EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000001245 (Gene tree)
Gene ID: -
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 71699 bases
Position: chrNBDQ01000017.1:5792907-5864605
Accession: 112916665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000001550	RNA_pol_Rpb1_5	PF04998.17	2.2e-103	1	1
ENSVVUP00000001532	RNA_pol_Rpb1_5	PF04998.17	2.3e-103	1	1
ENSVVUP00000001550	RNA_pol_Rpb1_4	PF05000.17	3e-25	1	1
ENSVVUP00000001532	RNA_pol_Rpb1_4	PF05000.17	3.2e-25	1	1
ENSVVUP00000001550	RNA_pol_Rpb1_2	PF00623.20	7.3e-70	1	1
ENSVVUP00000001532	RNA_pol_Rpb1_2	PF00623.20	7.7e-70	1	1
ENSVVUP00000001532	RNA_pol_Rpb1_3	PF04983.18	1.5e-36	1	1
ENSVVUP00000001550	RNA_pol_Rpb1_3	PF04983.18	2e-28	1	2
ENSVVUP00000001550	RNA_pol_Rpb1_3	PF04983.18	2e-28	2	2
ENSVVUP00000001550	RNA_pol_Rpb1_1	PF04997.12	9.5e-22	1	1
ENSVVUP00000001532	RNA_pol_Rpb1_1	PF04997.12	1.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000002236	POLR1A-201	5980	-	ENSVVUP00000001532	1717 (aa)	XP_025850188	UPI000DF687C0
ENSVVUT00000002264	POLR1A-202	5830	-	ENSVVUP00000001550	1667 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000001245's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000001245's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000001245	POLR1A	62	31.828	ENSVVUG00000025523	POLR3A	70	32.796
ENSVVUG00000001245	POLR1A	64	37.143	ENSVVUG00000027878	-	56	37.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000001245	POLR1A	100	90.413	ENSG00000068654	POLR1A	100	90.482	Homo_sapiens
ENSVVUG00000001245	POLR1A	69	67.875	ENSAPOG00000017945	polr1a	99	67.875	Acanthochromis_polyacanthus
ENSVVUG00000001245	POLR1A	100	95.693	ENSAMEG00000005807	POLR1A	100	95.902	Ailuropoda_melanoleuca
ENSVVUG00000001245	POLR1A	100	62.929	ENSACIG00000022147	polr1a	100	62.326	Amphilophus_citrinellus
ENSVVUG00000001245	POLR1A	100	66.164	ENSAOCG00000017336	polr1a	100	68.313	Amphiprion_ocellaris
ENSVVUG00000001245	POLR1A	95	73.611	ENSAPEG00000016105	polr1a	98	73.611	Amphiprion_percula
ENSVVUG00000001245	POLR1A	100	66.898	ENSATEG00000016773	polr1a	100	66.474	Anabas_testudineus
ENSVVUG00000001245	POLR1A	86	72.955	ENSAPLG00000013871	POLR1A	99	72.931	Anas_platyrhynchos
ENSVVUG00000001245	POLR1A	99	69.809	ENSACAG00000012141	POLR1A	99	69.422	Anolis_carolinensis
ENSVVUG00000001245	POLR1A	100	89.535	ENSANAG00000033927	POLR1A	100	89.942	Aotus_nancymaae
ENSVVUG00000001245	POLR1A	100	62.703	ENSACLG00000020541	polr1a	100	62.529	Astatotilapia_calliptera
ENSVVUG00000001245	POLR1A	100	90.745	ENSBTAG00000006481	POLR1A	100	90.745	Bos_taurus
ENSVVUG00000001245	POLR1A	97	40.027	WBGene00012999	rpoa-1	98	37.732	Caenorhabditis_elegans
ENSVVUG00000001245	POLR1A	100	89.309	ENSCJAG00000019547	POLR1A	100	89.483	Callithrix_jacchus
ENSVVUG00000001245	POLR1A	100	99.418	ENSCAFG00000007613	POLR1A	100	99.418	Canis_familiaris
ENSVVUG00000001245	POLR1A	100	99.071	ENSCAFG00020014752	POLR1A	100	99.071	Canis_lupus_dingo
