EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVVUG00000007226 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Plus strand
Length: 416734 bases
Position: chrNBDQ01000084.1:3253418-3670151
Accession: 112928900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000009770	TUDOR	PF00567.24	8.5e-28	1	1
ENSVVUP00000009770	SNase	PF00565.17	1.4e-68	1	5
ENSVVUP00000009770	SNase	PF00565.17	1.4e-68	2	5
ENSVVUP00000009770	SNase	PF00565.17	1.4e-68	3	5
ENSVVUP00000009770	SNase	PF00565.17	1.4e-68	4	5
ENSVVUP00000009770	SNase	PF00565.17	1.4e-68	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000012823	SND1-201	3272	XM_026010782	ENSVVUP00000009770	910 (aa)	XP_025866567	UPI000DF713CD

Gene Model

Click here to download ENSVVUG00000007226's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000007226's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000007226	SND1	100	98.791	ENSG00000197157	SND1	100	98.791	Homo_sapiens
ENSVVUG00000007226	SND1	100	83.882	ENSAPOG00000017599	snd1	100	83.882	Acanthochromis_polyacanthus
ENSVVUG00000007226	SND1	100	99.232	ENSAMEG00000004664	SND1	94	99.232	Ailuropoda_melanoleuca
ENSVVUG00000007226	SND1	98	82.083	ENSACIG00000003551	snd1	100	81.120	Amphilophus_citrinellus
ENSVVUG00000007226	SND1	100	83.662	ENSAOCG00000014166	snd1	100	83.662	Amphiprion_ocellaris
ENSVVUG00000007226	SND1	100	83.662	ENSAPEG00000007067	snd1	100	83.662	Amphiprion_percula
ENSVVUG00000007226	SND1	98	83.128	ENSATEG00000018475	snd1	89	83.128	Anabas_testudineus
ENSVVUG00000007226	SND1	100	99.011	ENSANAG00000034463	SND1	100	99.011	Aotus_nancymaae
ENSVVUG00000007226	SND1	100	83.333	ENSACLG00000022897	snd1	100	83.333	Astatotilapia_calliptera
ENSVVUG00000007226	SND1	99	84.268	ENSAMXG00000016318	snd1	99	84.268	Astyanax_mexicanus
ENSVVUG00000007226	SND1	100	98.571	ENSBTAG00000010692	SND1	100	98.571	Bos_taurus
ENSVVUG00000007226	SND1	98	46.601	WBGene00006626	tsn-1	98	46.762	Caenorhabditis_elegans
ENSVVUG00000007226	SND1	100	98.791	ENSCJAG00000017668	SND1	100	98.791	Callithrix_jacchus
ENSVVUG00000007226	SND1	100	99.780	ENSCAFG00000001700	SND1	100	99.780	Canis_familiaris
ENSVVUG00000007226	SND1	100	99.780	ENSCAFG00020021639	SND1	100	99.780	Canis_lupus_dingo
ENSVVUG00000007226	SND1	100	98.901	ENSCHIG00000023390	SND1	100	98.901	Capra_hircus
ENSVVUG00000007226	SND1	73	98.944	ENSTSYG00000004979	SND1	96	98.944	Carlito_syrichta
ENSVVUG00000007226	SND1	99	84.667	ENSCAPG00000010677	SND1	98	84.333	Cavia_aperea
ENSVVUG00000007226	SND1	100	97.802	ENSCPOG00000006251	SND1	100	97.802	Cavia_porcellus
ENSVVUG00000007226	SND1	100	99.121	ENSCCAG00000036847	SND1	100	99.121	Cebus_capucinus
ENSVVUG00000007226	SND1	100	99.011	ENSCATG00000035214	SND1	100	99.011	Cercocebus_atys
ENSVVUG00000007226	SND1	100	98.022	ENSCLAG00000011796	SND1	100	98.022	Chinchilla_lanigera
ENSVVUG00000007226	SND1	100	99.011	ENSCSAG00000010182	SND1	100	99.011	Chlorocebus_sabaeus
ENSVVUG00000007226	SND1	77	91.176	ENSCHOG00000002218	SND1	86	91.176	Choloepus_hoffmanni
ENSVVUG00000007226	SND1	100	92.088	ENSCPBG00000018094	SND1	100	92.088	Chrysemys_picta_bellii
ENSVVUG00000007226	SND1	98	56.811	ENSCING00000000524	-	99	55.700	Ciona_intestinalis
