EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000006457 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 131871 bases
Position: chrNBDQ01000114.1:6388306-6520176
Accession: 112932600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000008689	R3H	PF01424.22	2.3e-11	1	1
ENSVVUP00000008662	R3H	PF01424.22	2.5e-11	1	1
ENSVVUP00000008645	R3H	PF01424.22	2.6e-11	1	1
ENSVVUP00000008714	R3H	PF01424.22	2.7e-11	1	1
ENSVVUP00000008616	R3H	PF01424.22	2.9e-11	1	1
ENSVVUP00000008631	R3H	PF01424.22	1.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000011350	R3HDM1-201	3837	-	ENSVVUP00000008616	1195 (aa)	-	-
ENSVVUT00000011415	R3HDM1-204	4141	-	ENSVVUP00000008662	1057 (aa)	-	-
ENSVVUT00000011447	R3HDM1-205	3988	-	ENSVVUP00000008689	1006 (aa)	-	-
ENSVVUT00000011377	R3HDM1-202	3603	-	ENSVVUP00000008631	1117 (aa)	-	-
ENSVVUT00000011394	R3HDM1-203	4243	-	ENSVVUP00000008645	1091 (aa)	XP_025871348	UPI000DF6EDBA
ENSVVUT00000011476	R3HDM1-206	3654	-	ENSVVUP00000008714	1134 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000006457's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000006457's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000006457	R3HDM1	68	51.792	ENSVVUG00000021975	ARPP21	88	52.308
ENSVVUG00000006457	R3HDM1	98	49.412	ENSVVUG00000018014	R3HDM2	92	59.756

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000006457	R3HDM1	100	92.870	ENSG00000048991	R3HDM1	100	97.790	Homo_sapiens
ENSVVUG00000006457	R3HDM1	88	63.200	ENSAPOG00000020850	r3hdm1	92	63.200	Acanthochromis_polyacanthus
ENSVVUG00000006457	R3HDM1	100	96.039	ENSAMEG00000014886	R3HDM1	100	96.039	Ailuropoda_melanoleuca
ENSVVUG00000006457	R3HDM1	88	57.843	ENSAOCG00000005192	r3hdm1	95	57.843	Amphiprion_ocellaris
ENSVVUG00000006457	R3HDM1	88	62.933	ENSAPEG00000016108	r3hdm1	95	62.933	Amphiprion_percula
ENSVVUG00000006457	R3HDM1	88	63.172	ENSATEG00000000232	r3hdm1	99	48.328	Anabas_testudineus
ENSVVUG00000006457	R3HDM1	100	77.836	ENSAPLG00000015231	R3HDM1	100	77.924	Anas_platyrhynchos
ENSVVUG00000006457	R3HDM1	100	79.685	ENSACAG00000001676	R3HDM1	100	79.860	Anolis_carolinensis
ENSVVUG00000006457	R3HDM1	100	92.165	ENSANAG00000035334	R3HDM1	100	96.961	Aotus_nancymaae
ENSVVUG00000006457	R3HDM1	88	61.867	ENSACLG00000027282	r3hdm1	94	61.867	Astatotilapia_calliptera
ENSVVUG00000006457	R3HDM1	93	72.902	ENSAMXG00000012861	R3HDM1	100	72.837	Astyanax_mexicanus
ENSVVUG00000006457	R3HDM1	61	39.859	ENSAMXG00000020587	arpp21	85	39.968	Astyanax_mexicanus
ENSVVUG00000006457	R3HDM1	87	74.603	ENSAMXG00000003536	r3hdm1	89	74.522	Astyanax_mexicanus
ENSVVUG00000006457	R3HDM1	100	96.039	ENSBTAG00000013302	R3HDM1	100	96.039	Bos_taurus
ENSVVUG00000006457	R3HDM1	100	92.328	ENSCJAG00000011718	R3HDM1	100	96.961	Callithrix_jacchus