ENSVVUG00000001245	POLR1A	100	89.211	ENSCHIG00000018204	POLR1A	99	90.026	Capra_hircus
ENSVVUG00000001245	POLR1A	100	89.012	ENSTSYG00000002761	POLR1A	100	89.012	Carlito_syrichta
ENSVVUG00000001245	POLR1A	97	84.886	ENSCAPG00000010132	POLR1A	100	84.740	Cavia_aperea
ENSVVUG00000001245	POLR1A	100	89.354	ENSCPOG00000012350	POLR1A	100	89.354	Cavia_porcellus
ENSVVUG00000001245	POLR1A	100	89.657	ENSCCAG00000019839	POLR1A	100	89.553	Cebus_capucinus
ENSVVUG00000001245	POLR1A	100	90.819	ENSCATG00000029786	POLR1A	100	90.888	Cercocebus_atys
ENSVVUG00000001245	POLR1A	100	89.205	ENSCLAG00000005187	POLR1A	100	89.031	Chinchilla_lanigera
ENSVVUG00000001245	POLR1A	100	90.703	ENSCSAG00000016251	POLR1A	100	90.714	Chlorocebus_sabaeus
ENSVVUG00000001245	POLR1A	99	75.611	ENSCPBG00000001115	POLR1A	99	75.087	Chrysemys_picta_bellii
ENSVVUG00000001245	POLR1A	91	54.963	ENSCSAVG00000007184	-	97	50.000	Ciona_savignyi
ENSVVUG00000001245	POLR1A	100	87.863	ENSCANG00000031785	POLR1A	100	87.413	Colobus_angolensis_palliatus
ENSVVUG00000001245	POLR1A	100	85.170	ENSCGRG00001006651	Polr1a	100	85.170	Cricetulus_griseus_chok1gshd
ENSVVUG00000001245	POLR1A	60	86.906	ENSCGRG00000010834	Polr1a	100	86.906	Cricetulus_griseus_crigri
ENSVVUG00000001245	POLR1A	100	62.289	ENSCSEG00000020190	polr1a	100	62.406	Cynoglossus_semilaevis
ENSVVUG00000001245	POLR1A	100	63.886	ENSCVAG00000020941	polr1a	100	63.945	Cyprinodon_variegatus
ENSVVUG00000001245	POLR1A	100	67.286	ENSDARG00000098375	polr1a	100	65.975	Danio_rerio
ENSVVUG00000001245	POLR1A	100	82.995	ENSDNOG00000010829	POLR1A	100	82.995	Dasypus_novemcinctus
ENSVVUG00000001245	POLR1A	100	88.348	ENSDORG00000008298	Polr1a	100	88.348	Dipodomys_ordii
ENSVVUG00000001245	POLR1A	80	44.516	FBgn0019938	RpI1	99	43.190	Drosophila_melanogaster
ENSVVUG00000001245	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSVVUG00000001245	POLR1A	88	67.442	ENSEBUG00000005667	-	93	67.442	Eptatretus_burgeri
ENSVVUG00000001245	POLR1A	100	93.140	ENSEASG00005001625	POLR1A	100	93.314	Equus_asinus_asinus
ENSVVUG00000001245	POLR1A	100	93.140	ENSECAG00000030510	-	100	95.218	Equus_caballus
ENSVVUG00000001245	POLR1A	100	93.140	ENSECAG00000010092	POLR1A	100	95.218	Equus_caballus
ENSVVUG00000001245	POLR1A	100	93.140	ENSECAG00000036306	-	100	95.218	Equus_caballus
ENSVVUG00000001245	POLR1A	85	95.745	ENSEEUG00000000676	POLR1A	85	95.556	Erinaceus_europaeus
ENSVVUG00000001245	POLR1A	100	67.150	ENSELUG00000012769	polr1a	99	66.073	Esox_lucius
ENSVVUG00000001245	POLR1A	100	94.820	ENSFCAG00000008966	POLR1A	100	94.820	Felis_catus
ENSVVUG00000001245	POLR1A	99	71.739	ENSFALG00000010082	POLR1A	99	71.739	Ficedula_albicollis
ENSVVUG00000001245	POLR1A	100	89.186	ENSFDAG00000013726	POLR1A	100	89.128	Fukomys_damarensis
ENSVVUG00000001245	POLR1A	100	61.739	ENSFHEG00000005996	polr1a	100	61.880	Fundulus_heteroclitus
