EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000006414 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 95631 bases
Position: chrNBDQ01000023.1:1390779-1486409
Accession: 112918587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000008554	RRM_1	PF00076.22	1.5e-32	1	2
ENSVVUP00000008554	RRM_1	PF00076.22	1.5e-32	2	2
ENSVVUP00000008556	RRM_1	PF00076.22	1.5e-32	1	2
ENSVVUP00000008556	RRM_1	PF00076.22	1.5e-32	2	2
ENSVVUP00000008542	RRM_1	PF00076.22	1.6e-32	1	2
ENSVVUP00000008542	RRM_1	PF00076.22	1.6e-32	2	2
ENSVVUP00000008549	RRM_1	PF00076.22	1.7e-32	1	2
ENSVVUP00000008549	RRM_1	PF00076.22	1.7e-32	2	2
ENSVVUP00000008544	RRM_1	PF00076.22	3.8e-32	1	2
ENSVVUP00000008544	RRM_1	PF00076.22	3.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000011272	PSPC1-203	1764	-	ENSVVUP00000008549	399 (aa)	-	-
ENSVVUT00000011265	PSPC1-201	2998	-	ENSVVUP00000008542	391 (aa)	-	-
ENSVVUT00000011277	PSPC1-204	1155	-	ENSVVUP00000008554	384 (aa)	-	-
ENSVVUT00000011267	PSPC1-202	1566	XM_025996623	ENSVVUP00000008544	521 (aa)	XP_025852408	UPI000DC6BD15
ENSVVUT00000011281	PSPC1-205	1164	-	ENSVVUP00000008556	387 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000006414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000006414's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000006414	PSPC1	61	68.067	ENSVVUG00000000874	-	82	61.538
ENSVVUG00000006414	PSPC1	74	73.356	ENSVVUG00000003390	-	77	66.205

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000006414	PSPC1	100	98.964	ENSG00000121390	PSPC1	100	98.853	Homo_sapiens
ENSVVUG00000006414	PSPC1	84	81.173	ENSAPOG00000015946	pspc1	79	73.721	Acanthochromis_polyacanthus
ENSVVUG00000006414	PSPC1	100	99.616	ENSAMEG00000017420	PSPC1	100	99.616	Ailuropoda_melanoleuca
ENSVVUG00000006414	PSPC1	99	63.868	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSVVUG00000006414	PSPC1	84	80.556	ENSAOCG00000005279	pspc1	78	73.256	Amphiprion_ocellaris
ENSVVUG00000006414	PSPC1	84	80.556	ENSAPEG00000015927	pspc1	79	73.256	Amphiprion_percula
ENSVVUG00000006414	PSPC1	84	67.593	ENSATEG00000004878	pspc1	76	62.350	Anabas_testudineus
ENSVVUG00000006414	PSPC1	82	75.786	ENSAPLG00000003643	SFPQ	83	59.013	Anas_platyrhynchos
ENSVVUG00000006414	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSVVUG00000006414	PSPC1	75	70.732	ENSACAG00000013307	-	55	66.102	Anolis_carolinensis
ENSVVUG00000006414	PSPC1	85	96.626	ENSACAG00000002093	PSPC1	88	91.845	Anolis_carolinensis
ENSVVUG00000006414	PSPC1	100	99.219	ENSANAG00000000059	PSPC1	100	98.848	Aotus_nancymaae
ENSVVUG00000006414	PSPC1	99	64.000	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSVVUG00000006414	PSPC1	84	79.573	ENSAMXG00000036881	pspc1	80	73.103	Astyanax_mexicanus
ENSVVUG00000006414	PSPC1	100	96.353	ENSBTAG00000003934	PSPC1	100	96.353	Bos_taurus
ENSVVUG00000006414	PSPC1	100	99.219	ENSCJAG00000004554	PSPC1	100	98.848	Callithrix_jacchus
ENSVVUG00000006414	PSPC1	100	100.000	ENSCAFG00020002009	PSPC1	100	100.000	Canis_lupus_dingo
ENSVVUG00000006414	PSPC1	100	96.353	ENSCHIG00000016708	PSPC1	100	96.353	Capra_hircus
ENSVVUG00000006414	PSPC1	77	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSVVUG00000006414	PSPC1	100	97.917	ENSCPOG00000000395	PSPC1	100	97.313	Cavia_porcellus
ENSVVUG00000006414	PSPC1	100	99.219	ENSCCAG00000033498	PSPC1	100	98.848	Cebus_capucinus
ENSVVUG00000006414	PSPC1	100	98.705	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSVVUG00000006414	PSPC1	88	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSVVUG00000006414	PSPC1	100	96.373	ENSCHOG00000008913	PSPC1	100	90.249	Choloepus_hoffmanni
