EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSVVUG00000008824 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 13437 bases
Position: chrNBDQ01000219.1:349613-363049
Accession: 112910022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000011952	zf-CCCH	PF00642.24	2.5e-20	1	2
ENSVVUP00000011952	zf-CCCH	PF00642.24	2.5e-20	2	2
ENSVVUP00000011952	zf-CCHC	PF00098.23	5.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000015660	CPSF4-201	735	-	ENSVVUP00000011952	244 (aa)	XP_025842037	UPI00005A0F1F

Gene Model

Click here to download ENSVVUG00000008824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000008824's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000008824	CPSF4	100	98.770	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSVVUG00000008824	CPSF4	64	68.927	ENSAPOG00000004921	cpsf4	100	68.927	Acanthochromis_polyacanthus
ENSVVUG00000008824	CPSF4	100	90.335	ENSAMEG00000006252	CPSF4	100	90.335	Ailuropoda_melanoleuca
ENSVVUG00000008824	CPSF4	100	87.295	ENSACIG00000009248	cpsf4	100	87.295	Amphilophus_citrinellus
ENSVVUG00000008824	CPSF4	100	81.509	ENSAOCG00000019616	cpsf4	100	81.509	Amphiprion_ocellaris
ENSVVUG00000008824	CPSF4	100	81.509	ENSAPEG00000011679	cpsf4	100	81.509	Amphiprion_percula
ENSVVUG00000008824	CPSF4	100	85.830	ENSATEG00000007010	cpsf4	100	85.830	Anabas_testudineus
ENSVVUG00000008824	CPSF4	100	82.900	ENSACAG00000012941	CPSF4	89	82.528	Anolis_carolinensis
ENSVVUG00000008824	CPSF4	100	89.591	ENSANAG00000021360	CPSF4	100	89.591	Aotus_nancymaae
ENSVVUG00000008824	CPSF4	100	80.738	ENSACLG00000010374	cpsf4	100	80.738	Astatotilapia_calliptera
ENSVVUG00000008824	CPSF4	100	79.630	ENSAMXG00000031647	cpsf4	100	80.741	Astyanax_mexicanus
ENSVVUG00000008824	CPSF4	100	98.361	ENSBTAG00000002090	CPSF4	100	98.361	Bos_taurus
ENSVVUG00000008824	CPSF4	100	89.591	ENSCJAG00000015826	CPSF4	100	89.591	Callithrix_jacchus
ENSVVUG00000008824	CPSF4	100	90.706	ENSCAFG00000015036	CPSF4	100	90.706	Canis_familiaris
ENSVVUG00000008824	CPSF4	100	84.387	ENSCAFG00020014462	CPSF4	100	84.387	Canis_lupus_dingo
ENSVVUG00000008824	CPSF4	100	89.591	ENSCHIG00000014313	CPSF4	100	89.591	Capra_hircus
ENSVVUG00000008824	CPSF4	100	90.204	ENSTSYG00000014604	-	100	90.204	Carlito_syrichta
ENSVVUG00000008824	CPSF4	88	92.130	ENSTSYG00000008195	-	99	91.556	Carlito_syrichta
ENSVVUG00000008824	CPSF4	100	98.770	ENSTSYG00000005712	-	100	98.770	Carlito_syrichta
ENSVVUG00000008824	CPSF4	79	88.073	ENSCAPG00000013881	CPSF4	87	88.073	Cavia_aperea
ENSVVUG00000008824	CPSF4	100	99.590	ENSCPOG00000001783	CPSF4	100	99.590	Cavia_porcellus
ENSVVUG00000008824	CPSF4	100	89.591	ENSCCAG00000028291	CPSF4	100	89.591	Cebus_capucinus
ENSVVUG00000008824	CPSF4	100	91.393	ENSCATG00000038440	CPSF4	100	89.591	Cercocebus_atys
ENSVVUG00000008824	CPSF4	100	89.963	ENSCLAG00000007050	CPSF4	100	89.963	Chinchilla_lanigera
ENSVVUG00000008824	CPSF4	100	89.591	ENSCSAG00000017795	CPSF4	100	89.591	Chlorocebus_sabaeus
