EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVVUG00000005887 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 26326 bases
Position: chrNBDQ01000024.1:18980196-19006521
Accession: 112918944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000007782	EST1	PF10374.9	1.5e-23	1	1
ENSVVUP00000007782	EST1_DNA_bind	PF10373.9	2.4e-40	1	2
ENSVVUP00000007782	EST1_DNA_bind	PF10373.9	2.4e-40	2	2
ENSVVUP00000007782	PIN_4	PF13638.6	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000010273	SMG5-201	4232	XM_025997301	ENSVVUP00000007782	1011 (aa)	XP_025853086	UPI000DF6F9FE

Gene Model

Click here to download ENSVVUG00000005887's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000005887's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000005887	SMG5	100	93.898	ENSG00000198952	SMG5	100	94.390	Homo_sapiens
ENSVVUG00000005887	SMG5	99	67.031	ENSAPOG00000019690	smg5	99	67.063	Acanthochromis_polyacanthus
ENSVVUG00000005887	SMG5	98	95.267	ENSAMEG00000014458	SMG5	100	95.267	Ailuropoda_melanoleuca
ENSVVUG00000005887	SMG5	99	64.603	ENSACIG00000001353	smg5	99	65.541	Amphilophus_citrinellus
ENSVVUG00000005887	SMG5	98	64.484	ENSAOCG00000019483	smg5	96	65.075	Amphiprion_ocellaris
ENSVVUG00000005887	SMG5	98	66.032	ENSAPEG00000022949	smg5	98	66.232	Amphiprion_percula
ENSVVUG00000005887	SMG5	99	65.924	ENSATEG00000005348	smg5	99	66.569	Anabas_testudineus
ENSVVUG00000005887	SMG5	98	77.854	ENSAPLG00000010263	SMG5	100	77.854	Anas_platyrhynchos
ENSVVUG00000005887	SMG5	100	93.504	ENSANAG00000032899	SMG5	100	94.193	Aotus_nancymaae
ENSVVUG00000005887	SMG5	99	64.981	ENSACLG00000009311	smg5	99	65.634	Astatotilapia_calliptera
ENSVVUG00000005887	SMG5	99	43.738	ENSBTAG00000021747	-	99	43.834	Bos_taurus
ENSVVUG00000005887	SMG5	100	93.110	ENSBTAG00000009435	SMG5	100	94.094	Bos_taurus
ENSVVUG00000005887	SMG5	100	93.701	ENSCJAG00000005684	SMG5	100	94.390	Callithrix_jacchus
ENSVVUG00000005887	SMG5	100	99.604	ENSCAFG00000016839	SMG5	100	99.604	Canis_familiaris
ENSVVUG00000005887	SMG5	100	99.604	ENSCAFG00020006061	SMG5	100	99.604	Canis_lupus_dingo
ENSVVUG00000005887	SMG5	100	93.701	ENSCHIG00000007709	SMG5	100	93.701	Capra_hircus
ENSVVUG00000005887	SMG5	99	44.138	ENSCHIG00000006323	-	99	44.138	Capra_hircus
ENSVVUG00000005887	SMG5	100	94.494	ENSTSYG00000004099	SMG5	100	94.494	Carlito_syrichta
ENSVVUG00000005887	SMG5	97	71.400	ENSCAPG00000003631	SMG5	100	72.500	Cavia_aperea
ENSVVUG00000005887	SMG5	100	92.436	ENSCPOG00000015696	SMG5	100	92.534	Cavia_porcellus
ENSVVUG00000005887	SMG5	100	93.602	ENSCCAG00000027409	SMG5	100	94.291	Cebus_capucinus
ENSVVUG00000005887	SMG5	100	93.799	ENSCATG00000030539	SMG5	100	94.390	Cercocebus_atys
ENSVVUG00000005887	SMG5	100	93.124	ENSCLAG00000003983	SMG5	100	93.615	Chinchilla_lanigera
ENSVVUG00000005887	SMG5	100	93.701	ENSCSAG00000002120	SMG5	100	94.291	Chlorocebus_sabaeus