ENSVVUG00000001245	POLR1A	100	60.221	ENSGMOG00000002230	polr1a	100	60.280	Gadus_morhua
ENSVVUG00000001245	POLR1A	90	70.169	ENSGALG00000038160	-	99	70.298	Gallus_gallus
ENSVVUG00000001245	POLR1A	100	64.713	ENSGAFG00000015266	polr1a	100	64.092	Gambusia_affinis
ENSVVUG00000001245	POLR1A	100	64.845	ENSGACG00000018791	polr1a	100	64.601	Gasterosteus_aculeatus
ENSVVUG00000001245	POLR1A	89	76.623	ENSGAGG00000004984	-	95	82.061	Gopherus_agassizii
ENSVVUG00000001245	POLR1A	100	90.471	ENSGGOG00000001788	POLR1A	100	90.540	Gorilla_gorilla
ENSVVUG00000001245	POLR1A	90	64.706	ENSHBUG00000020021	polr1a	98	65.267	Haplochromis_burtoni
ENSVVUG00000001245	POLR1A	100	89.761	ENSHGLG00000006334	POLR1A	100	89.761	Heterocephalus_glaber_female
ENSVVUG00000001245	POLR1A	100	89.501	ENSHGLG00100006614	POLR1A	100	89.501	Heterocephalus_glaber_male
ENSVVUG00000001245	POLR1A	100	62.133	ENSHCOG00000003345	polr1a	100	61.658	Hippocampus_comes
ENSVVUG00000001245	POLR1A	100	65.991	ENSIPUG00000013174	polr1a	100	65.373	Ictalurus_punctatus
ENSVVUG00000001245	POLR1A	100	86.736	ENSSTOG00000012580	POLR1A	100	87.093	Ictidomys_tridecemlineatus
ENSVVUG00000001245	POLR1A	100	87.979	ENSJJAG00000013113	Polr1a	100	87.979	Jaculus_jaculus
ENSVVUG00000001245	POLR1A	100	65.620	ENSKMAG00000007399	polr1a	100	65.409	Kryptolebias_marmoratus
ENSVVUG00000001245	POLR1A	95	68.772	ENSLBEG00000015401	polr1a	99	67.782	Labrus_bergylta
ENSVVUG00000001245	POLR1A	53	76.496	ENSLACG00000003218	polr1a	100	76.496	Latimeria_chalumnae
ENSVVUG00000001245	POLR1A	100	70.990	ENSLOCG00000010881	polr1a	100	70.759	Lepisosteus_oculatus
ENSVVUG00000001245	POLR1A	100	89.791	ENSLAFG00000014948	POLR1A	100	89.797	Loxodonta_africana
ENSVVUG00000001245	POLR1A	100	90.703	ENSMFAG00000046097	POLR1A	100	90.830	Macaca_fascicularis
ENSVVUG00000001245	POLR1A	100	90.587	ENSMMUG00000015815	POLR1A	100	90.714	Macaca_mulatta
ENSVVUG00000001245	POLR1A	100	90.703	ENSMNEG00000043313	POLR1A	100	90.830	Macaca_nemestrina
ENSVVUG00000001245	POLR1A	100	90.122	ENSMLEG00000042428	POLR1A	100	90.250	Mandrillus_leucophaeus
ENSVVUG00000001245	POLR1A	100	66.512	ENSMAMG00000016565	polr1a	100	65.641	Mastacembelus_armatus
ENSVVUG00000001245	POLR1A	100	66.067	ENSMZEG00005004915	polr1a	100	65.951	Maylandia_zebra
ENSVVUG00000001245	POLR1A	99	69.146	ENSMGAG00000013111	POLR1A	99	69.262	Meleagris_gallopavo
ENSVVUG00000001245	POLR1A	92	87.342	ENSMAUG00000008497	Polr1a	100	87.152	Mesocricetus_auratus
ENSVVUG00000001245	POLR1A	100	91.342	ENSMICG00000000757	POLR1A	100	91.342	Microcebus_murinus
ENSVVUG00000001245	POLR1A	100	87.703	ENSMOCG00000000122	Polr1a	100	87.529	Microtus_ochrogaster
ENSVVUG00000001245	POLR1A	100	65.000	ENSMMOG00000010216	polr1a	100	65.233	Mola_mola
ENSVVUG00000001245	POLR1A	100	74.856	ENSMODG00000009335	POLR1A	100	74.684	Monodelphis_domestica
ENSVVUG00000001245	POLR1A	100	66.048	ENSMALG00000013363	polr1a	100	65.762	Monopterus_albus