ENSVVUG00000006414	PSPC1	99	86.692	ENSCPBG00000020859	PSPC1	99	87.838	Chrysemys_picta_bellii
ENSVVUG00000006414	PSPC1	80	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSVVUG00000006414	PSPC1	68	100.000	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSVVUG00000006414	PSPC1	100	97.409	ENSCGRG00001018368	Pspc1	100	97.132	Cricetulus_griseus_chok1gshd
ENSVVUG00000006414	PSPC1	100	97.409	ENSCGRG00000011724	Pspc1	100	97.132	Cricetulus_griseus_crigri
ENSVVUG00000006414	PSPC1	83	78.616	ENSCVAG00000007679	-	78	68.483	Cyprinodon_variegatus
ENSVVUG00000006414	PSPC1	99	72.021	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSVVUG00000006414	PSPC1	100	96.632	ENSDNOG00000011078	PSPC1	100	96.558	Dasypus_novemcinctus
ENSVVUG00000006414	PSPC1	100	94.073	ENSDORG00000016050	Pspc1	100	92.543	Dipodomys_ordii
ENSVVUG00000006414	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSVVUG00000006414	PSPC1	84	45.087	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSVVUG00000006414	PSPC1	84	73.313	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSVVUG00000006414	PSPC1	100	98.464	ENSEASG00005000119	PSPC1	100	98.464	Equus_asinus_asinus
ENSVVUG00000006414	PSPC1	100	98.464	ENSECAG00000017286	PSPC1	100	98.464	Equus_caballus
ENSVVUG00000006414	PSPC1	88	82.188	ENSEEUG00000011288	-	100	65.067	Erinaceus_europaeus
ENSVVUG00000006414	PSPC1	99	71.939	ENSELUG00000003746	pspc1	81	79.586	Esox_lucius
ENSVVUG00000006414	PSPC1	100	99.499	ENSFCAG00000027841	PSPC1	100	99.499	Felis_catus
ENSVVUG00000006414	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	99	86.792	Ficedula_albicollis
ENSVVUG00000006414	PSPC1	100	95.202	ENSFDAG00000002617	PSPC1	100	95.202	Fukomys_damarensis
ENSVVUG00000006414	PSPC1	75	82.986	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSVVUG00000006414	PSPC1	99	87.666	ENSGALG00000017142	PSPC1	99	87.838	Gallus_gallus
ENSVVUG00000006414	PSPC1	84	78.154	ENSGAFG00000006327	pspc1	68	77.812	Gambusia_affinis
ENSVVUG00000006414	PSPC1	84	74.074	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSVVUG00000006414	PSPC1	99	86.692	ENSGAGG00000019164	PSPC1	99	87.838	Gopherus_agassizii
ENSVVUG00000006414	PSPC1	86	73.193	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSVVUG00000006414	PSPC1	100	98.964	ENSGGOG00000003414	PSPC1	100	98.662	Gorilla_gorilla
ENSVVUG00000006414	PSPC1	99	70.202	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSVVUG00000006414	PSPC1	100	98.177	ENSHGLG00000018811	PSPC1	100	97.505	Heterocephalus_glaber_female
ENSVVUG00000006414	PSPC1	91	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSVVUG00000006414	PSPC1	84	74.154	ENSHCOG00000013251	pspc1	83	70.053	Hippocampus_comes
ENSVVUG00000006414	PSPC1	99	73.834	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSVVUG00000006414	PSPC1	100	98.705	ENSSTOG00000026833	PSPC1	100	98.279	Ictidomys_tridecemlineatus
ENSVVUG00000006414	PSPC1	100	97.409	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSVVUG00000006414	PSPC1	75	69.204	ENSKMAG00000013525	-	84	54.409	Kryptolebias_marmoratus
ENSVVUG00000006414	PSPC1	94	73.626	ENSLBEG00000004474	pspc1	70	77.744	Labrus_bergylta
ENSVVUG00000006414	PSPC1	99	76.394	ENSLACG00000010762	PSPC1	88	85.129	Latimeria_chalumnae
ENSVVUG00000006414	PSPC1	88	84.382	ENSLOCG00000010832	pspc1	91	84.382	Lepisosteus_oculatus