ENSVVUG00000005887	SMG5	55	88.686	ENSCHOG00000008741	-	57	88.686	Choloepus_hoffmanni
ENSVVUG00000005887	SMG5	93	77.204	ENSCPBG00000025848	SMG5	100	77.282	Chrysemys_picta_bellii
ENSVVUG00000005887	SMG5	93	34.706	ENSCING00000008706	-	99	34.675	Ciona_intestinalis
ENSVVUG00000005887	SMG5	100	89.862	ENSCANG00000029208	SMG5	100	90.650	Colobus_angolensis_palliatus
ENSVVUG00000005887	SMG5	100	90.757	ENSCGRG00001006336	Smg5	100	90.864	Cricetulus_griseus_chok1gshd
ENSVVUG00000005887	SMG5	98	90.634	ENSCGRG00000005111	Smg5	100	90.735	Cricetulus_griseus_crigri
ENSVVUG00000005887	SMG5	99	64.475	ENSCSEG00000014220	smg5	99	65.123	Cynoglossus_semilaevis
ENSVVUG00000005887	SMG5	99	60.648	ENSCVAG00000000529	smg5	99	60.413	Cyprinodon_variegatus
ENSVVUG00000005887	SMG5	52	59.601	ENSDARG00000041481	smg5	99	62.715	Danio_rerio
ENSVVUG00000005887	SMG5	92	36.315	ENSDNOG00000039862	-	100	35.357	Dasypus_novemcinctus
ENSVVUG00000005887	SMG5	100	89.665	ENSDNOG00000000051	SMG5	100	90.275	Dasypus_novemcinctus
ENSVVUG00000005887	SMG5	100	91.266	ENSDORG00000010382	Smg5	100	92.043	Dipodomys_ordii
ENSVVUG00000005887	SMG5	68	35.256	FBgn0019890	Smg5	62	35.256	Drosophila_melanogaster
ENSVVUG00000005887	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSVVUG00000005887	SMG5	90	47.021	ENSEBUG00000003739	smg5	98	46.575	Eptatretus_burgeri
ENSVVUG00000005887	SMG5	100	94.587	ENSEASG00005019122	SMG5	100	94.587	Equus_asinus_asinus
ENSVVUG00000005887	SMG5	100	94.587	ENSECAG00000001389	SMG5	100	94.587	Equus_caballus
ENSVVUG00000005887	SMG5	72	97.118	ENSEEUG00000012690	SMG5	73	97.118	Erinaceus_europaeus
ENSVVUG00000005887	SMG5	99	65.370	ENSELUG00000012585	smg5	99	65.272	Esox_lucius
ENSVVUG00000005887	SMG5	100	97.036	ENSFCAG00000011783	SMG5	100	97.036	Felis_catus
ENSVVUG00000005887	SMG5	58	81.469	ENSFALG00000001166	-	99	81.575	Ficedula_albicollis
ENSVVUG00000005887	SMG5	98	91.734	ENSFDAG00000017388	SMG5	100	91.633	Fukomys_damarensis
ENSVVUG00000005887	SMG5	97	61.958	ENSFHEG00000013939	smg5	95	68.717	Fundulus_heteroclitus
ENSVVUG00000005887	SMG5	99	60.633	ENSGMOG00000007310	smg5	99	60.510	Gadus_morhua
ENSVVUG00000005887	SMG5	99	76.760	ENSGALG00000029918	-	100	76.571	Gallus_gallus
ENSVVUG00000005887	SMG5	81	77.251	ENSGAFG00000021691	smg5	95	66.773	Gambusia_affinis
ENSVVUG00000005887	SMG5	100	78.463	ENSGAGG00000016131	SMG5	100	78.368	Gopherus_agassizii
ENSVVUG00000005887	SMG5	100	93.602	ENSGGOG00000010932	SMG5	100	94.291	Gorilla_gorilla
ENSVVUG00000005887	SMG5	99	64.694	ENSHBUG00000008654	smg5	99	65.444	Haplochromis_burtoni
ENSVVUG00000005887	SMG5	100	91.061	ENSHGLG00000019152	SMG5	100	91.552	Heterocephalus_glaber_female
ENSVVUG00000005887	SMG5	90	91.009	ENSHGLG00100015948	SMG5	99	91.557	Heterocephalus_glaber_male
ENSVVUG00000005887	SMG5	86	73.171	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSVVUG00000005887	SMG5	99	61.588	ENSIPUG00000006624	Smg5	99	61.308	Ictalurus_punctatus
