EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVVUG00000007460 (Gene tree)
Gene ID: -
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 86653 bases
Position: chrNBDQ01000073.1:5011654-5098306
Accession: 112927400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000010639	SpoU_methylase	PF00588.19	2.1e-31	1	1
ENSVVUP00000010579	SpoU_methylase	PF00588.19	2.4e-31	1	1
ENSVVUP00000010557	SpoU_methylase	PF00588.19	2.4e-31	1	1
ENSVVUP00000010505	SpoU_methylase	PF00588.19	2.4e-31	1	1
ENSVVUP00000010526	SpoU_methylase	PF00588.19	2.6e-31	1	1
ENSVVUP00000010514	SpoU_methylase	PF00588.19	2.6e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000013870	TARBP1-205	4191	-	ENSVVUP00000010579	1396 (aa)	-	-
ENSVVUT00000013946	TARBP1-206	3603	-	ENSVVUP00000010639	1200 (aa)	-	-
ENSVVUT00000013843	TARBP1-204	4242	-	ENSVVUP00000010557	1413 (aa)	-	-
ENSVVUT00000013794	TARBP1-202	4353	-	ENSVVUP00000010514	1450 (aa)	-	-
ENSVVUT00000013785	TARBP1-201	4257	-	ENSVVUP00000010505	1418 (aa)	-	-
ENSVVUT00000013809	TARBP1-203	4347	XM_026008775	ENSVVUP00000010526	1448 (aa)	XP_025864560	-

Gene Model

Click here to download ENSVVUG00000007460's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000007460's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000007460	TARBP1	97	86.055	ENSG00000059588	TARBP1	85	86.127	Homo_sapiens
ENSVVUG00000007460	TARBP1	99	44.815	ENSAPOG00000016419	si:dkey-85a20.4	84	45.170	Acanthochromis_polyacanthus
ENSVVUG00000007460	TARBP1	97	92.768	ENSAMEG00000003359	TARBP1	100	92.915	Ailuropoda_melanoleuca
ENSVVUG00000007460	TARBP1	98	47.037	ENSATEG00000020266	si:dkey-85a20.4	84	45.182	Anabas_testudineus
ENSVVUG00000007460	TARBP1	97	68.980	ENSAPLG00000007666	TARBP1	99	67.912	Anas_platyrhynchos
ENSVVUG00000007460	TARBP1	99	62.238	ENSACAG00000001142	TARBP1	86	61.083	Anolis_carolinensis
ENSVVUG00000007460	TARBP1	97	82.659	ENSANAG00000022031	TARBP1	88	82.948	Aotus_nancymaae
ENSVVUG00000007460	TARBP1	98	86.570	ENSBTAG00000004517	TARBP1	85	86.643	Bos_taurus
ENSVVUG00000007460	TARBP1	97	85.043	ENSCJAG00000018155	TARBP1	85	85.116	Callithrix_jacchus
ENSVVUG00000007460	TARBP1	98	98.848	ENSCAFG00000011533	TARBP1	98	98.988	Canis_familiaris
ENSVVUG00000007460	TARBP1	98	99.349	ENSCAFG00020027141	TARBP1	87	97.800	Canis_lupus_dingo
ENSVVUG00000007460	TARBP1	97	85.652	ENSCHIG00000011437	TARBP1	85	85.725	Capra_hircus
ENSVVUG00000007460	TARBP1	99	80.000	ENSTSYG00000010382	TARBP1	99	83.973	Carlito_syrichta
ENSVVUG00000007460	TARBP1	90	69.702	ENSCAPG00000010831	TARBP1	99	69.937	Cavia_aperea