ENSVVUG00000006457	R3HDM1	100	96.743	ENSCAFG00000005075	R3HDM1	100	96.743	Canis_familiaris
ENSVVUG00000006457	R3HDM1	100	99.736	ENSCAFG00020016119	R3HDM1	100	99.736	Canis_lupus_dingo
ENSVVUG00000006457	R3HDM1	100	95.863	ENSCHIG00000020851	R3HDM1	100	95.863	Capra_hircus
ENSVVUG00000006457	R3HDM1	100	92.970	ENSCPOG00000012784	R3HDM1	100	92.970	Cavia_porcellus
ENSVVUG00000006457	R3HDM1	100	91.894	ENSCCAG00000027199	R3HDM1	100	96.133	Cebus_capucinus
ENSVVUG00000006457	R3HDM1	100	94.718	ENSCATG00000023642	R3HDM1	100	97.238	Cercocebus_atys
ENSVVUG00000006457	R3HDM1	100	92.179	ENSCLAG00000007962	R3HDM1	100	94.077	Chinchilla_lanigera
ENSVVUG00000006457	R3HDM1	100	94.630	ENSCSAG00000016356	R3HDM1	100	94.630	Chlorocebus_sabaeus
ENSVVUG00000006457	R3HDM1	82	88.550	ENSCHOG00000013638	R3HDM1	91	80.577	Choloepus_hoffmanni
ENSVVUG00000006457	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSVVUG00000006457	R3HDM1	100	91.725	ENSCANG00000034748	R3HDM1	100	96.961	Colobus_angolensis_palliatus
ENSVVUG00000006457	R3HDM1	99	92.145	ENSCGRG00001012357	R3hdm1	97	92.145	Cricetulus_griseus_chok1gshd
ENSVVUG00000006457	R3HDM1	100	91.909	ENSCGRG00000012080	R3hdm1	100	95.470	Cricetulus_griseus_crigri
ENSVVUG00000006457	R3HDM1	81	64.918	ENSCSEG00000008944	r3hdm1	91	57.568	Cynoglossus_semilaevis
ENSVVUG00000006457	R3HDM1	88	60.800	ENSCVAG00000007582	r3hdm1	91	60.800	Cyprinodon_variegatus
ENSVVUG00000006457	R3HDM1	63	34.855	ENSDARG00000061081	arpp21	62	44.836	Danio_rerio
ENSVVUG00000006457	R3HDM1	100	89.405	ENSDNOG00000000771	R3HDM1	100	89.405	Dasypus_novemcinctus
ENSVVUG00000006457	R3HDM1	93	92.683	ENSETEG00000013606	R3HDM1	100	80.705	Echinops_telfairi
ENSVVUG00000006457	R3HDM1	66	39.747	ENSEBUG00000014746	arpp21	97	43.390	Eptatretus_burgeri
ENSVVUG00000006457	R3HDM1	100	97.621	ENSEASG00005007392	R3HDM1	100	99.015	Equus_asinus_asinus
ENSVVUG00000006457	R3HDM1	100	97.621	ENSECAG00000019114	R3HDM1	100	99.015	Equus_caballus
ENSVVUG00000006457	R3HDM1	88	88.192	ENSEEUG00000012589	R3HDM1	91	86.691	Erinaceus_europaeus
ENSVVUG00000006457	R3HDM1	83	77.670	ENSELUG00000004909	R3HDM1	99	53.989	Esox_lucius
ENSVVUG00000006457	R3HDM1	91	52.145	ENSELUG00000014413	r3hdm1	100	50.350	Esox_lucius
ENSVVUG00000006457	R3HDM1	100	98.680	ENSFCAG00000027113	R3HDM1	100	98.680	Felis_catus
ENSVVUG00000006457	R3HDM1	75	75.641	ENSFALG00000013731	R3HDM1	93	57.774	Ficedula_albicollis
ENSVVUG00000006457	R3HDM1	100	92.707	ENSFDAG00000016478	R3HDM1	100	94.425	Fukomys_damarensis
ENSVVUG00000006457	R3HDM1	88	56.863	ENSFHEG00000018713	r3hdm1	100	47.871	Fundulus_heteroclitus
ENSVVUG00000006457	R3HDM1	61	69.565	ENSGMOG00000006042	-	74	68.750	Gadus_morhua
ENSVVUG00000006457	R3HDM1	100	74.695	ENSGALG00000012246	R3HDM1	100	85.342	Gallus_gallus