ENSVVUG00000005887	SMG5	100	93.799	ENSSTOG00000001780	SMG5	100	94.395	Ictidomys_tridecemlineatus
ENSVVUG00000005887	SMG5	100	90.677	ENSJJAG00000022763	Smg5	100	90.972	Jaculus_jaculus
ENSVVUG00000005887	SMG5	91	77.488	ENSKMAG00000014586	smg5	99	60.571	Kryptolebias_marmoratus
ENSVVUG00000005887	SMG5	99	65.537	ENSLBEG00000002145	smg5	99	65.112	Labrus_bergylta
ENSVVUG00000005887	SMG5	100	63.939	ENSLACG00000010521	SMG5	100	63.973	Latimeria_chalumnae
ENSVVUG00000005887	SMG5	97	78.140	ENSLOCG00000008380	smg5	99	61.688	Lepisosteus_oculatus
ENSVVUG00000005887	SMG5	100	93.602	ENSLAFG00000006241	SMG5	100	93.602	Loxodonta_africana
ENSVVUG00000005887	SMG5	100	93.701	ENSMFAG00000045357	SMG5	100	94.291	Macaca_fascicularis
ENSVVUG00000005887	SMG5	100	93.701	ENSMMUG00000000090	SMG5	100	94.291	Macaca_mulatta
ENSVVUG00000005887	SMG5	100	93.602	ENSMNEG00000044425	SMG5	100	94.193	Macaca_nemestrina
ENSVVUG00000005887	SMG5	100	88.039	ENSMLEG00000041192	SMG5	100	88.039	Mandrillus_leucophaeus
ENSVVUG00000005887	SMG5	99	60.197	ENSMAMG00000010683	smg5	99	60.286	Mastacembelus_armatus
ENSVVUG00000005887	SMG5	62	58.742	ENSMZEG00005016543	smg5	100	59.422	Maylandia_zebra
ENSVVUG00000005887	SMG5	99	63.391	ENSMZEG00005015815	smg5	99	63.593	Maylandia_zebra
ENSVVUG00000005887	SMG5	100	89.676	ENSMAUG00000010381	Smg5	100	89.784	Mesocricetus_auratus
ENSVVUG00000005887	SMG5	100	93.996	ENSMICG00000002257	SMG5	100	94.685	Microcebus_murinus
ENSVVUG00000005887	SMG5	100	89.794	ENSMOCG00000016590	Smg5	100	89.804	Microtus_ochrogaster
ENSVVUG00000005887	SMG5	99	58.094	ENSMMOG00000017199	smg5	99	59.856	Mola_mola
ENSVVUG00000005887	SMG5	91	39.108	ENSMODG00000004735	-	100	39.200	Monodelphis_domestica
ENSVVUG00000005887	SMG5	97	34.158	ENSMODG00000004511	-	99	33.663	Monodelphis_domestica
ENSVVUG00000005887	SMG5	82	37.324	ENSMODG00000004532	-	85	37.867	Monodelphis_domestica
ENSVVUG00000005887	SMG5	87	87.950	ENSMODG00000016901	SMG5	98	88.626	Monodelphis_domestica
ENSVVUG00000005887	SMG5	76	37.028	ENSMODG00000010675	-	84	37.401	Monodelphis_domestica
ENSVVUG00000005887	SMG5	99	59.034	ENSMALG00000010375	smg5	99	59.445	Monopterus_albus
ENSVVUG00000005887	SMG5	100	90.855	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSVVUG00000005887	SMG5	100	90.954	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSVVUG00000005887	SMG5	100	90.481	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSVVUG00000005887	SMG5	100	90.855	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSVVUG00000005887	SMG5	93	95.026	ENSMPUG00000004546	SMG5	100	95.026	Mustela_putorius_furo
ENSVVUG00000005887	SMG5	100	92.534	ENSMLUG00000008518	SMG5	100	92.466	Myotis_lucifugus
ENSVVUG00000005887	SMG5	98	44.501	ENSNGAG00000012101	-	98	44.702	Nannospalax_galili
ENSVVUG00000005887	SMG5	100	91.347	ENSNGAG00000020706	Smg5	100	91.839	Nannospalax_galili