ENSVVUG00000007226	SND1	99	57.814	ENSCSAVG00000008807	-	99	57.377	Ciona_savignyi
ENSVVUG00000007226	SND1	100	99.011	ENSCANG00000035119	SND1	100	99.011	Colobus_angolensis_palliatus
ENSVVUG00000007226	SND1	100	97.033	ENSCGRG00001022514	Snd1	100	97.033	Cricetulus_griseus_chok1gshd
ENSVVUG00000007226	SND1	97	97.172	ENSCGRG00000012277	Snd1	99	97.172	Cricetulus_griseus_crigri
ENSVVUG00000007226	SND1	98	84.228	ENSCSEG00000008661	snd1	98	84.228	Cynoglossus_semilaevis
ENSVVUG00000007226	SND1	100	83.991	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSVVUG00000007226	SND1	100	84.447	ENSDARG00000006766	snd1	99	85.965	Danio_rerio
ENSVVUG00000007226	SND1	97	96.054	ENSDNOG00000006795	SND1	100	96.054	Dasypus_novemcinctus
ENSVVUG00000007226	SND1	100	98.462	ENSDORG00000000336	Snd1	100	98.462	Dipodomys_ordii
ENSVVUG00000007226	SND1	98	50.595	FBgn0035121	Tudor-SN	99	50.000	Drosophila_melanogaster
ENSVVUG00000007226	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSVVUG00000007226	SND1	60	66.142	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSVVUG00000007226	SND1	100	97.408	ENSEASG00005008513	SND1	100	97.408	Equus_asinus_asinus
ENSVVUG00000007226	SND1	100	99.011	ENSECAG00000011451	SND1	100	99.011	Equus_caballus
ENSVVUG00000007226	SND1	100	87.033	ENSEEUG00000014737	SND1	100	87.033	Erinaceus_europaeus
ENSVVUG00000007226	SND1	99	82.237	ENSELUG00000001805	snd1	96	82.237	Esox_lucius
ENSVVUG00000007226	SND1	100	99.231	ENSFCAG00000008289	SND1	100	99.231	Felis_catus
ENSVVUG00000007226	SND1	100	98.132	ENSFDAG00000015881	SND1	100	98.132	Fukomys_damarensis
ENSVVUG00000007226	SND1	99	82.093	ENSFHEG00000004093	snd1	99	83.812	Fundulus_heteroclitus
ENSVVUG00000007226	SND1	64	74.859	ENSGMOG00000018932	snd1	66	74.859	Gadus_morhua
ENSVVUG00000007226	SND1	100	84.320	ENSGAFG00000008421	snd1	100	84.320	Gambusia_affinis
ENSVVUG00000007226	SND1	100	53.855	ENSGACG00000019793	snd1	100	53.855	Gasterosteus_aculeatus
ENSVVUG00000007226	SND1	100	99.011	ENSGGOG00000009614	SND1	100	99.011	Gorilla_gorilla
ENSVVUG00000007226	SND1	99	83.370	ENSHBUG00000019135	snd1	99	83.370	Haplochromis_burtoni
ENSVVUG00000007226	SND1	100	97.802	ENSHGLG00000003618	SND1	100	97.802	Heterocephalus_glaber_female
ENSVVUG00000007226	SND1	99	97.348	ENSHGLG00100012449	SND1	100	97.348	Heterocephalus_glaber_male
ENSVVUG00000007226	SND1	100	83.004	ENSHCOG00000005266	snd1	100	83.004	Hippocampus_comes
ENSVVUG00000007226	SND1	100	82.713	ENSIPUG00000013279	snd1	100	82.713	Ictalurus_punctatus
ENSVVUG00000007226	SND1	100	98.571	ENSSTOG00000002140	SND1	100	98.571	Ictidomys_tridecemlineatus
ENSVVUG00000007226	SND1	100	98.681	ENSJJAG00000009561	Snd1	100	98.681	Jaculus_jaculus
ENSVVUG00000007226	SND1	100	84.211	ENSKMAG00000016997	snd1	100	84.211	Kryptolebias_marmoratus
ENSVVUG00000007226	SND1	100	84.564	ENSLBEG00000013563	snd1	100	82.566	Labrus_bergylta
ENSVVUG00000007226	SND1	99	85.557	ENSLOCG00000015537	snd1	100	84.799	Lepisosteus_oculatus
ENSVVUG00000007226	SND1	100	98.132	ENSLAFG00000009696	SND1	100	98.132	Loxodonta_africana
ENSVVUG00000007226	SND1	100	99.011	ENSMFAG00000038114	SND1	100	99.011	Macaca_fascicularis
ENSVVUG00000007226	SND1	100	99.011	ENSMMUG00000015432	SND1	100	99.011	Macaca_mulatta