ENSVVUG00000008824	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSVVUG00000008824	CPSF4	78	81.481	ENSCPBG00000020869	CPSF4	100	81.019	Chrysemys_picta_bellii
ENSVVUG00000008824	CPSF4	96	56.299	ENSCING00000021080	-	97	56.693	Ciona_intestinalis
ENSVVUG00000008824	CPSF4	96	53.004	ENSCSAVG00000011469	-	97	51.957	Ciona_savignyi
ENSVVUG00000008824	CPSF4	100	91.393	ENSCANG00000019384	CPSF4	100	89.591	Colobus_angolensis_palliatus
ENSVVUG00000008824	CPSF4	100	99.590	ENSCGRG00001024184	Cpsf4	100	99.590	Cricetulus_griseus_chok1gshd
ENSVVUG00000008824	CPSF4	100	90.335	ENSCGRG00000013892	Cpsf4	100	90.335	Cricetulus_griseus_crigri
ENSVVUG00000008824	CPSF4	100	80.000	ENSCSEG00000019055	cpsf4	100	80.000	Cynoglossus_semilaevis
ENSVVUG00000008824	CPSF4	100	80.377	ENSCVAG00000016528	cpsf4	100	80.377	Cyprinodon_variegatus
ENSVVUG00000008824	CPSF4	100	79.336	ENSDARG00000020217	cpsf4	100	79.705	Danio_rerio
ENSVVUG00000008824	CPSF4	100	89.963	ENSDNOG00000006344	CPSF4	100	89.963	Dasypus_novemcinctus
ENSVVUG00000008824	CPSF4	79	87.558	ENSDORG00000000742	Cpsf4	100	87.558	Dipodomys_ordii
ENSVVUG00000008824	CPSF4	100	51.505	FBgn0015621	Clp	99	53.082	Drosophila_melanogaster
ENSVVUG00000008824	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSVVUG00000008824	CPSF4	99	70.902	ENSEBUG00000012552	cpsf4	98	71.193	Eptatretus_burgeri
ENSVVUG00000008824	CPSF4	100	99.590	ENSEASG00005002487	CPSF4	100	99.590	Equus_asinus_asinus
ENSVVUG00000008824	CPSF4	100	90.335	ENSECAG00000007525	CPSF4	100	90.335	Equus_caballus
ENSVVUG00000008824	CPSF4	59	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSVVUG00000008824	CPSF4	100	79.412	ENSELUG00000011481	cpsf4	100	79.412	Esox_lucius
ENSVVUG00000008824	CPSF4	100	90.335	ENSFCAG00000015070	CPSF4	100	90.335	Felis_catus
ENSVVUG00000008824	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSVVUG00000008824	CPSF4	100	94.262	ENSFALG00000013799	CPSF4	100	94.672	Ficedula_albicollis
ENSVVUG00000008824	CPSF4	89	88.477	ENSFDAG00000014092	CPSF4	100	88.477	Fukomys_damarensis
ENSVVUG00000008824	CPSF4	100	80.377	ENSFHEG00000010880	cpsf4	100	80.377	Fundulus_heteroclitus
ENSVVUG00000008824	CPSF4	100	80.233	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSVVUG00000008824	CPSF4	100	94.262	ENSGALG00000004714	CPSF4	100	94.672	Gallus_gallus
ENSVVUG00000008824	CPSF4	65	39.888	ENSGALG00000004441	-	98	38.202	Gallus_gallus
ENSVVUG00000008824	CPSF4	100	80.303	ENSGAFG00000010580	cpsf4	100	80.303	Gambusia_affinis
ENSVVUG00000008824	CPSF4	100	82.283	ENSGACG00000007792	cpsf4	100	82.283	Gasterosteus_aculeatus
ENSVVUG00000008824	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSVVUG00000008824	CPSF4	100	84.387	ENSGAGG00000021835	CPSF4	100	84.015	Gopherus_agassizii
ENSVVUG00000008824	CPSF4	100	89.591	ENSGGOG00000015131	CPSF4	100	89.591	Gorilla_gorilla
ENSVVUG00000008824	CPSF4	100	80.000	ENSHBUG00000013699	cpsf4	100	80.000	Haplochromis_burtoni