ENSVVUG00000005887	SMG5	96	62.993	ENSNBRG00000004332	smg5	98	63.572	Neolamprologus_brichardi
ENSVVUG00000005887	SMG5	100	93.307	ENSNLEG00000012439	SMG5	100	93.996	Nomascus_leucogenys
ENSVVUG00000005887	SMG5	100	86.529	ENSMEUG00000012834	SMG5	100	86.037	Notamacropus_eugenii
ENSVVUG00000005887	SMG5	100	91.437	ENSOPRG00000009152	SMG5	100	91.732	Ochotona_princeps
ENSVVUG00000005887	SMG5	100	92.815	ENSODEG00000012237	SMG5	100	93.307	Octodon_degus
ENSVVUG00000005887	SMG5	99	59.947	ENSONIG00000008632	smg5	99	59.893	Oreochromis_niloticus
ENSVVUG00000005887	SMG5	89	40.949	ENSOCUG00000023338	-	99	40.330	Oryctolagus_cuniculus
ENSVVUG00000005887	SMG5	98	93.246	ENSOCUG00000012886	SMG5	100	93.952	Oryctolagus_cuniculus
ENSVVUG00000005887	SMG5	99	64.125	ENSORLG00020013127	smg5	99	65.490	Oryzias_latipes_hni
ENSVVUG00000005887	SMG5	99	64.035	ENSORLG00015019014	smg5	99	65.494	Oryzias_latipes_hsok
ENSVVUG00000005887	SMG5	82	57.979	ENSOMEG00000021330	smg5	92	60.000	Oryzias_melastigma
ENSVVUG00000005887	SMG5	100	93.406	ENSOGAG00000004966	SMG5	100	93.996	Otolemur_garnettii
ENSVVUG00000005887	SMG5	100	93.799	ENSOARG00000005778	SMG5	100	93.799	Ovis_aries
ENSVVUG00000005887	SMG5	99	44.063	ENSOARG00000011963	-	99	43.969	Ovis_aries
ENSVVUG00000005887	SMG5	100	93.504	ENSPPAG00000011996	SMG5	100	94.193	Pan_paniscus
ENSVVUG00000005887	SMG5	98	97.062	ENSPPRG00000011901	SMG5	100	97.062	Panthera_pardus
ENSVVUG00000005887	SMG5	99	88.600	ENSPTIG00000007892	SMG5	99	88.188	Panthera_tigris_altaica
ENSVVUG00000005887	SMG5	100	93.701	ENSPTRG00000049282	-	100	94.390	Pan_troglodytes
ENSVVUG00000005887	SMG5	100	93.701	ENSPTRG00000023925	SMG5	100	94.390	Pan_troglodytes
ENSVVUG00000005887	SMG5	100	93.799	ENSPANG00000011201	SMG5	100	94.390	Papio_anubis
ENSVVUG00000005887	SMG5	99	65.745	ENSPKIG00000009402	smg5	99	66.075	Paramormyrops_kingsleyae
ENSVVUG00000005887	SMG5	98	79.088	ENSPSIG00000015198	SMG5	100	79.286	Pelodiscus_sinensis
ENSVVUG00000005887	SMG5	99	60.313	ENSPMGG00000010465	smg5	99	59.686	Periophthalmus_magnuspinnatus
ENSVVUG00000005887	SMG5	100	90.757	ENSPEMG00000001819	Smg5	100	90.864	Peromyscus_maniculatus_bairdii
ENSVVUG00000005887	SMG5	55	46.208	ENSPEMG00000010022	-	95	46.032	Peromyscus_maniculatus_bairdii
ENSVVUG00000005887	SMG5	99	50.194	ENSPMAG00000000410	smg5	100	50.615	Petromyzon_marinus
ENSVVUG00000005887	SMG5	100	87.917	ENSPCIG00000018938	SMG5	100	88.409	Phascolarctos_cinereus
ENSVVUG00000005887	SMG5	91	77.488	ENSPFOG00000010191	smg5	99	61.960	Poecilia_formosa
ENSVVUG00000005887	SMG5	51	60.297	ENSPLAG00000009332	smg5	99	61.960	Poecilia_latipinna
ENSVVUG00000005887	SMG5	91	77.488	ENSPMEG00000014105	smg5	99	64.802	Poecilia_mexicana
ENSVVUG00000005887	SMG5	91	77.488	ENSPREG00000017713	smg5	99	61.601	Poecilia_reticulata
ENSVVUG00000005887	SMG5	100	93.799	ENSPPYG00000000723	SMG5	100	94.488	Pongo_abelii
ENSVVUG00000005887	SMG5	75	94.475	ENSPCAG00000008412	SMG5	81	94.475	Procavia_capensis