ENSVVUG00000007226	SND1	100	99.011	ENSMNEG00000039808	SND1	100	99.096	Macaca_nemestrina
ENSVVUG00000007226	SND1	100	99.121	ENSMLEG00000029040	SND1	100	99.209	Mandrillus_leucophaeus
ENSVVUG00000007226	SND1	100	83.443	ENSMAMG00000011739	snd1	100	83.443	Mastacembelus_armatus
ENSVVUG00000007226	SND1	100	83.333	ENSMZEG00005005681	snd1	100	83.333	Maylandia_zebra
ENSVVUG00000007226	SND1	100	98.791	ENSMICG00000000097	SND1	100	98.791	Microcebus_murinus
ENSVVUG00000007226	SND1	100	97.912	ENSMOCG00000005040	Snd1	100	97.912	Microtus_ochrogaster
ENSVVUG00000007226	SND1	100	83.443	ENSMMOG00000001795	snd1	100	83.443	Mola_mola
ENSVVUG00000007226	SND1	99	95.987	ENSMODG00000015182	SND1	100	95.934	Monodelphis_domestica
ENSVVUG00000007226	SND1	100	83.333	ENSMALG00000012071	snd1	100	83.333	Monopterus_albus
ENSVVUG00000007226	SND1	100	97.473	MGP_CAROLIEiJ_G0028159	Snd1	100	97.473	Mus_caroli
ENSVVUG00000007226	SND1	100	97.253	ENSMUSG00000001424	Snd1	100	97.253	Mus_musculus
ENSVVUG00000007226	SND1	100	97.473	MGP_PahariEiJ_G0021917	Snd1	100	97.808	Mus_pahari
ENSVVUG00000007226	SND1	100	97.473	MGP_SPRETEiJ_G0029159	Snd1	100	97.473	Mus_spretus
ENSVVUG00000007226	SND1	100	98.571	ENSMPUG00000006545	SND1	100	98.571	Mustela_putorius_furo
ENSVVUG00000007226	SND1	97	97.207	ENSMLUG00000017130	SND1	99	97.207	Myotis_lucifugus
ENSVVUG00000007226	SND1	100	97.802	ENSNGAG00000011186	Snd1	100	97.802	Nannospalax_galili
ENSVVUG00000007226	SND1	100	83.224	ENSNBRG00000006681	snd1	100	83.224	Neolamprologus_brichardi
ENSVVUG00000007226	SND1	100	98.901	ENSNLEG00000012263	SND1	100	99.096	Nomascus_leucogenys
ENSVVUG00000007226	SND1	91	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSVVUG00000007226	SND1	100	98.242	ENSODEG00000011502	SND1	100	98.242	Octodon_degus
ENSVVUG00000007226	SND1	100	83.224	ENSONIG00000011481	snd1	97	83.224	Oreochromis_niloticus
ENSVVUG00000007226	SND1	98	94.595	ENSOANG00000000817	SND1	99	93.392	Ornithorhynchus_anatinus
ENSVVUG00000007226	SND1	100	97.363	ENSOCUG00000001620	SND1	100	97.363	Oryctolagus_cuniculus
ENSVVUG00000007226	SND1	98	83.911	ENSORLG00000015201	snd1	100	82.895	Oryzias_latipes
ENSVVUG00000007226	SND1	98	84.022	ENSORLG00020013991	snd1	100	83.004	Oryzias_latipes_hni
ENSVVUG00000007226	SND1	98	84.022	ENSORLG00015012436	snd1	100	83.004	Oryzias_latipes_hsok
ENSVVUG00000007226	SND1	100	83.114	ENSOMEG00000006406	snd1	99	83.114	Oryzias_melastigma
ENSVVUG00000007226	SND1	100	98.575	ENSOGAG00000013356	SND1	94	98.575	Otolemur_garnettii
ENSVVUG00000007226	SND1	97	96.158	ENSOARG00000002149	SND1	100	96.158	Ovis_aries
ENSVVUG00000007226	SND1	100	98.901	ENSPPAG00000042947	SND1	100	98.901	Pan_paniscus
ENSVVUG00000007226	SND1	100	99.231	ENSPPRG00000004494	SND1	100	99.231	Panthera_pardus
ENSVVUG00000007226	SND1	100	99.121	ENSPTIG00000014214	SND1	100	99.121	Panthera_tigris_altaica
ENSVVUG00000007226	SND1	100	98.901	ENSPTRG00000023911	SND1	100	98.901	Pan_troglodytes
ENSVVUG00000007226	SND1	97	99.095	ENSPANG00000011997	SND1	99	99.095	Papio_anubis
ENSVVUG00000007226	SND1	99	81.588	ENSPKIG00000023494	snd1	100	80.849	Paramormyrops_kingsleyae
ENSVVUG00000007226	SND1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSVVUG00000007226	SND1	100	97.802	ENSPEMG00000010240	Snd1	100	97.802	Peromyscus_maniculatus_bairdii