ENSVVUG00000007460	TARBP1	99	78.445	ENSCPOG00000013995	TARBP1	86	78.874	Cavia_porcellus
ENSVVUG00000007460	TARBP1	97	85.477	ENSCCAG00000037278	TARBP1	85	85.766	Cebus_capucinus
ENSVVUG00000007460	TARBP1	97	85.766	ENSCATG00000011754	TARBP1	85	85.766	Cercocebus_atys
ENSVVUG00000007460	TARBP1	97	77.778	ENSCLAG00000003655	TARBP1	96	79.495	Chinchilla_lanigera
ENSVVUG00000007460	TARBP1	91	85.826	ENSCSAG00000010100	TARBP1	99	85.981	Chlorocebus_sabaeus
ENSVVUG00000007460	TARBP1	92	69.965	ENSCPBG00000005587	TARBP1	82	75.000	Chrysemys_picta_bellii
ENSVVUG00000007460	TARBP1	96	85.966	ENSCANG00000034343	TARBP1	99	86.040	Colobus_angolensis_palliatus
ENSVVUG00000007460	TARBP1	99	78.445	ENSCGRG00001016690	Tarbp1	88	75.862	Cricetulus_griseus_chok1gshd
ENSVVUG00000007460	TARBP1	99	78.445	ENSCGRG00000016893	Tarbp1	95	76.006	Cricetulus_griseus_crigri
ENSVVUG00000007460	TARBP1	96	42.628	ENSCSEG00000005255	si:dkey-85a20.4	84	45.283	Cynoglossus_semilaevis
ENSVVUG00000007460	TARBP1	98	46.269	ENSDARG00000079055	si:dkey-85a20.4	99	53.287	Danio_rerio
ENSVVUG00000007460	TARBP1	97	85.807	ENSDNOG00000008637	TARBP1	84	85.683	Dasypus_novemcinctus
ENSVVUG00000007460	TARBP1	96	74.897	ENSDORG00000007984	Tarbp1	100	74.460	Dipodomys_ordii
ENSVVUG00000007460	TARBP1	99	88.667	ENSEASG00005000252	TARBP1	86	89.710	Equus_asinus_asinus
ENSVVUG00000007460	TARBP1	98	89.458	ENSECAG00000023673	TARBP1	85	89.660	Equus_caballus
ENSVVUG00000007460	TARBP1	98	45.725	ENSELUG00000012193	si:dkey-85a20.4	85	44.126	Esox_lucius
ENSVVUG00000007460	TARBP1	98	87.852	ENSFCAG00000014183	TARBP1	85	88.006	Felis_catus
ENSVVUG00000007460	TARBP1	96	68.826	ENSFALG00000013565	TARBP1	100	67.376	Ficedula_albicollis
ENSVVUG00000007460	TARBP1	95	76.786	ENSFDAG00000001308	TARBP1	99	76.012	Fukomys_damarensis
ENSVVUG00000007460	TARBP1	95	53.561	ENSFHEG00000007565	si:dkey-85a20.4	84	53.561	Fundulus_heteroclitus
ENSVVUG00000007460	TARBP1	98	44.981	ENSGMOG00000004549	si:dkey-85a20.4	98	43.239	Gadus_morhua
ENSVVUG00000007460	TARBP1	99	61.120	ENSGALG00000011000	TARBP1	87	62.010	Gallus_gallus
ENSVVUG00000007460	TARBP1	96	44.910	ENSGAFG00000007387	si:dkey-85a20.4	83	45.119	Gambusia_affinis
ENSVVUG00000007460	TARBP1	98	45.896	ENSGACG00000005865	si:dkey-85a20.4	98	44.405	Gasterosteus_aculeatus
ENSVVUG00000007460	TARBP1	99	69.258	ENSGAGG00000012102	TARBP1	90	68.951	Gopherus_agassizii
ENSVVUG00000007460	TARBP1	99	82.332	ENSGGOG00000022879	TARBP1	99	83.406	Gorilla_gorilla