ENSVVUG00000005887	SMG5	100	93.996	ENSPCOG00000004741	SMG5	100	94.685	Propithecus_coquereli
ENSVVUG00000005887	SMG5	100	84.744	ENSPVAG00000016748	SMG5	100	84.744	Pteropus_vampyrus
ENSVVUG00000005887	SMG5	99	59.717	ENSPNYG00000013397	smg5	99	59.947	Pundamilia_nyererei
ENSVVUG00000005887	SMG5	99	62.113	ENSPNAG00000028363	smg5	99	61.749	Pygocentrus_nattereri
ENSVVUG00000005887	SMG5	100	91.347	ENSRNOG00000019590	Smg5	100	91.257	Rattus_norvegicus
ENSVVUG00000005887	SMG5	100	93.799	ENSRBIG00000027428	SMG5	100	94.390	Rhinopithecus_bieti
ENSVVUG00000005887	SMG5	100	93.701	ENSRROG00000030035	SMG5	100	94.291	Rhinopithecus_roxellana
ENSVVUG00000005887	SMG5	100	93.799	ENSSBOG00000033339	SMG5	100	94.488	Saimiri_boliviensis_boliviensis
ENSVVUG00000005887	SMG5	87	39.895	ENSSHAG00000000561	-	98	39.895	Sarcophilus_harrisii
ENSVVUG00000005887	SMG5	64	39.766	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSVVUG00000005887	SMG5	98	87.387	ENSSHAG00000014163	SMG5	100	87.988	Sarcophilus_harrisii
ENSVVUG00000005887	SMG5	99	33.689	ENSSHAG00000009572	-	99	33.236	Sarcophilus_harrisii
ENSVVUG00000005887	SMG5	99	66.568	ENSSFOG00015024175	smg5	99	66.372	Scleropages_formosus
ENSVVUG00000005887	SMG5	92	76.157	ENSSMAG00000013059	smg5	99	61.449	Scophthalmus_maximus
ENSVVUG00000005887	SMG5	99	59.486	ENSSDUG00000007122	smg5	99	60.958	Seriola_dumerili
ENSVVUG00000005887	SMG5	99	59.609	ENSSLDG00000011418	smg5	99	61.264	Seriola_lalandi_dorsalis
ENSVVUG00000005887	SMG5	90	80.698	ENSSARG00000012484	SMG5	100	80.589	Sorex_araneus
ENSVVUG00000005887	SMG5	93	76.596	ENSSPUG00000002260	SMG5	100	76.190	Sphenodon_punctatus
ENSVVUG00000005887	SMG5	91	77.123	ENSSPAG00000014266	smg5	98	65.209	Stegastes_partitus
ENSVVUG00000005887	SMG5	99	73.267	ENSSSCG00000039308	-	100	73.465	Sus_scrofa
ENSVVUG00000005887	SMG5	100	95.177	ENSSSCG00000006490	-	100	95.177	Sus_scrofa
ENSVVUG00000005887	SMG5	99	79.525	ENSTGUG00000003748	-	100	79.492	Taeniopygia_guttata
ENSVVUG00000005887	SMG5	99	64.085	ENSTRUG00000012580	smg5	99	63.698	Takifugu_rubripes
ENSVVUG00000005887	SMG5	99	64.694	ENSTNIG00000010303	smg5	99	64.369	Tetraodon_nigroviridis
ENSVVUG00000005887	SMG5	60	99.015	ENSTBEG00000002777	SMG5	60	99.015	Tupaia_belangeri
ENSVVUG00000005887	SMG5	100	89.567	ENSTTRG00000001401	SMG5	100	89.567	Tursiops_truncatus
ENSVVUG00000005887	SMG5	100	96.637	ENSUAMG00000013721	SMG5	100	96.637	Ursus_americanus
ENSVVUG00000005887	SMG5	98	91.616	ENSUMAG00000018041	SMG5	97	91.616	Ursus_maritimus
ENSVVUG00000005887	SMG5	98	85.166	ENSVPAG00000009446	SMG5	99	85.166	Vicugna_pacos
ENSVVUG00000005887	SMG5	76	64.817	ENSXETG00000033791	SMG5	99	64.817	Xenopus_tropicalis
ENSVVUG00000005887	SMG5	68	77.014	ENSXCOG00000004379	smg5	95	69.231	Xiphophorus_couchianus
ENSVVUG00000005887	SMG5	91	76.777	ENSXMAG00000013499	smg5	99	64.689	Xiphophorus_maculatus