ENSVVUG00000006414	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSVVUG00000006414	PSPC1	100	98.705	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSVVUG00000006414	PSPC1	100	98.705	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSVVUG00000006414	PSPC1	100	98.705	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSVVUG00000006414	PSPC1	100	100.000	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSVVUG00000006414	PSPC1	84	78.086	ENSMAMG00000004333	pspc1	87	62.260	Mastacembelus_armatus
ENSVVUG00000006414	PSPC1	99	64.000	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSVVUG00000006414	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSVVUG00000006414	PSPC1	100	90.674	ENSMAUG00000021067	Pspc1	99	89.805	Mesocricetus_auratus
ENSVVUG00000006414	PSPC1	100	98.187	ENSMICG00000013970	PSPC1	100	98.088	Microcebus_murinus
ENSVVUG00000006414	PSPC1	100	97.409	ENSMOCG00000006060	Pspc1	100	97.132	Microtus_ochrogaster
ENSVVUG00000006414	PSPC1	91	53.611	ENSMMOG00000004352	pspc1	60	51.479	Mola_mola
ENSVVUG00000006414	PSPC1	100	96.891	ENSMODG00000008029	PSPC1	78	96.082	Monodelphis_domestica
ENSVVUG00000006414	PSPC1	84	77.469	ENSMALG00000008914	pspc1	88	67.591	Monopterus_albus
ENSVVUG00000006414	PSPC1	100	97.416	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.137	Mus_caroli
ENSVVUG00000006414	PSPC1	100	97.416	ENSMUSG00000021938	Pspc1	100	97.328	Mus_musculus
ENSVVUG00000006414	PSPC1	100	97.416	MGP_PahariEiJ_G0030359	Pspc1	100	97.137	Mus_pahari
ENSVVUG00000006414	PSPC1	100	97.158	MGP_SPRETEiJ_G0020232	Pspc1	100	97.137	Mus_spretus
ENSVVUG00000006414	PSPC1	100	99.424	ENSMPUG00000013347	PSPC1	100	99.424	Mustela_putorius_furo
ENSVVUG00000006414	PSPC1	100	96.947	ENSMLUG00000017663	PSPC1	100	96.947	Myotis_lucifugus
ENSVVUG00000006414	PSPC1	100	97.668	ENSNGAG00000011271	Pspc1	100	97.323	Nannospalax_galili
ENSVVUG00000006414	PSPC1	99	64.912	ENSNBRG00000014059	pspc1	92	61.750	Neolamprologus_brichardi
ENSVVUG00000006414	PSPC1	100	98.705	ENSNLEG00000001294	PSPC1	100	98.662	Nomascus_leucogenys
ENSVVUG00000006414	PSPC1	84	93.750	ENSMEUG00000000476	PSPC1	84	92.578	Notamacropus_eugenii
ENSVVUG00000006414	PSPC1	100	86.372	ENSODEG00000007817	-	100	80.076	Octodon_degus
ENSVVUG00000006414	PSPC1	100	88.802	ENSODEG00000019012	-	100	84.820	Octodon_degus
ENSVVUG00000006414	PSPC1	99	70.455	ENSONIG00000012010	pspc1	87	69.068	Oreochromis_niloticus
ENSVVUG00000006414	PSPC1	99	66.580	ENSOANG00000011381	-	99	64.299	Ornithorhynchus_anatinus
ENSVVUG00000006414	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSVVUG00000006414	PSPC1	100	97.927	ENSOCUG00000006153	PSPC1	100	97.897	Oryctolagus_cuniculus
ENSVVUG00000006414	PSPC1	84	79.012	ENSORLG00000004232	-	87	64.389	Oryzias_latipes
ENSVVUG00000006414	PSPC1	84	78.395	ENSORLG00020000578	PSPC1	87	67.021	Oryzias_latipes_hni
ENSVVUG00000006414	PSPC1	84	79.321	ENSORLG00015017480	pspc1	77	72.087	Oryzias_latipes_hsok
ENSVVUG00000006414	PSPC1	55	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSVVUG00000006414	PSPC1	100	98.662	ENSOGAG00000012643	PSPC1	100	98.662	Otolemur_garnettii
ENSVVUG00000006414	PSPC1	100	91.587	ENSOARG00000014163	PSPC1	100	91.587	Ovis_aries
ENSVVUG00000006414	PSPC1	85	99.696	ENSPPAG00000009836	PSPC1	93	99.696	Pan_paniscus
ENSVVUG00000006414	PSPC1	100	99.479	ENSPPRG00000008833	PSPC1	100	99.424	Panthera_pardus
ENSVVUG00000006414	PSPC1	100	83.877	ENSPTIG00000016917	PSPC1	100	83.877	Panthera_tigris_altaica
ENSVVUG00000006414	PSPC1	100	98.964	ENSPTRG00000005677	PSPC1	100	97.964	Pan_troglodytes
ENSVVUG00000006414	PSPC1	100	98.964	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSVVUG00000006414	PSPC1	99	76.104	ENSPKIG00000003578	pspc1	81	77.419	Paramormyrops_kingsleyae
ENSVVUG00000006414	PSPC1	99	86.415	ENSPSIG00000005168	PSPC1	99	87.476	Pelodiscus_sinensis
