EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVVUG00000006166 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 101524 bases
Position: chrNBDQ01000005.1:6005853-6107376
Accession: 112933410
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000008148	Upf2	PF04050.14	1.5e-32	1	1
ENSVVUP00000008154	Upf2	PF04050.14	3.3e-16	1	1
ENSVVUP00000008154	MIF4G	PF02854.19	9.4e-76	1	3
ENSVVUP00000008154	MIF4G	PF02854.19	9.4e-76	2	3
ENSVVUP00000008154	MIF4G	PF02854.19	9.4e-76	3	3
ENSVVUP00000008148	MIF4G	PF02854.19	1.2e-75	1	3
ENSVVUP00000008148	MIF4G	PF02854.19	1.2e-75	2	3
ENSVVUP00000008148	MIF4G	PF02854.19	1.2e-75	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000010767	UPF2-201	5409	XM_026016590	ENSVVUP00000008148	1271 (aa)	XP_025872375	UPI000DF6EB0D
ENSVVUT00000010773	UPF2-202	5146	-	ENSVVUP00000008154	1192 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000006166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000006166's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000006166	UPF2	100	97.642	ENSG00000151461	UPF2	100	97.642	Homo_sapiens
ENSVVUG00000006166	UPF2	99	79.013	ENSAPOG00000015837	UPF2	100	78.857	Acanthochromis_polyacanthus
ENSVVUG00000006166	UPF2	100	99.449	ENSAMEG00000004586	UPF2	100	99.449	Ailuropoda_melanoleuca
ENSVVUG00000006166	UPF2	99	82.969	ENSACIG00000018078	UPF2	100	82.891	Amphilophus_citrinellus
ENSVVUG00000006166	UPF2	100	83.151	ENSAOCG00000016766	UPF2	100	83.229	Amphiprion_ocellaris
ENSVVUG00000006166	UPF2	100	83.229	ENSAPEG00000019084	UPF2	100	83.307	Amphiprion_percula
ENSVVUG00000006166	UPF2	100	82.893	ENSATEG00000021677	UPF2	99	82.866	Anabas_testudineus
ENSVVUG00000006166	UPF2	100	87.107	ENSAPLG00000010287	UPF2	90	91.486	Anas_platyrhynchos
ENSVVUG00000006166	UPF2	100	92.683	ENSACAG00000009259	UPF2	100	92.683	Anolis_carolinensis
ENSVVUG00000006166	UPF2	99	87.579	ENSANAG00000028451	UPF2	99	86.321	Aotus_nancymaae
ENSVVUG00000006166	UPF2	100	81.357	ENSACLG00000012696	UPF2	100	83.151	Astatotilapia_calliptera
ENSVVUG00000006166	UPF2	99	83.333	ENSAMXG00000013700	UPF2	99	83.725	Astyanax_mexicanus
ENSVVUG00000006166	UPF2	100	99.056	ENSBTAG00000000288	UPF2	100	99.056	Bos_taurus
ENSVVUG00000006166	UPF2	100	97.642	ENSCJAG00000020685	UPF2	100	97.642	Callithrix_jacchus
ENSVVUG00000006166	UPF2	100	99.921	ENSCAFG00000004839	UPF2	100	99.921	Canis_familiaris
ENSVVUG00000006166	UPF2	99	97.478	ENSCAFG00020005882	UPF2	98	99.703	Canis_lupus_dingo
ENSVVUG00000006166	UPF2	100	99.135	ENSCHIG00000020359	UPF2	100	99.135	Capra_hircus
ENSVVUG00000006166	UPF2	100	97.482	ENSTSYG00000000935	UPF2	100	97.482	Carlito_syrichta