ENSVVUG00000001245	POLR1A	100	85.905	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.673	Mus_caroli
ENSVVUG00000001245	POLR1A	100	85.905	ENSMUSG00000049553	Polr1a	100	85.731	Mus_musculus
ENSVVUG00000001245	POLR1A	100	86.783	MGP_PahariEiJ_G0022230	Polr1a	100	86.609	Mus_pahari
ENSVVUG00000001245	POLR1A	100	84.729	MGP_SPRETEiJ_G0029499	Polr1a	100	84.914	Mus_spretus
ENSVVUG00000001245	POLR1A	100	95.343	ENSMPUG00000009135	POLR1A	100	95.343	Mustela_putorius_furo
ENSVVUG00000001245	POLR1A	100	90.446	ENSMLUG00000015723	POLR1A	100	90.446	Myotis_lucifugus
ENSVVUG00000001245	POLR1A	100	87.942	ENSNGAG00000017907	Polr1a	100	87.768	Nannospalax_galili
ENSVVUG00000001245	POLR1A	100	66.125	ENSNBRG00000000519	polr1a	100	66.125	Neolamprologus_brichardi
ENSVVUG00000001245	POLR1A	100	88.548	ENSNLEG00000002264	POLR1A	100	88.446	Nomascus_leucogenys
ENSVVUG00000001245	POLR1A	75	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSVVUG00000001245	POLR1A	99	82.921	ENSOPRG00000008269	POLR1A	100	82.332	Ochotona_princeps
ENSVVUG00000001245	POLR1A	100	88.902	ENSODEG00000003542	POLR1A	100	89.192	Octodon_degus
ENSVVUG00000001245	POLR1A	100	66.647	ENSONIG00000015895	polr1a	100	66.647	Oreochromis_niloticus
ENSVVUG00000001245	POLR1A	100	90.058	ENSOCUG00000010138	POLR1A	100	90.000	Oryctolagus_cuniculus
ENSVVUG00000001245	POLR1A	100	64.849	ENSORLG00000008753	polr1a	99	64.791	Oryzias_latipes
ENSVVUG00000001245	POLR1A	100	63.631	ENSORLG00020020726	polr1a	99	63.457	Oryzias_latipes_hni
ENSVVUG00000001245	POLR1A	95	75.532	ENSORLG00015016071	polr1a	98	75.556	Oryzias_latipes_hsok
ENSVVUG00000001245	POLR1A	100	90.058	ENSOGAG00000004031	POLR1A	100	90.058	Otolemur_garnettii
ENSVVUG00000001245	POLR1A	100	90.534	ENSOARG00000020601	POLR1A	100	90.534	Ovis_aries
ENSVVUG00000001245	POLR1A	100	90.354	ENSPPAG00000042450	POLR1A	100	90.424	Pan_paniscus
ENSVVUG00000001245	POLR1A	100	94.994	ENSPPRG00000006702	POLR1A	100	94.994	Panthera_pardus
ENSVVUG00000001245	POLR1A	100	94.432	ENSPTIG00000018783	POLR1A	100	94.432	Panthera_tigris_altaica
ENSVVUG00000001245	POLR1A	100	89.901	ENSPTRG00000012147	POLR1A	100	90.482	Pan_troglodytes
ENSVVUG00000001245	POLR1A	100	90.819	ENSPANG00000025908	POLR1A	100	90.888	Papio_anubis
ENSVVUG00000001245	POLR1A	94	76.389	ENSPKIG00000005468	polr1a	99	76.389	Paramormyrops_kingsleyae
ENSVVUG00000001245	POLR1A	63	72.535	ENSPSIG00000009321	-	99	72.442	Pelodiscus_sinensis
ENSVVUG00000001245	POLR1A	54	68.021	ENSPMGG00000009718	polr1a	95	68.021	Periophthalmus_magnuspinnatus
ENSVVUG00000001245	POLR1A	100	87.877	ENSPEMG00000022224	Polr1a	100	87.877	Peromyscus_maniculatus_bairdii
ENSVVUG00000001245	POLR1A	95	79.380	ENSPCIG00000004222	POLR1A	99	79.367	Phascolarctos_cinereus
ENSVVUG00000001245	POLR1A	100	64.713	ENSPFOG00000005025	polr1a	100	64.539	Poecilia_formosa
ENSVVUG00000001245	POLR1A	100	64.904	ENSPLAG00000021389	polr1a	100	64.076	Poecilia_latipinna