ENSVVUG00000006457	R3HDM1	88	47.848	ENSGAFG00000006203	r3hdm1	95	60.582	Gambusia_affinis
ENSVVUG00000006457	R3HDM1	86	67.949	ENSGACG00000014925	r3hdm1	92	67.949	Gasterosteus_aculeatus
ENSVVUG00000006457	R3HDM1	99	83.380	ENSGAGG00000007840	R3HDM1	96	83.709	Gopherus_agassizii
ENSVVUG00000006457	R3HDM1	100	92.518	ENSGGOG00000008156	R3HDM1	100	97.790	Gorilla_gorilla
ENSVVUG00000006457	R3HDM1	100	92.863	ENSHGLG00000015718	R3HDM1	100	94.425	Heterocephalus_glaber_female
ENSVVUG00000006457	R3HDM1	100	93.040	ENSHGLG00100003184	-	100	94.077	Heterocephalus_glaber_male
ENSVVUG00000006457	R3HDM1	100	73.346	ENSHGLG00100015374	-	100	73.346	Heterocephalus_glaber_male
ENSVVUG00000006457	R3HDM1	87	59.030	ENSHCOG00000013366	r3hdm1	91	59.838	Hippocampus_comes
ENSVVUG00000006457	R3HDM1	82	66.587	ENSIPUG00000001676	R3HDM1	99	66.507	Ictalurus_punctatus
ENSVVUG00000006457	R3HDM1	93	61.399	ENSIPUG00000013629	r3hdm1	95	69.375	Ictalurus_punctatus
ENSVVUG00000006457	R3HDM1	54	38.287	ENSIPUG00000020552	arpp21	86	33.046	Ictalurus_punctatus
ENSVVUG00000006457	R3HDM1	100	95.075	ENSSTOG00000007572	R3HDM1	99	96.863	Ictidomys_tridecemlineatus
ENSVVUG00000006457	R3HDM1	95	74.763	ENSLACG00000005334	R3HDM1	100	74.319	Latimeria_chalumnae
ENSVVUG00000006457	R3HDM1	100	69.734	ENSLOCG00000001641	r3hdm1	100	66.264	Lepisosteus_oculatus
ENSVVUG00000006457	R3HDM1	100	95.507	ENSLAFG00000009065	R3HDM1	100	95.507	Loxodonta_africana
ENSVVUG00000006457	R3HDM1	100	91.982	ENSMFAG00000030331	R3HDM1	100	97.790	Macaca_fascicularis
ENSVVUG00000006457	R3HDM1	100	91.894	ENSMMUG00000009844	R3HDM1	100	97.790	Macaca_mulatta
ENSVVUG00000006457	R3HDM1	100	91.806	ENSMNEG00000027793	R3HDM1	100	97.790	Macaca_nemestrina
ENSVVUG00000006457	R3HDM1	100	92.070	ENSMLEG00000043189	R3HDM1	100	97.790	Mandrillus_leucophaeus
ENSVVUG00000006457	R3HDM1	88	62.198	ENSMAMG00000004532	r3hdm1	91	62.198	Mastacembelus_armatus
ENSVVUG00000006457	R3HDM1	88	61.867	ENSMZEG00005003157	r3hdm1	95	61.867	Maylandia_zebra
ENSVVUG00000006457	R3HDM1	100	76.997	ENSMGAG00000012461	R3HDM1	100	76.910	Meleagris_gallopavo
ENSVVUG00000006457	R3HDM1	100	91.667	ENSMAUG00000010315	R3hdm1	100	95.819	Mesocricetus_auratus
ENSVVUG00000006457	R3HDM1	100	91.652	ENSMICG00000005900	-	100	96.961	Microcebus_murinus
ENSVVUG00000006457	R3HDM1	95	89.885	ENSMICG00000042655	-	100	96.685	Microcebus_murinus
ENSVVUG00000006457	R3HDM1	90	81.939	ENSMODG00000000923	R3HDM1	97	81.844	Monodelphis_domestica
ENSVVUG00000006457	R3HDM1	99	57.816	ENSMALG00000009000	r3hdm1	92	57.816	Monopterus_albus
ENSVVUG00000006457	R3HDM1	100	91.454	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.774	Mus_caroli
ENSVVUG00000006457	R3HDM1	100	91.542	ENSMUSG00000056211	R3hdm1	100	94.774	Mus_musculus
