EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSVVUG00000008878 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Vulpes_vulpes
Status: putative
Strand: Minus strand
Length: 71963 bases
Position: chrNBDQ01000147.1:3552507-3624469
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSVVUP00000012026	ResIII	PF04851.15	1.5e-12	1	1
ENSVVUP00000012015	ResIII	PF04851.15	1.6e-12	1	1
ENSVVUP00000012026	DEAD	PF00270.29	1.3e-06	1	1
ENSVVUP00000012015	DEAD	PF00270.29	1.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSVVUT00000015744	SMARCA1-201	3104	-	ENSVVUP00000012015	1001 (aa)	-	-
ENSVVUT00000015756	SMARCA1-202	2877	-	ENSVVUP00000012026	958 (aa)	-	-

Gene Model

Click here to download ENSVVUG00000008878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSVVUG00000008878's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSVVUG00000008878	SMARCA1	98	87.407	ENSVVUG00000017473	SMARCA5	93	85.831
ENSVVUG00000008878	SMARCA1	54	48.606	ENSVVUG00000022808	HELLS	64	48.606
ENSVVUG00000008878	SMARCA1	59	42.958	ENSVVUG00000007316	CHD1L	59	42.958

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSVVUG00000008878	SMARCA1	99	99.060	ENSG00000102038	SMARCA1	95	99.000	Homo_sapiens
ENSVVUG00000008878	SMARCA1	98	85.059	ENSAPOG00000016035	smarca5	98	84.245	Acanthochromis_polyacanthus
ENSVVUG00000008878	SMARCA1	99	98.246	ENSAMEG00000015218	SMARCA1	95	98.221	Ailuropoda_melanoleuca
ENSVVUG00000008878	SMARCA1	90	85.764	ENSACIG00000016982	smarca5	99	84.375	Amphilophus_citrinellus
ENSVVUG00000008878	SMARCA1	98	85.059	ENSAOCG00000015578	smarca5	95	82.828	Amphiprion_ocellaris
ENSVVUG00000008878	SMARCA1	98	85.059	ENSAPEG00000011117	smarca5	99	84.316	Amphiprion_percula
ENSVVUG00000008878	SMARCA1	98	84.984	ENSATEG00000012894	smarca5	95	82.828	Anabas_testudineus
ENSVVUG00000008878	SMARCA1	98	93.936	ENSAPLG00000013149	SMARCA1	100	93.177	Anas_platyrhynchos
ENSVVUG00000008878	SMARCA1	99	92.573	ENSACAG00000011376	SMARCA1	95	91.500	Anolis_carolinensis
ENSVVUG00000008878	SMARCA1	99	93.694	ENSANAG00000023098	SMARCA1	94	93.700	Aotus_nancymaae
ENSVVUG00000008878	SMARCA1	98	85.304	ENSACLG00000025356	smarca5	95	83.367	Astatotilapia_calliptera
ENSVVUG00000008878	SMARCA1	93	89.298	ENSAMXG00000011227	smarca1	99	90.182	Astyanax_mexicanus
ENSVVUG00000008878	SMARCA1	98	85.470	ENSAMXG00000005709	smarca5	94	84.103	Astyanax_mexicanus
ENSVVUG00000008878	SMARCA1	99	99.060	ENSBTAG00000002292	SMARCA1	94	97.674	Bos_taurus
ENSVVUG00000008878	SMARCA1	99	64.256	WBGene00002169	isw-1	97	63.434	Caenorhabditis_elegans
ENSVVUG00000008878	SMARCA1	99	98.955	ENSCJAG00000002868	SMARCA1	95	98.800	Callithrix_jacchus
ENSVVUG00000008878	SMARCA1	99	89.075	ENSCAFG00000018673	SMARCA1	99	89.176	Canis_familiaris
ENSVVUG00000008878	SMARCA1	99	99.900	ENSCAFG00020001751	SMARCA1	95	99.900	Canis_lupus_dingo
ENSVVUG00000008878	SMARCA1	99	99.164	ENSCHIG00000009837	SMARCA1	94	99.000	Capra_hircus
ENSVVUG00000008878	SMARCA1	100	97.921	ENSTSYG00000004240	SMARCA1	98	97.961	Carlito_syrichta
ENSVVUG00000008878	SMARCA1	100	96.392	ENSCPOG00000013601	SMARCA1	95	96.918	Cavia_porcellus
ENSVVUG00000008878	SMARCA1	99	95.600	ENSCCAG00000030817	SMARCA1	94	95.600	Cebus_capucinus
ENSVVUG00000008878	SMARCA1	100	98.956	ENSCATG00000015921	SMARCA1	94	98.976	Cercocebus_atys
ENSVVUG00000008878	SMARCA1	99	97.597	ENSCLAG00000002171	SMARCA1	95	97.400	Chinchilla_lanigera
ENSVVUG00000008878	SMARCA1	99	99.060	ENSCSAG00000008460	SMARCA1	95	98.900	Chlorocebus_sabaeus
ENSVVUG00000008878	SMARCA1	99	93.724	ENSCPBG00000001146	SMARCA1	94	93.000	Chrysemys_picta_bellii