ENSVVUG00000006166	UPF2	90	89.479	ENSCAPG00000016658	UPF2	94	87.058	Cavia_aperea
ENSVVUG00000006166	UPF2	99	96.035	ENSCPOG00000008809	UPF2	99	96.035	Cavia_porcellus
ENSVVUG00000006166	UPF2	100	91.345	ENSCCAG00000035991	UPF2	100	91.345	Cebus_capucinus
ENSVVUG00000006166	UPF2	100	97.799	ENSCATG00000032679	UPF2	100	97.799	Cercocebus_atys
ENSVVUG00000006166	UPF2	100	97.797	ENSCLAG00000011434	UPF2	100	97.797	Chinchilla_lanigera
ENSVVUG00000006166	UPF2	100	97.877	ENSCSAG00000013372	UPF2	100	97.877	Chlorocebus_sabaeus
ENSVVUG00000006166	UPF2	87	98.661	ENSCHOG00000000422	UPF2	89	98.661	Choloepus_hoffmanni
ENSVVUG00000006166	UPF2	99	92.277	ENSCPBG00000027823	UPF2	100	93.144	Chrysemys_picta_bellii
ENSVVUG00000006166	UPF2	79	48.963	ENSCSAVG00000007772	-	79	50.382	Ciona_savignyi
ENSVVUG00000006166	UPF2	99	94.039	ENSCANG00000040396	UPF2	100	92.054	Colobus_angolensis_palliatus
ENSVVUG00000006166	UPF2	100	98.190	ENSCGRG00001019347	Upf2	100	98.190	Cricetulus_griseus_chok1gshd
ENSVVUG00000006166	UPF2	100	98.190	ENSCGRG00000017993	Upf2	100	98.190	Cricetulus_griseus_crigri
ENSVVUG00000006166	UPF2	91	81.466	ENSCSEG00000003520	UPF2	91	80.739	Cynoglossus_semilaevis
ENSVVUG00000006166	UPF2	99	82.875	ENSCVAG00000006167	UPF2	100	82.404	Cyprinodon_variegatus
ENSVVUG00000006166	UPF2	100	98.662	ENSDNOG00000018160	UPF2	100	98.662	Dasypus_novemcinctus
ENSVVUG00000006166	UPF2	100	97.876	ENSDORG00000002478	Upf2	100	97.876	Dipodomys_ordii
ENSVVUG00000006166	UPF2	89	36.469	FBgn0029992	Upf2	73	39.542	Drosophila_melanogaster
ENSVVUG00000006166	UPF2	73	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSVVUG00000006166	UPF2	69	68.657	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSVVUG00000006166	UPF2	100	98.662	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSVVUG00000006166	UPF2	100	98.741	ENSECAG00000017022	UPF2	100	98.741	Equus_caballus
ENSVVUG00000006166	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSVVUG00000006166	UPF2	99	81.861	ENSELUG00000012014	UPF2	100	82.271	Esox_lucius
ENSVVUG00000006166	UPF2	100	99.292	ENSFCAG00000005785	UPF2	100	99.292	Felis_catus
ENSVVUG00000006166	UPF2	100	94.099	ENSFALG00000001889	UPF2	98	94.099	Ficedula_albicollis
ENSVVUG00000006166	UPF2	100	97.640	ENSFDAG00000014348	UPF2	100	97.640	Fukomys_damarensis
ENSVVUG00000006166	UPF2	99	83.636	ENSFHEG00000009826	UPF2	99	83.294	Fundulus_heteroclitus
ENSVVUG00000006166	UPF2	91	83.765	ENSGMOG00000005557	UPF2	91	83.549	Gadus_morhua
ENSVVUG00000006166	UPF2	100	94.261	ENSGALG00000033772	UPF2	100	94.261	Gallus_gallus
ENSVVUG00000006166	UPF2	100	80.031	ENSGAFG00000020867	UPF2	100	82.059	Gambusia_affinis