ENSVVUG00000006457	R3HDM1	100	91.366	MGP_PahariEiJ_G0027779	R3hdm1	100	94.561	Mus_pahari
ENSVVUG00000006457	R3HDM1	100	91.718	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.774	Mus_spretus
ENSVVUG00000006457	R3HDM1	100	95.771	ENSMPUG00000002412	R3HDM1	100	95.771	Mustela_putorius_furo
ENSVVUG00000006457	R3HDM1	100	92.801	ENSMLUG00000013824	R3HDM1	100	92.801	Myotis_lucifugus
ENSVVUG00000006457	R3HDM1	100	91.894	ENSNLEG00000008622	R3HDM1	100	97.238	Nomascus_leucogenys
ENSVVUG00000006457	R3HDM1	89	71.626	ENSMEUG00000011784	R3HDM1	100	71.330	Notamacropus_eugenii
ENSVVUG00000006457	R3HDM1	100	92.423	ENSODEG00000008607	R3HDM1	100	95.470	Octodon_degus
ENSVVUG00000006457	R3HDM1	94	48.351	ENSONIG00000012017	r3hdm1	91	66.563	Oreochromis_niloticus
ENSVVUG00000006457	R3HDM1	100	80.049	ENSOANG00000007987	R3HDM1	100	79.842	Ornithorhynchus_anatinus
ENSVVUG00000006457	R3HDM1	90	91.052	ENSOCUG00000017366	R3HDM1	98	91.052	Oryctolagus_cuniculus
ENSVVUG00000006457	R3HDM1	88	61.067	ENSORLG00000004297	r3hdm1	91	61.067	Oryzias_latipes
ENSVVUG00000006457	R3HDM1	89	61.170	ENSORLG00015017355	r3hdm1	91	61.170	Oryzias_latipes_hsok
ENSVVUG00000006457	R3HDM1	100	91.542	ENSOGAG00000003136	R3HDM1	100	91.542	Otolemur_garnettii
ENSVVUG00000006457	R3HDM1	100	92.863	ENSOARG00000010788	R3HDM1	100	92.775	Ovis_aries
ENSVVUG00000006457	R3HDM1	100	92.707	ENSPPAG00000027858	R3HDM1	100	97.790	Pan_paniscus
ENSVVUG00000006457	R3HDM1	100	95.507	ENSPPRG00000002626	R3HDM1	100	99.171	Panthera_pardus
ENSVVUG00000006457	R3HDM1	100	95.507	ENSPTIG00000016581	R3HDM1	100	99.448	Panthera_tigris_altaica
ENSVVUG00000006457	R3HDM1	100	92.707	ENSPTRG00000012494	R3HDM1	100	97.790	Pan_troglodytes
ENSVVUG00000006457	R3HDM1	100	91.982	ENSPANG00000026448	R3HDM1	100	97.790	Papio_anubis
ENSVVUG00000006457	R3HDM1	94	76.358	ENSPKIG00000004328	r3hdm1	91	76.508	Paramormyrops_kingsleyae
ENSVVUG00000006457	R3HDM1	100	76.538	ENSPSIG00000012915	R3HDM1	100	76.714	Pelodiscus_sinensis
ENSVVUG00000006457	R3HDM1	100	92.335	ENSPEMG00000015187	R3hdm1	100	95.470	Peromyscus_maniculatus_bairdii
ENSVVUG00000006457	R3HDM1	91	54.960	ENSPMAG00000003369	-	99	39.496	Petromyzon_marinus
ENSVVUG00000006457	R3HDM1	100	90.934	ENSPCIG00000002491	R3HDM1	100	90.931	Phascolarctos_cinereus
ENSVVUG00000006457	R3HDM1	88	55.231	ENSPFOG00000015036	r3hdm1	94	55.231	Poecilia_formosa
ENSVVUG00000006457	R3HDM1	88	59.682	ENSPLAG00000018042	r3hdm1	91	59.682	Poecilia_latipinna
ENSVVUG00000006457	R3HDM1	88	48.597	ENSPMEG00000023947	r3hdm1	91	59.682	Poecilia_mexicana
ENSVVUG00000006457	R3HDM1	81	68.285	ENSPREG00000007902	r3hdm1	94	59.788	Poecilia_reticulata
ENSVVUG00000006457	R3HDM1	100	90.757	ENSPPYG00000012815	R3HDM1	100	90.757	Pongo_abelii
ENSVVUG00000006457	R3HDM1	98	82.927	ENSPCAG00000006208	R3HDM1	100	80.000	Procavia_capensis