ENSVVUG00000007460	TARBP1	98	48.148	ENSHBUG00000008877	si:dkey-85a20.4	83	46.532	Haplochromis_burtoni
ENSVVUG00000007460	TARBP1	99	78.799	ENSHGLG00000011592	TARBP1	89	77.545	Heterocephalus_glaber_female
ENSVVUG00000007460	TARBP1	99	78.799	ENSHGLG00100015169	TARBP1	95	79.290	Heterocephalus_glaber_male
ENSVVUG00000007460	TARBP1	98	42.014	ENSIPUG00000005249	si:dkey-85a20.4	81	44.224	Ictalurus_punctatus
ENSVVUG00000007460	TARBP1	100	78.445	ENSSTOG00000032291	TARBP1	97	76.575	Ictidomys_tridecemlineatus
ENSVVUG00000007460	TARBP1	97	73.270	ENSJJAG00000017840	Tarbp1	95	73.270	Jaculus_jaculus
ENSVVUG00000007460	TARBP1	87	45.061	ENSKMAG00000017546	si:dkey-85a20.4	73	46.720	Kryptolebias_marmoratus
ENSVVUG00000007460	TARBP1	87	48.853	ENSLBEG00000012132	si:dkey-85a20.4	76	49.130	Labrus_bergylta
ENSVVUG00000007460	TARBP1	99	52.595	ENSLACG00000004337	TARBP1	84	54.993	Latimeria_chalumnae
ENSVVUG00000007460	TARBP1	98	49.442	ENSLOCG00000016214	si:dkey-85a20.4	84	50.146	Lepisosteus_oculatus
ENSVVUG00000007460	TARBP1	97	85.600	ENSLAFG00000011394	TARBP1	88	85.580	Loxodonta_africana
ENSVVUG00000007460	TARBP1	97	83.020	ENSMFAG00000041068	TARBP1	88	81.986	Macaca_fascicularis
ENSVVUG00000007460	TARBP1	97	82.948	ENSMMUG00000021703	TARBP1	87	81.915	Macaca_mulatta
ENSVVUG00000007460	TARBP1	97	85.694	ENSMNEG00000045002	TARBP1	85	85.694	Macaca_nemestrina
ENSVVUG00000007460	TARBP1	96	86.136	ENSMLEG00000044182	TARBP1	99	86.283	Mandrillus_leucophaeus
ENSVVUG00000007460	TARBP1	98	46.468	ENSMAMG00000021760	si:dkey-85a20.4	84	46.260	Mastacembelus_armatus
ENSVVUG00000007460	TARBP1	98	48.148	ENSMZEG00005005751	si:dkey-85a20.4	83	46.604	Maylandia_zebra
ENSVVUG00000007460	TARBP1	99	77.739	ENSMAUG00000020968	Tarbp1	86	76.940	Mesocricetus_auratus
ENSVVUG00000007460	TARBP1	93	80.976	ENSMICG00000015280	TARBP1	85	76.207	Microcebus_murinus
ENSVVUG00000007460	TARBP1	99	74.912	ENSMOCG00000004128	Tarbp1	88	74.569	Microtus_ochrogaster
ENSVVUG00000007460	TARBP1	98	46.875	ENSMMOG00000007795	si:dkey-85a20.4	83	44.323	Mola_mola
ENSVVUG00000007460	TARBP1	99	77.323	ENSMODG00000008504	TARBP1	83	75.615	Monodelphis_domestica
ENSVVUG00000007460	TARBP1	98	43.911	ENSMALG00000002916	si:dkey-85a20.4	84	44.931	Monopterus_albus
ENSVVUG00000007460	TARBP1	99	74.558	MGP_CAROLIEiJ_G0031729	Tarbp1	89	73.647	Mus_caroli
ENSVVUG00000007460	TARBP1	99	73.380	ENSMUSG00000090290	Tarbp1	89	73.085	Mus_musculus
ENSVVUG00000007460	TARBP1	99	73.852	MGP_PahariEiJ_G0023326	Tarbp1	89	73.562	Mus_pahari