ENSVVUG00000008824	CPSF4	100	89.299	ENSHGLG00000017150	CPSF4	100	89.299	Heterocephalus_glaber_female
ENSVVUG00000008824	CPSF4	100	62.705	ENSHGLG00100017302	-	100	62.705	Heterocephalus_glaber_male
ENSVVUG00000008824	CPSF4	86	86.017	ENSHGLG00100009215	-	100	86.017	Heterocephalus_glaber_male
ENSVVUG00000008824	CPSF4	100	79.623	ENSHCOG00000004397	cpsf4	100	79.623	Hippocampus_comes
ENSVVUG00000008824	CPSF4	100	78.229	ENSIPUG00000017147	cpsf4	100	80.074	Ictalurus_punctatus
ENSVVUG00000008824	CPSF4	100	99.180	ENSSTOG00000001688	CPSF4	100	99.180	Ictidomys_tridecemlineatus
ENSVVUG00000008824	CPSF4	100	89.963	ENSJJAG00000019426	Cpsf4	100	89.963	Jaculus_jaculus
ENSVVUG00000008824	CPSF4	100	78.491	ENSKMAG00000015642	cpsf4	100	78.491	Kryptolebias_marmoratus
ENSVVUG00000008824	CPSF4	100	65.854	ENSLACG00000018470	-	100	64.082	Latimeria_chalumnae
ENSVVUG00000008824	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSVVUG00000008824	CPSF4	100	81.784	ENSLOCG00000004814	cpsf4	100	81.784	Lepisosteus_oculatus
ENSVVUG00000008824	CPSF4	100	89.963	ENSLAFG00000000159	CPSF4	100	89.963	Loxodonta_africana
ENSVVUG00000008824	CPSF4	100	91.393	ENSMFAG00000001462	CPSF4	100	98.429	Macaca_fascicularis
ENSVVUG00000008824	CPSF4	100	89.591	ENSMMUG00000019191	CPSF4	100	89.591	Macaca_mulatta
ENSVVUG00000008824	CPSF4	100	91.393	ENSMNEG00000032306	CPSF4	100	89.591	Macaca_nemestrina
ENSVVUG00000008824	CPSF4	100	91.393	ENSMLEG00000034721	CPSF4	100	89.591	Mandrillus_leucophaeus
ENSVVUG00000008824	CPSF4	100	80.827	ENSMAMG00000006244	cpsf4	100	80.827	Mastacembelus_armatus
ENSVVUG00000008824	CPSF4	100	80.000	ENSMZEG00005007515	cpsf4	100	80.000	Maylandia_zebra
ENSVVUG00000008824	CPSF4	86	93.810	ENSMGAG00000004235	CPSF4	100	94.286	Meleagris_gallopavo
ENSVVUG00000008824	CPSF4	100	90.335	ENSMAUG00000021253	Cpsf4	100	90.335	Mesocricetus_auratus
ENSVVUG00000008824	CPSF4	100	89.591	ENSMICG00000017429	CPSF4	100	89.591	Microcebus_murinus
ENSVVUG00000008824	CPSF4	100	90.335	ENSMOCG00000014901	Cpsf4	100	90.335	Microtus_ochrogaster
ENSVVUG00000008824	CPSF4	100	80.075	ENSMMOG00000001813	cpsf4	95	87.879	Mola_mola
ENSVVUG00000008824	CPSF4	100	88.104	ENSMODG00000001367	CPSF4	100	88.104	Monodelphis_domestica
ENSVVUG00000008824	CPSF4	100	81.273	ENSMALG00000012611	cpsf4	100	81.273	Monopterus_albus
ENSVVUG00000008824	CPSF4	100	99.590	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.590	Mus_caroli
ENSVVUG00000008824	CPSF4	100	99.590	ENSMUSG00000029625	Cpsf4	100	99.590	Mus_musculus
ENSVVUG00000008824	CPSF4	100	99.590	MGP_PahariEiJ_G0024581	Cpsf4	100	99.590	Mus_pahari
ENSVVUG00000008824	CPSF4	100	99.180	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.180	Mus_spretus
ENSVVUG00000008824	CPSF4	100	90.335	ENSMPUG00000016508	CPSF4	100	90.335	Mustela_putorius_furo
ENSVVUG00000008824	CPSF4	86	98.095	ENSMLUG00000010980	CPSF4	100	98.095	Myotis_lucifugus
