90.909	Kryptolebias_marmoratus
ENSVPAG00000011593	LSM1	100	90.909	ENSLBEG00000022352	lsm1	58	90.909	Labrus_bergylta
ENSVPAG00000011593	LSM1	82	96.774	ENSLACG00000010947	LSM1	51	96.774	Latimeria_chalumnae
ENSVPAG00000011593	LSM1	100	96.104	ENSLOCG00000015149	lsm1	58	96.104	Lepisosteus_oculatus
ENSVPAG00000011593	LSM1	100	98.701	ENSLAFG00000003534	LSM1	58	98.701	Loxodonta_africana
ENSVPAG00000011593	LSM1	100	98.701	ENSMFAG00000032661	LSM1	89	94.872	Macaca_fascicularis
ENSVPAG00000011593	LSM1	100	98.701	ENSMLEG00000034535	LSM1	89	94.872	Mandrillus_leucophaeus
ENSVPAG00000011593	LSM1	100	90.909	ENSMAMG00000007464	lsm1	58	90.909	Mastacembelus_armatus
ENSVPAG00000011593	LSM1	100	90.909	ENSMZEG00005010321	lsm1	58	90.909	Maylandia_zebra
ENSVPAG00000011593	LSM1	100	97.403	ENSMGAG00000002125	LSM1	58	97.403	Meleagris_gallopavo
ENSVPAG00000011593	LSM1	100	98.701	ENSMICG00000030726	LSM1	89	94.872	Microcebus_murinus
ENSVPAG00000011593	LSM1	100	98.701	ENSMOCG00000022817	Lsm1	58	98.701	Microtus_ochrogaster
ENSVPAG00000011593	LSM1	100	90.909	ENSMMOG00000015466	lsm1	58	90.909	Mola_mola
ENSVPAG00000011593	LSM1	100	97.403	ENSMODG00000010732	-	58	97.403	Monodelphis_domestica
ENSVPAG00000011593	LSM1	100	90.909	ENSMALG00000001478	lsm1	82	90.909	Monopterus_albus
ENSVPAG00000011593	LSM1	100	98.701	MGP_CAROLIEiJ_G0030930	Lsm1	58	98.701	Mus_caroli
ENSVPAG00000011593	LSM1	100	98.701	ENSMUSG00000037296	Lsm1	91	94.872	Mus_musculus
ENSVPAG00000011593	LSM1	100	98.701	MGP_PahariEiJ_G0021400	Lsm1	58	98.701	Mus_pahari
ENSVPAG00000011593	LSM1	100	98.701	MGP_SPRETEiJ_G0032049	Lsm1	58	98.701	Mus_spretus
ENSVPAG00000011593	LSM1	100	98.701	ENSMPUG00000009883	LSM1	58	98.701	Mustela_putorius_furo
ENSVPAG00000011593	LSM1	100	98.701	ENSMLUG00000003734	LSM1	58	98.701	Myotis_lucifugus
ENSVPAG00000011593	LSM1	100	97.403	ENSNGAG00000003753	Lsm1	58	97.403	Nannospalax_galili
ENSVPAG00000011593	LSM1	100	90.909	ENSNBRG00000017370	lsm1	66	90.909	Neolamprologus_brichardi
ENSVPAG00000011593	LSM1	100	98.701	ENSNLEG00000029390	LSM1	89	94.872	Nomascus_leucogenys
ENSVPAG00000011593	LSM1	100	97.403	ENSMEUG00000014077	LSM1	58	97.403	Notamacropus_eugenii
ENSVPAG00000011593	LSM1	80	100.000	ENSOPRG00000000333	LSM1	52	100.000	Ochotona_princeps
ENSVPAG00000011593	LSM1	100	98.701	ENSODEG00000004834	LSM1	58	98.701	Octodon_degus
ENSVPAG00000011593	LSM1	100	90.909	ENSONIG00000010782	lsm1	58	90.909	Oreochromis_niloticus
ENSVPAG00000011593	LSM1	100	97.403	ENSOANG00000003256	LSM1	58	97.403	Ornithorhynchus_anatinus
ENSVPAG00000011593	LSM1	100	98.701	ENSOCUG00000015399	LSM1	58	98.701	Oryctolagus_cuniculus
ENSVPAG00000011593	LSM1	100	90.909	ENSORLG00000030288	lsm1	58	90.909	Oryzias_latipes
ENSVPAG00000011593	LSM1	100	90.909	ENSORLG00020003941	lsm1	58	90.909	Oryzias_latipes_hni
ENSVPAG00000011593	LSM1	100	90.909	ENSORLG00020006213	-	50	90.909	Oryzias_latipes_hni
ENSVPAG00000011593	LSM1	100	90.909	ENSORLG00015018350	lsm1	58	90.909	Oryzias_latipes_hsok
ENSVPAG00000011593	LSM1	100	90.909	ENSOMEG00000012454	lsm1	58	90.909	Oryzias_melastigma
ENSVPAG00000011593	LSM1	100	98.701	ENSOGAG00000015161	LSM1	58	98.701	Otolemur_garnettii
ENSVPAG00000011593	LSM1	100	98.701	ENSOARG00000001317	LSM1	58	98.701	Ovis_aries
ENSVPAG00000011593	LSM1	100	98.701	ENSPPAG00000032279	LSM1	89	94.872	Pan_paniscus
ENSVPAG00000011593	LSM1	100	98.701	ENSPPRG00000014172	-	89	94.872	Panthera_pardus
ENSVPAG00000011593	LSM1	100	98.701	ENSPTIG00000010289	LSM1	89	94.872	Panthera_tigris_altaica
ENSVPAG00000011593	LSM1	100	98.701	ENSPTRG00000020169	LSM1	89	94.872	Pan_troglodytes