ENSVVUG00000006166	UPF2	90	84.469	ENSGACG00000001080	UPF2	100	82.734	Gasterosteus_aculeatus
ENSVVUG00000006166	UPF2	100	93.627	ENSGAGG00000002700	UPF2	100	93.627	Gopherus_agassizii
ENSVVUG00000006166	UPF2	100	97.642	ENSGGOG00000001479	UPF2	100	97.642	Gorilla_gorilla
ENSVVUG00000006166	UPF2	100	81.201	ENSHBUG00000004249	UPF2	100	83.125	Haplochromis_burtoni
ENSVVUG00000006166	UPF2	99	86.772	ENSHGLG00000003822	-	99	85.276	Heterocephalus_glaber_female
ENSVVUG00000006166	UPF2	100	97.797	ENSHGLG00000015176	-	100	97.797	Heterocephalus_glaber_female
ENSVVUG00000006166	UPF2	99	94.563	ENSHGLG00100010036	UPF2	89	98.383	Heterocephalus_glaber_male
ENSVVUG00000006166	UPF2	100	80.886	ENSHCOG00000004025	UPF2	99	80.886	Hippocampus_comes
ENSVVUG00000006166	UPF2	100	82.137	ENSIPUG00000015524	UPF2	100	82.514	Ictalurus_punctatus
ENSVVUG00000006166	UPF2	100	98.033	ENSSTOG00000013075	UPF2	100	98.033	Ictidomys_tridecemlineatus
ENSVVUG00000006166	UPF2	100	96.932	ENSJJAG00000004913	Upf2	100	96.932	Jaculus_jaculus
ENSVVUG00000006166	UPF2	92	84.936	ENSKMAG00000001071	UPF2	99	82.964	Kryptolebias_marmoratus
ENSVVUG00000006166	UPF2	85	83.104	ENSLBEG00000000728	-	93	83.202	Labrus_bergylta
ENSVVUG00000006166	UPF2	100	83.450	ENSLBEG00000016394	-	99	83.502	Labrus_bergylta
ENSVVUG00000006166	UPF2	99	79.702	ENSLACG00000015945	UPF2	100	79.937	Latimeria_chalumnae
ENSVVUG00000006166	UPF2	99	86.761	ENSLOCG00000015698	UPF2	100	86.682	Lepisosteus_oculatus
ENSVVUG00000006166	UPF2	100	97.720	ENSMFAG00000043865	UPF2	100	97.720	Macaca_fascicularis
ENSVVUG00000006166	UPF2	100	97.720	ENSMMUG00000008241	UPF2	100	97.720	Macaca_mulatta
ENSVVUG00000006166	UPF2	86	96.976	ENSMNEG00000008062	UPF2	100	96.976	Macaca_nemestrina
ENSVVUG00000006166	UPF2	95	99.275	ENSMLEG00000036120	UPF2	100	99.275	Mandrillus_leucophaeus
ENSVVUG00000006166	UPF2	100	82.737	ENSMAMG00000018276	UPF2	100	82.788	Mastacembelus_armatus
ENSVVUG00000006166	UPF2	100	81.357	ENSMZEG00005021595	UPF2	100	83.151	Maylandia_zebra
ENSVVUG00000006166	UPF2	99	93.627	ENSMGAG00000004573	UPF2	99	93.627	Meleagris_gallopavo
ENSVVUG00000006166	UPF2	100	95.830	ENSMAUG00000016512	Upf2	100	95.830	Mesocricetus_auratus
ENSVVUG00000006166	UPF2	95	98.980	ENSMICG00000001716	UPF2	99	98.964	Microcebus_murinus
ENSVVUG00000006166	UPF2	100	97.089	ENSMOCG00000008263	Upf2	100	97.089	Microtus_ochrogaster
ENSVVUG00000006166	UPF2	90	83.203	ENSMMOG00000006528	UPF2	100	79.437	Mola_mola
ENSVVUG00000006166	UPF2	100	96.381	ENSMODG00000016794	UPF2	100	96.381	Monodelphis_domestica
ENSVVUG00000006166	UPF2	99	82.877	ENSMALG00000002663	UPF2	100	82.850	Monopterus_albus
ENSVVUG00000006166	UPF2	100	97.482	MGP_CAROLIEiJ_G0023157	Upf2	100	98.341	Mus_caroli