ENSVVUG00000007460	TARBP1	100	73.145	MGP_SPRETEiJ_G0032846	Tarbp1	89	73.155	Mus_spretus
ENSVVUG00000007460	TARBP1	88	89.630	ENSMPUG00000002802	TARBP1	100	89.630	Mustela_putorius_furo
ENSVVUG00000007460	TARBP1	100	73.852	ENSMLUG00000002414	TARBP1	100	76.834	Myotis_lucifugus
ENSVVUG00000007460	TARBP1	97	85.910	ENSNLEG00000002518	TARBP1	85	86.199	Nomascus_leucogenys
ENSVVUG00000007460	TARBP1	63	75.636	ENSMEUG00000011370	-	54	75.636	Notamacropus_eugenii
ENSVVUG00000007460	TARBP1	80	84.053	ENSOPRG00000013822	TARBP1	70	84.053	Ochotona_princeps
ENSVVUG00000007460	TARBP1	99	78.799	ENSODEG00000005238	TARBP1	92	76.360	Octodon_degus
ENSVVUG00000007460	TARBP1	98	46.182	ENSONIG00000009789	si:dkey-85a20.4	97	46.071	Oreochromis_niloticus
ENSVVUG00000007460	TARBP1	99	83.039	ENSOCUG00000017418	TARBP1	85	84.275	Oryctolagus_cuniculus
ENSVVUG00000007460	TARBP1	97	43.266	ENSORLG00000010529	si:dkey-85a20.4	84	43.500	Oryzias_latipes
ENSVVUG00000007460	TARBP1	95	44.727	ENSORLG00020019264	si:dkey-85a20.4	83	43.790	Oryzias_latipes_hni
ENSVVUG00000007460	TARBP1	97	43.419	ENSORLG00015003276	si:dkey-85a20.4	84	43.652	Oryzias_latipes_hsok
ENSVVUG00000007460	TARBP1	99	81.272	ENSOGAG00000002379	TARBP1	85	82.357	Otolemur_garnettii
ENSVVUG00000007460	TARBP1	97	85.601	ENSOARG00000003434	TARBP1	92	85.673	Ovis_aries
ENSVVUG00000007460	TARBP1	96	86.144	ENSPPAG00000028097	TARBP1	99	86.437	Pan_paniscus
ENSVVUG00000007460	TARBP1	98	86.311	ENSPPRG00000013561	TARBP1	91	85.582	Panthera_pardus
ENSVVUG00000007460	TARBP1	95	90.395	ENSPTIG00000009281	TARBP1	100	90.551	Panthera_tigris_altaica
ENSVVUG00000007460	TARBP1	97	85.694	ENSPTRG00000002124	TARBP1	85	85.983	Pan_troglodytes
ENSVVUG00000007460	TARBP1	97	85.910	ENSPANG00000021933	TARBP1	85	85.910	Papio_anubis
ENSVVUG00000007460	TARBP1	98	49.627	ENSPKIG00000016716	si:dkey-85a20.4	82	47.144	Paramormyrops_kingsleyae
ENSVVUG00000007460	TARBP1	95	71.875	ENSPSIG00000010699	TARBP1	99	69.782	Pelodiscus_sinensis
ENSVVUG00000007460	TARBP1	99	79.554	ENSPEMG00000006888	Tarbp1	91	77.013	Peromyscus_maniculatus_bairdii
ENSVVUG00000007460	TARBP1	90	81.553	ENSPCIG00000029710	TARBP1	85	81.553	Phascolarctos_cinereus
ENSVVUG00000007460	TARBP1	99	44.413	ENSPFOG00000013020	si:dkey-85a20.4	98	45.007	Poecilia_formosa
ENSVVUG00000007460	TARBP1	99	44.554	ENSPLAG00000006044	si:dkey-85a20.4	84	45.221	Poecilia_latipinna
ENSVVUG00000007460	TARBP1	99	44.397	ENSPMEG00000017857	si:dkey-85a20.4	84	45.221	Poecilia_mexicana
ENSVVUG00000007460	TARBP1	98	43.500	ENSPREG00000022753	si:dkey-85a20.4	84	45.154	Poecilia_reticulata