ENSVVUG00000008824	CPSF4	100	89.963	ENSNGAG00000001567	Cpsf4	100	89.963	Nannospalax_galili
ENSVVUG00000008824	CPSF4	90	79.253	ENSNBRG00000003943	cpsf4	98	79.253	Neolamprologus_brichardi
ENSVVUG00000008824	CPSF4	100	98.770	ENSNLEG00000011074	CPSF4	100	98.770	Nomascus_leucogenys
ENSVVUG00000008824	CPSF4	100	88.104	ENSMEUG00000006955	CPSF4	100	88.104	Notamacropus_eugenii
ENSVVUG00000008824	CPSF4	100	89.591	ENSOPRG00000013663	CPSF4	100	89.591	Ochotona_princeps
ENSVVUG00000008824	CPSF4	100	73.180	ENSODEG00000009779	-	100	73.180	Octodon_degus
ENSVVUG00000008824	CPSF4	100	90.335	ENSODEG00000011181	-	100	90.335	Octodon_degus
ENSVVUG00000008824	CPSF4	98	84.167	ENSODEG00000018283	-	91	84.167	Octodon_degus
ENSVVUG00000008824	CPSF4	100	80.000	ENSONIG00000008495	cpsf4	100	80.000	Oreochromis_niloticus
ENSVVUG00000008824	CPSF4	86	85.897	ENSOANG00000007729	CPSF4	100	81.624	Ornithorhynchus_anatinus
ENSVVUG00000008824	CPSF4	100	53.237	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSVVUG00000008824	CPSF4	100	89.591	ENSOCUG00000002437	CPSF4	70	89.591	Oryctolagus_cuniculus
ENSVVUG00000008824	CPSF4	100	80.377	ENSORLG00000022798	cpsf4	100	78.113	Oryzias_latipes
ENSVVUG00000008824	CPSF4	100	80.377	ENSORLG00020008548	cpsf4	100	78.113	Oryzias_latipes_hni
ENSVVUG00000008824	CPSF4	100	80.000	ENSORLG00015019575	cpsf4	100	77.736	Oryzias_latipes_hsok
ENSVVUG00000008824	CPSF4	100	79.245	ENSOMEG00000005176	cpsf4	100	77.736	Oryzias_melastigma
ENSVVUG00000008824	CPSF4	100	89.963	ENSOGAG00000010884	CPSF4	100	89.963	Otolemur_garnettii
ENSVVUG00000008824	CPSF4	100	78.755	ENSOARG00000018668	CPSF4	100	76.923	Ovis_aries
ENSVVUG00000008824	CPSF4	100	89.219	ENSPPAG00000043355	CPSF4	100	89.219	Pan_paniscus
ENSVVUG00000008824	CPSF4	100	90.335	ENSPPRG00000003134	CPSF4	100	90.335	Panthera_pardus
ENSVVUG00000008824	CPSF4	89	88.843	ENSPTIG00000005604	CPSF4	90	88.843	Panthera_tigris_altaica
ENSVVUG00000008824	CPSF4	100	89.219	ENSPTRG00000019453	CPSF4	100	89.219	Pan_troglodytes
ENSVVUG00000008824	CPSF4	100	91.393	ENSPANG00000023123	CPSF4	100	89.591	Papio_anubis
ENSVVUG00000008824	CPSF4	100	80.292	ENSPKIG00000014278	cpsf4	100	80.292	Paramormyrops_kingsleyae
ENSVVUG00000008824	CPSF4	79	65.306	ENSPSIG00000018198	-	100	64.767	Pelodiscus_sinensis
ENSVVUG00000008824	CPSF4	78	81.019	ENSPSIG00000011229	CPSF4	100	80.556	Pelodiscus_sinensis
ENSVVUG00000008824	CPSF4	100	80.738	ENSPMGG00000017735	cpsf4	100	78.455	Periophthalmus_magnuspinnatus
ENSVVUG00000008824	CPSF4	100	90.335	ENSPEMG00000004508	Cpsf4	100	90.335	Peromyscus_maniculatus_bairdii
ENSVVUG00000008824	CPSF4	100	88.104	ENSPCIG00000024776	CPSF4	100	88.104	Phascolarctos_cinereus
ENSVVUG00000008824	CPSF4	100	80.303	ENSPFOG00000014912	cpsf4	100	80.303	Poecilia_formosa
ENSVVUG00000008824	CPSF4	100	79.675	ENSPLAG00000009599	cpsf4	100	79.268	Poecilia_latipinna
ENSVVUG00000008824	CPSF4	100	80.303	ENSPMEG00000009790	cpsf4	100	80.303	Poecilia_mexicana