ENSVVUG00000006166	UPF2	100	97.482	ENSMUSG00000043241	Upf2	100	97.482	Mus_musculus
ENSVVUG00000006166	UPF2	100	97.089	MGP_PahariEiJ_G0019217	Upf2	100	97.333	Mus_pahari
ENSVVUG00000006166	UPF2	100	97.718	MGP_SPRETEiJ_G0024075	Upf2	100	97.718	Mus_spretus
ENSVVUG00000006166	UPF2	100	99.292	ENSMPUG00000001064	UPF2	100	99.292	Mustela_putorius_furo
ENSVVUG00000006166	UPF2	99	98.115	ENSMLUG00000000228	UPF2	100	98.115	Myotis_lucifugus
ENSVVUG00000006166	UPF2	100	81.357	ENSNBRG00000013629	UPF2	100	83.151	Neolamprologus_brichardi
ENSVVUG00000006166	UPF2	100	97.642	ENSNLEG00000012058	UPF2	100	97.642	Nomascus_leucogenys
ENSVVUG00000006166	UPF2	56	97.409	ENSMEUG00000002180	-	54	97.409	Notamacropus_eugenii
ENSVVUG00000006166	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSVVUG00000006166	UPF2	100	97.482	ENSODEG00000001290	UPF2	100	97.482	Octodon_degus
ENSVVUG00000006166	UPF2	100	81.435	ENSONIG00000017991	UPF2	100	83.229	Oreochromis_niloticus
ENSVVUG00000006166	UPF2	99	97.492	ENSOCUG00000006230	UPF2	100	97.492	Oryctolagus_cuniculus
ENSVVUG00000006166	UPF2	100	81.712	ENSORLG00000017189	UPF2	100	82.215	Oryzias_latipes
ENSVVUG00000006166	UPF2	100	81.712	ENSORLG00020005969	UPF2	100	82.215	Oryzias_latipes_hni
ENSVVUG00000006166	UPF2	100	81.712	ENSORLG00015005713	UPF2	100	82.215	Oryzias_latipes_hsok
ENSVVUG00000006166	UPF2	100	77.593	ENSOMEG00000023420	UPF2	98	79.359	Oryzias_melastigma
ENSVVUG00000006166	UPF2	100	97.718	ENSOGAG00000005796	UPF2	100	97.718	Otolemur_garnettii
ENSVVUG00000006166	UPF2	100	98.979	ENSOARG00000014587	UPF2	100	98.979	Ovis_aries
ENSVVUG00000006166	UPF2	99	93.667	ENSPPAG00000037953	UPF2	100	94.409	Pan_paniscus
ENSVVUG00000006166	UPF2	100	99.292	ENSPPRG00000000690	UPF2	100	99.292	Panthera_pardus
ENSVVUG00000006166	UPF2	100	99.292	ENSPTIG00000008867	UPF2	100	99.292	Panthera_tigris_altaica
ENSVVUG00000006166	UPF2	100	97.642	ENSPTRG00000002291	UPF2	100	97.642	Pan_troglodytes
ENSVVUG00000006166	UPF2	100	97.720	ENSPANG00000023399	UPF2	100	97.720	Papio_anubis
ENSVVUG00000006166	UPF2	100	82.137	ENSPKIG00000025502	UPF2	100	81.201	Paramormyrops_kingsleyae
ENSVVUG00000006166	UPF2	63	92.563	ENSPSIG00000015158	UPF2	95	92.563	Pelodiscus_sinensis
ENSVVUG00000006166	UPF2	99	80.518	ENSPMGG00000005259	UPF2	100	81.304	Periophthalmus_magnuspinnatus
ENSVVUG00000006166	UPF2	93	95.918	ENSPEMG00000015731	Upf2	99	95.918	Peromyscus_maniculatus_bairdii
ENSVVUG00000006166	UPF2	100	96.223	ENSPCIG00000006656	UPF2	100	96.223	Phascolarctos_cinereus
ENSVVUG00000006166	UPF2	100	80.187	ENSPFOG00000017118	UPF2	100	82.371	Poecilia_formosa