ENSVPAG00000011593	LSM1	100	98.701	ENSPANG00000008814	LSM1	89	94.872	Papio_anubis
ENSVPAG00000011593	LSM1	100	97.403	ENSPKIG00000001839	lsm1	58	97.403	Paramormyrops_kingsleyae
ENSVPAG00000011593	LSM1	100	92.208	ENSPKIG00000019409	LSM1	57	92.208	Paramormyrops_kingsleyae
ENSVPAG00000011593	LSM1	96	87.671	ENSPSIG00000012563	LSM1	56	87.671	Pelodiscus_sinensis
ENSVPAG00000011593	LSM1	100	90.909	ENSPMGG00000022999	lsm1	73	90.909	Periophthalmus_magnuspinnatus
ENSVPAG00000011593	LSM1	75	96.491	ENSPMAG00000002671	lsm1	50	96.491	Petromyzon_marinus
ENSVPAG00000011593	LSM1	100	97.403	ENSPCIG00000008880	LSM1	58	97.403	Phascolarctos_cinereus
ENSVPAG00000011593	LSM1	100	89.610	ENSPFOG00000016029	lsm1	58	89.610	Poecilia_formosa
ENSVPAG00000011593	LSM1	100	89.610	ENSPLAG00000007879	lsm1	58	89.610	Poecilia_latipinna
ENSVPAG00000011593	LSM1	100	89.610	ENSPMEG00000023550	lsm1	58	89.610	Poecilia_mexicana
ENSVPAG00000011593	LSM1	100	89.610	ENSPREG00000009574	lsm1	58	89.610	Poecilia_reticulata
ENSVPAG00000011593	LSM1	100	98.701	ENSPPYG00000018521	LSM1	58	98.701	Pongo_abelii
ENSVPAG00000011593	LSM1	100	98.701	ENSPCOG00000020901	-	89	94.872	Propithecus_coquereli
ENSVPAG00000011593	LSM1	100	98.701	ENSPVAG00000006016	LSM1	58	98.701	Pteropus_vampyrus
ENSVPAG00000011593	LSM1	100	90.909	ENSPNYG00000018067	lsm1	58	90.909	Pundamilia_nyererei
ENSVPAG00000011593	LSM1	100	94.805	ENSPNAG00000013707	lsm1	58	94.805	Pygocentrus_nattereri
ENSVPAG00000011593	LSM1	100	97.403	ENSRNOG00000015375	Lsm1	58	97.403	Rattus_norvegicus
ENSVPAG00000011593	LSM1	100	98.701	ENSRBIG00000027449	LSM1	89	94.872	Rhinopithecus_bieti
ENSVPAG00000011593	LSM1	100	98.701	ENSRROG00000036074	LSM1	89	94.872	Rhinopithecus_roxellana
ENSVPAG00000011593	LSM1	100	97.403	ENSSHAG00000017260	LSM1	58	97.403	Sarcophilus_harrisii
ENSVPAG00000011593	LSM1	100	97.403	ENSSFOG00015019528	lsm1	58	97.403	Scleropages_formosus
ENSVPAG00000011593	LSM1	100	90.909	ENSSMAG00000004930	lsm1	58	90.909	Scophthalmus_maximus
ENSVPAG00000011593	LSM1	100	90.909	ENSSDUG00000021823	lsm1	58	90.909	Seriola_dumerili
ENSVPAG00000011593	LSM1	100	90.909	ENSSLDG00000012154	lsm1	58	90.909	Seriola_lalandi_dorsalis
ENSVPAG00000011593	LSM1	100	96.104	ENSSPUG00000014878	LSM1	58	96.104	Sphenodon_punctatus
ENSVPAG00000011593	LSM1	100	90.909	ENSSPAG00000020548	lsm1	58	90.909	Stegastes_partitus
ENSVPAG00000011593	LSM1	100	98.701	ENSSSCG00000039058	LSM1	58	98.701	Sus_scrofa
ENSVPAG00000011593	LSM1	100	96.104	ENSTGUG00000004793	LSM1	58	96.104	Taeniopygia_guttata
ENSVPAG00000011593	LSM1	100	90.909	ENSTRUG00000025239	lsm1	58	90.909	Takifugu_rubripes
ENSVPAG00000011593	LSM1	100	90.909	ENSTNIG00000004055	lsm1	58	90.909	Tetraodon_nigroviridis
ENSVPAG00000011593	LSM1	80	98.361	ENSTBEG00000015884	LSM1	52	98.361	Tupaia_belangeri
ENSVPAG00000011593	LSM1	100	98.701	ENSTTRG00000004482	LSM1	58	98.701	Tursiops_truncatus
ENSVPAG00000011593	LSM1	100	98.701	ENSUAMG00000004103	LSM1	58	98.701	Ursus_americanus
ENSVPAG00000011593	LSM1	100	98.701	ENSUMAG00000009132	LSM1	58	98.701	Ursus_maritimus
ENSVPAG00000011593	LSM1	100	98.701	ENSVVUG00000020191	LSM1	58	98.701	Vulpes_vulpes
ENSVPAG00000011593	LSM1	100	71.429	ENSVVUG00000014880	-	82	71.429	Vulpes_vulpes
ENSVPAG00000011593	LSM1	100	92.593	ENSXETG00000009004	lsm1	59	92.593	Xenopus_tropicalis
ENSVPAG00000011593	LSM1	100	89.610	ENSXCOG00000015631	lsm1	58	89.610	Xiphophorus_couchianus
ENSVPAG00000011593	LSM1	100	89.610	ENSXMAG00000026637	lsm1	58	89.610	Xiphophorus_maculatus