ENSVVUG00000008824	CPSF4	100	79.545	ENSPREG00000018166	cpsf4	100	77.099	Poecilia_reticulata
ENSVVUG00000008824	CPSF4	86	87.179	ENSPPYG00000017378	CPSF4	100	87.179	Pongo_abelii
ENSVVUG00000008824	CPSF4	100	89.219	ENSPCAG00000001892	CPSF4	100	89.219	Procavia_capensis
ENSVVUG00000008824	CPSF4	100	89.963	ENSPCOG00000012771	CPSF4	100	89.963	Propithecus_coquereli
ENSVVUG00000008824	CPSF4	100	83.643	ENSPVAG00000007531	CPSF4	100	83.643	Pteropus_vampyrus
ENSVVUG00000008824	CPSF4	100	80.000	ENSPNYG00000018559	cpsf4	100	80.000	Pundamilia_nyererei
ENSVVUG00000008824	CPSF4	100	81.852	ENSPNAG00000003736	cpsf4	100	79.259	Pygocentrus_nattereri
ENSVVUG00000008824	CPSF4	100	99.180	ENSRNOG00000000985	Cpsf4	100	99.180	Rattus_norvegicus
ENSVVUG00000008824	CPSF4	86	88.034	ENSRBIG00000033886	CPSF4	100	88.034	Rhinopithecus_bieti
ENSVVUG00000008824	CPSF4	100	98.770	ENSRROG00000040431	CPSF4	100	98.770	Rhinopithecus_roxellana
ENSVVUG00000008824	CPSF4	100	89.591	ENSSBOG00000020493	CPSF4	100	98.429	Saimiri_boliviensis_boliviensis
ENSVVUG00000008824	CPSF4	100	88.104	ENSSHAG00000011533	CPSF4	100	88.104	Sarcophilus_harrisii
ENSVVUG00000008824	CPSF4	100	81.522	ENSSFOG00015007883	cpsf4	100	81.522	Scleropages_formosus
ENSVVUG00000008824	CPSF4	100	86.122	ENSSMAG00000006374	cpsf4	100	86.122	Scophthalmus_maximus
ENSVVUG00000008824	CPSF4	100	80.899	ENSSDUG00000018887	cpsf4	100	80.899	Seriola_dumerili
ENSVVUG00000008824	CPSF4	100	80.899	ENSSLDG00000019078	cpsf4	100	81.648	Seriola_lalandi_dorsalis
ENSVVUG00000008824	CPSF4	86	88.462	ENSSARG00000012416	CPSF4	100	88.462	Sorex_araneus
ENSVVUG00000008824	CPSF4	100	85.502	ENSSPUG00000003549	CPSF4	100	83.643	Sphenodon_punctatus
ENSVVUG00000008824	CPSF4	95	65.236	ENSSPUG00000014803	-	97	64.135	Sphenodon_punctatus
ENSVVUG00000008824	CPSF4	100	87.705	ENSSPAG00000006174	cpsf4	100	87.705	Stegastes_partitus
ENSVVUG00000008824	CPSF4	100	99.180	ENSSSCG00000026896	CPSF4	100	99.180	Sus_scrofa
ENSVVUG00000008824	CPSF4	100	93.089	ENSTGUG00000007552	CPSF4	100	93.496	Taeniopygia_guttata
ENSVVUG00000008824	CPSF4	100	79.087	ENSTRUG00000024220	cpsf4	100	79.087	Takifugu_rubripes
ENSVVUG00000008824	CPSF4	100	78.707	ENSTNIG00000006265	cpsf4	100	79.468	Tetraodon_nigroviridis
ENSVVUG00000008824	CPSF4	86	76.496	ENSTBEG00000011406	CPSF4	100	76.923	Tupaia_belangeri
ENSVVUG00000008824	CPSF4	100	78.067	ENSTTRG00000003007	CPSF4	100	78.067	Tursiops_truncatus
ENSVVUG00000008824	CPSF4	91	99.099	ENSUAMG00000008051	CPSF4	85	99.099	Ursus_americanus
ENSVVUG00000008824	CPSF4	100	99.180	ENSUMAG00000009474	CPSF4	100	99.180	Ursus_maritimus
ENSVVUG00000008824	CPSF4	99	61.654	ENSXETG00000004641	cpsf4l	99	60.148	Xenopus_tropicalis
ENSVVUG00000008824	CPSF4	100	79.928	ENSXETG00000009892	cpsf4	100	79.211	Xenopus_tropicalis
ENSVVUG00000008824	CPSF4	100	79.924	ENSXCOG00000016040	cpsf4	100	79.924	Xiphophorus_couchianus
ENSVVUG00000008824	CPSF4	100	80.303	ENSXMAG00000024670	cpsf4	100	80.303	Xiphophorus_maculatus