ENSVVUG00000007460	TARBP1	89	91.111	ENSPPYG00000000102	TARBP1	84	87.500	Pongo_abelii
ENSVVUG00000007460	TARBP1	82	86.364	ENSPCAG00000004808	TARBP1	71	86.364	Procavia_capensis
ENSVVUG00000007460	TARBP1	97	84.153	ENSPCOG00000005666	TARBP1	85	84.153	Propithecus_coquereli
ENSVVUG00000007460	TARBP1	97	68.913	ENSPVAG00000014798	TARBP1	85	68.913	Pteropus_vampyrus
ENSVVUG00000007460	TARBP1	96	45.700	ENSPNYG00000019135	si:dkey-85a20.4	83	45.700	Pundamilia_nyererei
ENSVVUG00000007460	TARBP1	99	73.759	ENSRNOG00000053574	Tarbp1	89	68.895	Rattus_norvegicus
ENSVVUG00000007460	TARBP1	99	80.821	ENSRBIG00000043362	TARBP1	95	78.865	Rhinopithecus_bieti
ENSVVUG00000007460	TARBP1	97	85.477	ENSRROG00000029527	TARBP1	91	84.397	Rhinopithecus_roxellana
ENSVVUG00000007460	TARBP1	96	85.451	ENSSBOG00000034503	TARBP1	99	84.211	Saimiri_boliviensis_boliviensis
ENSVVUG00000007460	TARBP1	99	73.978	ENSSHAG00000000013	TARBP1	100	75.110	Sarcophilus_harrisii
ENSVVUG00000007460	TARBP1	98	46.840	ENSSFOG00015002660	si:dkey-85a20.4	97	45.892	Scleropages_formosus
ENSVVUG00000007460	TARBP1	99	47.794	ENSSMAG00000007081	si:dkey-85a20.4	82	46.308	Scophthalmus_maximus
ENSVVUG00000007460	TARBP1	99	46.324	ENSSDUG00000023566	si:dkey-85a20.4	84	44.493	Seriola_dumerili
ENSVVUG00000007460	TARBP1	98	47.407	ENSSLDG00000020200	si:dkey-85a20.4	84	46.398	Seriola_lalandi_dorsalis
ENSVVUG00000007460	TARBP1	90	84.562	ENSSARG00000012207	TARBP1	76	84.562	Sorex_araneus
ENSVVUG00000007460	TARBP1	99	64.669	ENSSPUG00000015364	TARBP1	85	66.399	Sphenodon_punctatus
ENSVVUG00000007460	TARBP1	99	45.926	ENSSPAG00000007213	si:dkey-85a20.4	84	45.474	Stegastes_partitus
ENSVVUG00000007460	TARBP1	99	85.785	ENSSSCG00000010160	TARBP1	87	85.856	Sus_scrofa
ENSVVUG00000007460	TARBP1	96	68.016	ENSTGUG00000010214	TARBP1	100	67.406	Taeniopygia_guttata
ENSVVUG00000007460	TARBP1	96	43.904	ENSTNIG00000016586	si:dkey-85a20.4	99	44.049	Tetraodon_nigroviridis
ENSVVUG00000007460	TARBP1	89	92.222	ENSTTRG00000008707	TARBP1	84	84.981	Tursiops_truncatus
ENSVVUG00000007460	TARBP1	97	89.787	ENSUMAG00000006730	TARBP1	99	92.406	Ursus_maritimus
ENSVVUG00000007460	TARBP1	87	90.625	ENSVPAG00000007665	TARBP1	81	90.625	Vicugna_pacos
ENSVVUG00000007460	TARBP1	99	55.903	ENSXETG00000016224	tarbp1	99	55.733	Xenopus_tropicalis
ENSVVUG00000007460	TARBP1	91	48.093	ENSXCOG00000011779	si:dkey-85a20.4	91	49.250	Xiphophorus_couchianus
ENSVVUG00000007460	TARBP1	74	43.268	ENSXMAG00000009600	si:dkey-85a20.4	100	43.535	Xiphophorus_maculatus