ENSVVUG00000006166	UPF2	100	80.187	ENSPLAG00000005094	UPF2	100	82.371	Poecilia_latipinna
ENSVVUG00000006166	UPF2	100	80.187	ENSPMEG00000017009	UPF2	100	82.371	Poecilia_mexicana
ENSVVUG00000006166	UPF2	99	80.188	ENSPREG00000021880	UPF2	100	82.537	Poecilia_reticulata
ENSVVUG00000006166	UPF2	66	98.923	ENSPPYG00000002089	-	100	98.923	Pongo_abelii
ENSVVUG00000006166	UPF2	100	84.500	ENSPCAG00000000684	UPF2	100	84.500	Procavia_capensis
ENSVVUG00000006166	UPF2	99	94.878	ENSPCOG00000021656	UPF2	100	94.957	Propithecus_coquereli
ENSVVUG00000006166	UPF2	100	91.195	ENSPVAG00000017286	UPF2	100	91.195	Pteropus_vampyrus
ENSVVUG00000006166	UPF2	99	78.906	ENSPNYG00000017096	UPF2	100	80.703	Pundamilia_nyererei
ENSVVUG00000006166	UPF2	100	83.541	ENSPNAG00000009357	UPF2	100	84.087	Pygocentrus_nattereri
ENSVVUG00000006166	UPF2	99	91.444	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSVVUG00000006166	UPF2	99	96.690	ENSRBIG00000037780	UPF2	100	96.690	Rhinopithecus_bieti
ENSVVUG00000006166	UPF2	100	97.642	ENSRROG00000043547	UPF2	100	97.642	Rhinopithecus_roxellana
ENSVVUG00000006166	UPF2	100	97.406	ENSSBOG00000020012	UPF2	100	97.406	Saimiri_boliviensis_boliviensis
ENSVVUG00000006166	UPF2	100	81.684	ENSSFOG00015023788	upf2	100	83.087	Scleropages_formosus
ENSVVUG00000006166	UPF2	90	83.088	ENSSMAG00000007637	UPF2	91	83.248	Scophthalmus_maximus
ENSVVUG00000006166	UPF2	100	83.073	ENSSDUG00000017244	UPF2	99	83.307	Seriola_dumerili
ENSVVUG00000006166	UPF2	99	81.363	ENSSLDG00000016866	UPF2	100	81.676	Seriola_lalandi_dorsalis
ENSVVUG00000006166	UPF2	100	96.223	ENSSARG00000008615	UPF2	100	96.223	Sorex_araneus
ENSVVUG00000006166	UPF2	99	90.866	ENSSPUG00000014544	UPF2	99	90.866	Sphenodon_punctatus
ENSVVUG00000006166	UPF2	68	98.964	ENSSSCG00000011117	-	100	98.964	Sus_scrofa
ENSVVUG00000006166	UPF2	99	94.085	ENSTGUG00000002163	-	100	94.085	Taeniopygia_guttata
ENSVVUG00000006166	UPF2	100	82.477	ENSTRUG00000007519	UPF2	99	82.605	Takifugu_rubripes
ENSVVUG00000006166	UPF2	99	90.517	ENSTBEG00000012679	UPF2	93	90.855	Tupaia_belangeri
ENSVVUG00000006166	UPF2	100	98.741	ENSTTRG00000016388	UPF2	100	98.741	Tursiops_truncatus
ENSVVUG00000006166	UPF2	94	99.432	ENSUAMG00000023560	UPF2	100	99.432	Ursus_americanus
ENSVVUG00000006166	UPF2	100	99.449	ENSUMAG00000012953	UPF2	95	99.449	Ursus_maritimus
ENSVVUG00000006166	UPF2	88	95.224	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSVVUG00000006166	UPF2	100	82.552	ENSXETG00000033103	UPF2	100	81.255	Xenopus_tropicalis
ENSVVUG00000006166	UPF2	92	84.530	ENSXCOG00000011604	UPF2	100	82.031	Xiphophorus_couchianus
ENSVVUG00000006166	UPF2	92	84.983	ENSXMAG00000017209	UPF2	100	82.059	Xiphophorus_maculatus