ENSVVUG00000006457	R3HDM1	100	90.683	ENSPCOG00000012698	R3HDM1	100	94.137	Propithecus_coquereli
ENSVVUG00000006457	R3HDM1	100	84.169	ENSPVAG00000006098	R3HDM1	100	84.169	Pteropus_vampyrus
ENSVVUG00000006457	R3HDM1	87	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSVVUG00000006457	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	89	74.522	Pygocentrus_nattereri
ENSVVUG00000006457	R3HDM1	54	58.400	ENSPNAG00000004162	arpp21	57	58.400	Pygocentrus_nattereri
ENSVVUG00000006457	R3HDM1	100	91.101	ENSRNOG00000004099	R3hdm1	100	91.101	Rattus_norvegicus
ENSVVUG00000006457	R3HDM1	100	89.886	ENSRBIG00000033317	R3HDM1	100	98.893	Rhinopithecus_bieti
ENSVVUG00000006457	R3HDM1	100	94.523	ENSRROG00000034534	R3HDM1	100	97.514	Rhinopithecus_roxellana
ENSVVUG00000006457	R3HDM1	100	91.718	ENSSBOG00000020389	R3HDM1	100	96.409	Saimiri_boliviensis_boliviensis
ENSVVUG00000006457	R3HDM1	100	85.122	ENSSHAG00000016999	R3HDM1	100	85.028	Sarcophilus_harrisii
ENSVVUG00000006457	R3HDM1	93	71.117	ENSSFOG00015014134	r3hdm1	100	71.046	Scleropages_formosus
ENSVVUG00000006457	R3HDM1	100	55.134	ENSSFOG00015019851	-	95	63.765	Scleropages_formosus
ENSVVUG00000006457	R3HDM1	99	45.179	ENSSMAG00000001669	r3hdm1	99	45.063	Scophthalmus_maximus
ENSVVUG00000006457	R3HDM1	88	48.064	ENSSDUG00000010749	r3hdm1	99	48.554	Seriola_dumerili
ENSVVUG00000006457	R3HDM1	99	46.296	ENSSLDG00000004499	r3hdm1	99	46.706	Seriola_lalandi_dorsalis
ENSVVUG00000006457	R3HDM1	71	80.217	ENSSARG00000000352	-	69	83.721	Sorex_araneus
ENSVVUG00000006457	R3HDM1	100	78.753	ENSSPUG00000004167	R3HDM1	100	78.490	Sphenodon_punctatus
ENSVVUG00000006457	R3HDM1	88	63.200	ENSSPAG00000004648	r3hdm1	91	63.200	Stegastes_partitus
ENSVVUG00000006457	R3HDM1	100	97.359	ENSSSCG00000015692	R3HDM1	100	97.359	Sus_scrofa
ENSVVUG00000006457	R3HDM1	100	71.891	ENSTGUG00000011750	R3HDM1	100	71.779	Taeniopygia_guttata
ENSVVUG00000006457	R3HDM1	88	57.841	ENSTRUG00000011654	r3hdm1	91	57.841	Takifugu_rubripes
ENSVVUG00000006457	R3HDM1	83	47.155	ENSTNIG00000010362	r3hdm1	96	45.178	Tetraodon_nigroviridis
ENSVVUG00000006457	R3HDM1	100	88.424	ENSTTRG00000003935	R3HDM1	100	88.203	Tursiops_truncatus
ENSVVUG00000006457	R3HDM1	70	96.356	ENSUAMG00000024806	R3HDM1	99	96.679	Ursus_americanus
ENSVVUG00000006457	R3HDM1	100	98.110	ENSUMAG00000005552	R3HDM1	100	99.724	Ursus_maritimus
ENSVVUG00000006457	R3HDM1	97	98.246	ENSVPAG00000007333	R3HDM1	93	98.246	Vicugna_pacos
ENSVVUG00000006457	R3HDM1	89	66.868	ENSXETG00000019330	r3hdm1	100	66.667	Xenopus_tropicalis
ENSVVUG00000006457	R3HDM1	70	50.575	ENSXCOG00000017448	r3hdm1	94	50.000	Xiphophorus_couchianus
ENSVVUG00000006457	R3HDM1	81	67.961	ENSXMAG00000007885	r3hdm1	82	67.961	Xiphophorus_maculatus