ENSVVUG00000001245	POLR1A	100	63.146	ENSPMEG00000006463	polr1a	100	63.167	Poecilia_mexicana
ENSVVUG00000001245	POLR1A	100	65.139	ENSPREG00000002389	polr1a	100	64.142	Poecilia_reticulata
ENSVVUG00000001245	POLR1A	100	89.773	ENSPPYG00000012217	POLR1A	100	89.831	Pongo_abelii
ENSVVUG00000001245	POLR1A	93	100.000	ENSPCAG00000011582	POLR1A	92	100.000	Procavia_capensis
ENSVVUG00000001245	POLR1A	100	90.877	ENSPCOG00000026987	POLR1A	100	90.936	Propithecus_coquereli
ENSVVUG00000001245	POLR1A	95	91.912	ENSPVAG00000012674	POLR1A	95	91.519	Pteropus_vampyrus
ENSVVUG00000001245	POLR1A	100	66.067	ENSPNYG00000000026	polr1a	100	65.951	Pundamilia_nyererei
ENSVVUG00000001245	POLR1A	100	66.957	ENSPNAG00000019223	polr1a	99	68.511	Pygocentrus_nattereri
ENSVVUG00000001245	POLR1A	100	87.645	ENSRNOG00000009545	Polr1a	100	87.471	Rattus_norvegicus
ENSVVUG00000001245	POLR1A	100	90.064	ENSRBIG00000028335	POLR1A	100	90.250	Rhinopithecus_bieti
ENSVVUG00000001245	POLR1A	100	90.006	ENSRROG00000031473	POLR1A	100	90.192	Rhinopithecus_roxellana
ENSVVUG00000001245	POLR1A	99	37.050	YOR341W	RPA190	99	36.655	Saccharomyces_cerevisiae
ENSVVUG00000001245	POLR1A	100	89.070	ENSSBOG00000030262	POLR1A	100	89.244	Saimiri_boliviensis_boliviensis
ENSVVUG00000001245	POLR1A	100	73.368	ENSSHAG00000014739	POLR1A	100	73.599	Sarcophilus_harrisii
ENSVVUG00000001245	POLR1A	100	67.596	ENSSFOG00015019716	polr1a	100	67.712	Scleropages_formosus
ENSVVUG00000001245	POLR1A	100	66.125	ENSSMAG00000014342	polr1a	100	66.125	Scophthalmus_maximus
ENSVVUG00000001245	POLR1A	100	67.149	ENSSDUG00000014631	polr1a	100	67.092	Seriola_dumerili
ENSVVUG00000001245	POLR1A	100	65.487	ENSSLDG00000024095	polr1a	100	65.429	Seriola_lalandi_dorsalis
ENSVVUG00000001245	POLR1A	75	97.872	ENSSARG00000003136	-	76	97.872	Sorex_araneus
ENSVVUG00000001245	POLR1A	94	78.974	ENSSPUG00000004215	POLR1A	98	78.974	Sphenodon_punctatus
ENSVVUG00000001245	POLR1A	63	72.336	ENSSPAG00000016341	polr1a	94	72.336	Stegastes_partitus
ENSVVUG00000001245	POLR1A	83	92.432	ENSSSCG00000008226	POLR1A	99	92.410	Sus_scrofa
ENSVVUG00000001245	POLR1A	99	70.377	ENSTGUG00000010704	POLR1A	100	70.377	Taeniopygia_guttata
ENSVVUG00000001245	POLR1A	100	64.501	ENSTRUG00000002210	polr1a	97	65.546	Takifugu_rubripes
ENSVVUG00000001245	POLR1A	100	59.988	ENSTNIG00000010116	polr1a	100	59.931	Tetraodon_nigroviridis
ENSVVUG00000001245	POLR1A	76	96.460	ENSTBEG00000008646	POLR1A	74	96.460	Tupaia_belangeri
ENSVVUG00000001245	POLR1A	100	87.369	ENSTTRG00000008597	POLR1A	100	87.776	Tursiops_truncatus
ENSVVUG00000001245	POLR1A	69	96.698	ENSUAMG00000012158	-	94	96.698	Ursus_americanus
ENSVVUG00000001245	POLR1A	100	95.518	ENSUMAG00000006700	POLR1A	100	95.518	Ursus_maritimus
ENSVVUG00000001245	POLR1A	100	68.129	ENSXETG00000001952	polr1a	100	69.602	Xenopus_tropicalis
ENSVVUG00000001245	POLR1A	100	65.139	ENSXMAG00000004032	polr1a	100	64.624	Xiphophorus_maculatus