ENSVVUG00000006414	PSPC1	83	69.018	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSVVUG00000006414	PSPC1	100	97.668	ENSPEMG00000015214	Pspc1	100	97.514	Peromyscus_maniculatus_bairdii
ENSVVUG00000006414	PSPC1	72	44.948	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSVVUG00000006414	PSPC1	99	97.143	ENSPCIG00000017680	PSPC1	100	96.552	Phascolarctos_cinereus
ENSVVUG00000006414	PSPC1	96	71.540	ENSPFOG00000003362	pspc1	88	68.076	Poecilia_formosa
ENSVVUG00000006414	PSPC1	99	69.773	ENSPLAG00000011540	pspc1	87	68.076	Poecilia_latipinna
ENSVVUG00000006414	PSPC1	77	68.687	ENSPLAG00000004407	-	51	60.976	Poecilia_latipinna
ENSVVUG00000006414	PSPC1	99	69.270	ENSPMEG00000008322	pspc1	87	67.653	Poecilia_mexicana
ENSVVUG00000006414	PSPC1	77	68.919	ENSPMEG00000001025	-	51	60.811	Poecilia_mexicana
ENSVVUG00000006414	PSPC1	99	69.018	ENSPREG00000007786	pspc1	87	67.653	Poecilia_reticulata
ENSVVUG00000006414	PSPC1	100	98.705	ENSPPYG00000005186	PSPC1	100	98.279	Pongo_abelii
ENSVVUG00000006414	PSPC1	74	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSVVUG00000006414	PSPC1	100	98.446	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSVVUG00000006414	PSPC1	100	97.656	ENSPVAG00000005036	PSPC1	100	95.010	Pteropus_vampyrus
ENSVVUG00000006414	PSPC1	99	64.250	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSVVUG00000006414	PSPC1	99	73.385	ENSPNAG00000016511	pspc1	89	72.611	Pygocentrus_nattereri
ENSVVUG00000006414	PSPC1	100	97.668	ENSRNOG00000020782	Pspc1	100	97.323	Rattus_norvegicus
ENSVVUG00000006414	PSPC1	93	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSVVUG00000006414	PSPC1	100	98.705	ENSRROG00000036334	PSPC1	100	98.662	Rhinopithecus_roxellana
ENSVVUG00000006414	PSPC1	70	98.141	ENSSBOG00000028172	PSPC1	91	95.307	Saimiri_boliviensis_boliviensis
ENSVVUG00000006414	PSPC1	100	90.476	ENSSHAG00000004696	PSPC1	100	89.905	Sarcophilus_harrisii
ENSVVUG00000006414	PSPC1	85	85.583	ENSSFOG00015001395	pspc1	90	78.241	Scleropages_formosus
ENSVVUG00000006414	PSPC1	89	75.072	ENSSMAG00000001761	pspc1	84	76.036	Scophthalmus_maximus
ENSVVUG00000006414	PSPC1	84	81.173	ENSSDUG00000010651	pspc1	76	74.186	Seriola_dumerili
ENSVVUG00000006414	PSPC1	84	74.383	ENSSLDG00000004284	pspc1	81	62.269	Seriola_lalandi_dorsalis
ENSVVUG00000006414	PSPC1	100	90.403	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSVVUG00000006414	PSPC1	83	66.044	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSVVUG00000006414	PSPC1	99	76.276	ENSSPUG00000008550	PSPC1	99	75.385	Sphenodon_punctatus
ENSVVUG00000006414	PSPC1	88	78.466	ENSSPAG00000001921	pspc1	77	73.256	Stegastes_partitus
ENSVVUG00000006414	PSPC1	100	97.318	ENSSSCG00000009569	PSPC1	100	97.318	Sus_scrofa
ENSVVUG00000006414	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSVVUG00000006414	PSPC1	84	71.296	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSVVUG00000006414	PSPC1	84	73.148	ENSTNIG00000010358	pspc1	84	66.746	Tetraodon_nigroviridis
ENSVVUG00000006414	PSPC1	100	86.719	ENSTBEG00000002361	PSPC1	100	75.816	Tupaia_belangeri
ENSVVUG00000006414	PSPC1	100	97.313	ENSTTRG00000003343	PSPC1	100	97.313	Tursiops_truncatus
ENSVVUG00000006414	PSPC1	91	99.427	ENSUAMG00000012309	PSPC1	100	99.427	Ursus_americanus
ENSVVUG00000006414	PSPC1	93	99.384	ENSUMAG00000013993	PSPC1	100	99.384	Ursus_maritimus
ENSVVUG00000006414	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSVVUG00000006414	PSPC1	99	68.434	ENSXCOG00000017438	pspc1	78	76.900	Xiphophorus_couchianus
ENSVVUG00000006414	PSPC1	99	68.687	ENSXMAG00000007929	pspc1	78	77.204	Xiphophorus_maculatus