ENSVVUG00000007226	SND1	97	73.672	ENSPMAG00000007915	-	99	73.446	Petromyzon_marinus
ENSVVUG00000007226	SND1	100	96.374	ENSPCIG00000011561	SND1	100	96.374	Phascolarctos_cinereus
ENSVVUG00000007226	SND1	100	83.772	ENSPFOG00000001557	snd1	100	83.772	Poecilia_formosa
ENSVVUG00000007226	SND1	100	83.772	ENSPLAG00000018459	snd1	97	83.772	Poecilia_latipinna
ENSVVUG00000007226	SND1	100	84.211	ENSPMEG00000006803	snd1	100	84.211	Poecilia_mexicana
ENSVVUG00000007226	SND1	100	84.101	ENSPREG00000002189	snd1	100	84.101	Poecilia_reticulata
ENSVVUG00000007226	SND1	93	99.007	ENSPPYG00000017972	SND1	100	99.007	Pongo_abelii
ENSVVUG00000007226	SND1	100	86.703	ENSPCAG00000011305	SND1	100	86.703	Procavia_capensis
ENSVVUG00000007226	SND1	100	98.791	ENSPCOG00000026791	SND1	100	98.870	Propithecus_coquereli
ENSVVUG00000007226	SND1	100	96.923	ENSPVAG00000013945	SND1	100	96.923	Pteropus_vampyrus
ENSVVUG00000007226	SND1	100	83.333	ENSPNYG00000000932	snd1	100	83.333	Pundamilia_nyererei
ENSVVUG00000007226	SND1	100	83.479	ENSPNAG00000001206	snd1	100	83.479	Pygocentrus_nattereri
ENSVVUG00000007226	SND1	99	97.137	ENSRNOG00000031173	Snd1	99	97.137	Rattus_norvegicus
ENSVVUG00000007226	SND1	73	99.060	ENSRBIG00000027782	-	93	99.240	Rhinopithecus_bieti
ENSVVUG00000007226	SND1	100	99.011	ENSRROG00000033020	SND1	100	99.011	Rhinopithecus_roxellana
ENSVVUG00000007226	SND1	100	99.011	ENSSBOG00000032461	SND1	100	99.011	Saimiri_boliviensis_boliviensis
ENSVVUG00000007226	SND1	98	93.018	ENSSHAG00000015359	SND1	100	93.018	Sarcophilus_harrisii
ENSVVUG00000007226	SND1	100	82.481	ENSSFOG00015001103	snd1	100	82.481	Scleropages_formosus
ENSVVUG00000007226	SND1	98	83.669	ENSSMAG00000001932	snd1	95	82.566	Scophthalmus_maximus
ENSVVUG00000007226	SND1	100	83.662	ENSSDUG00000002699	snd1	94	83.662	Seriola_dumerili
ENSVVUG00000007226	SND1	100	76.425	ENSSLDG00000001950	snd1	100	76.425	Seriola_lalandi_dorsalis
ENSVVUG00000007226	SND1	86	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSVVUG00000007226	SND1	73	87.478	ENSSPUG00000017586	SND1	96	87.478	Sphenodon_punctatus
ENSVVUG00000007226	SND1	73	84.772	ENSSPAG00000021398	snd1	99	84.772	Stegastes_partitus
ENSVVUG00000007226	SND1	100	98.681	ENSSSCG00000016590	SND1	100	98.681	Sus_scrofa
ENSVVUG00000007226	SND1	100	82.675	ENSTRUG00000014067	snd1	100	82.675	Takifugu_rubripes
ENSVVUG00000007226	SND1	100	83.224	ENSTNIG00000011019	snd1	98	85.427	Tetraodon_nigroviridis
ENSVVUG00000007226	SND1	93	93.042	ENSTBEG00000003999	SND1	100	93.042	Tupaia_belangeri
ENSVVUG00000007226	SND1	100	94.396	ENSTTRG00000006059	SND1	100	94.396	Tursiops_truncatus
ENSVVUG00000007226	SND1	91	99.430	ENSUAMG00000005604	-	93	99.430	Ursus_americanus
ENSVVUG00000007226	SND1	71	90.390	ENSUAMG00000002820	-	90	90.390	Ursus_americanus
ENSVVUG00000007226	SND1	100	99.231	ENSUMAG00000005960	SND1	100	99.231	Ursus_maritimus
ENSVVUG00000007226	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSVVUG00000007226	SND1	97	84.859	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSVVUG00000007226	SND1	92	81.473	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSVVUG00000007226	SND1	100	84.320	ENSXMAG00000011469	snd1	100	84.320	Xiphophorus_maculatus