ENSVVUG00000008878	SMARCA1	98	75.079	ENSCING00000004110	swi/snf	98	73.085	Ciona_intestinalis
ENSVVUG00000008878	SMARCA1	99	74.109	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSVVUG00000008878	SMARCA1	99	98.955	ENSCANG00000007183	SMARCA1	95	98.900	Colobus_angolensis_palliatus
ENSVVUG00000008878	SMARCA1	99	96.865	ENSCGRG00001010776	Smarca1	94	96.500	Cricetulus_griseus_chok1gshd
ENSVVUG00000008878	SMARCA1	100	96.054	ENSCGRG00000015301	Smarca1	98	95.723	Cricetulus_griseus_crigri
ENSVVUG00000008878	SMARCA1	99	84.503	ENSCSEG00000000328	smarca5	95	83.030	Cynoglossus_semilaevis
ENSVVUG00000008878	SMARCA1	98	84.665	ENSCVAG00000008668	smarca5	99	83.863	Cyprinodon_variegatus
ENSVVUG00000008878	SMARCA1	99	87.001	ENSDARG00000012776	smarca1	97	85.375	Danio_rerio
ENSVVUG00000008878	SMARCA1	98	85.043	ENSDARG00000052348	smarca5	95	82.710	Danio_rerio
ENSVVUG00000008878	SMARCA1	100	97.495	ENSDNOG00000004315	SMARCA1	94	97.134	Dasypus_novemcinctus
ENSVVUG00000008878	SMARCA1	100	96.973	ENSDORG00000009270	Smarca1	94	96.725	Dipodomys_ordii
ENSVVUG00000008878	SMARCA1	98	74.576	FBgn0011604	Iswi	98	72.512	Drosophila_melanogaster
ENSVVUG00000008878	SMARCA1	85	92.857	ENSETEG00000017426	SMARCA1	85	92.857	Echinops_telfairi
ENSVVUG00000008878	SMARCA1	97	82.511	ENSEBUG00000001239	smarca5	96	80.899	Eptatretus_burgeri
ENSVVUG00000008878	SMARCA1	99	94.775	ENSEASG00005008218	SMARCA1	100	93.737	Equus_asinus_asinus
ENSVVUG00000008878	SMARCA1	99	99.478	ENSECAG00000012106	SMARCA1	94	99.300	Equus_caballus
ENSVVUG00000008878	SMARCA1	83	98.013	ENSEEUG00000014927	SMARCA1	82	98.013	Erinaceus_europaeus
ENSVVUG00000008878	SMARCA1	98	88.547	ENSELUG00000010515	smarca1	98	86.697	Esox_lucius
ENSVVUG00000008878	SMARCA1	99	99.600	ENSFCAG00000018496	SMARCA1	95	99.600	Felis_catus
ENSVVUG00000008878	SMARCA1	95	93.209	ENSFALG00000000209	SMARCA1	98	93.311	Ficedula_albicollis
ENSVVUG00000008878	SMARCA1	100	97.113	ENSFDAG00000009818	SMARCA1	97	96.967	Fukomys_damarensis
ENSVVUG00000008878	SMARCA1	98	84.984	ENSFHEG00000007687	smarca5	94	83.030	Fundulus_heteroclitus
ENSVVUG00000008878	SMARCA1	98	93.936	ENSGALG00000008431	SMARCA1	97	92.923	Gallus_gallus
ENSVVUG00000008878	SMARCA1	98	84.984	ENSGAFG00000017731	smarca5	95	83.030	Gambusia_affinis
ENSVVUG00000008878	SMARCA1	99	93.776	ENSGAGG00000023575	SMARCA1	100	93.621	Gopherus_agassizii
ENSVVUG00000008878	SMARCA1	74	96.000	ENSGGOG00000012841	-	96	96.000	Gorilla_gorilla
ENSVVUG00000008878	SMARCA1	99	97.074	ENSHGLG00000003080	SMARCA1	95	96.800	Heterocephalus_glaber_female
ENSVVUG00000008878	SMARCA1	100	95.773	ENSHGLG00100001102	SMARCA1	100	96.404	Heterocephalus_glaber_male
ENSVVUG00000008878	SMARCA1	98	84.878	ENSHCOG00000005458	smarca5	95	82.929	Hippocampus_comes
ENSVVUG00000008878	SMARCA1	99	87.983	ENSIPUG00000016905	Smarca1	99	86.925	Ictalurus_punctatus
ENSVVUG00000008878	SMARCA1	98	84.829	ENSIPUG00000005229	SMARCA5	97	82.759	Ictalurus_punctatus
ENSVVUG00000008878	SMARCA1	99	98.746	ENSSTOG00000014524	SMARCA1	95	98.400	Ictidomys_tridecemlineatus
ENSVVUG00000008878	SMARCA1	100	97.286	ENSJJAG00000002593	Smarca1	95	96.517	Jaculus_jaculus
ENSVVUG00000008878	SMARCA1	98	85.091	ENSKMAG00000003777	smarca5	95	83.131	Kryptolebias_marmoratus
ENSVVUG00000008878	SMARCA1	96	84.565	ENSLBEG00000013295	SMARCA1	100	85.082	Labrus_bergylta
ENSVVUG00000008878	SMARCA1	98	84.468	ENSLBEG00000018112	smarca5	95	82.727	Labrus_bergylta
ENSVVUG00000008878	SMARCA1	99	91.213	ENSLACG00000016697	SMARCA1	98	90.100	Latimeria_chalumnae
ENSVVUG00000008878	SMARCA1	98	90.957	ENSLOCG00000014591	smarca1	98	88.523	Lepisosteus_oculatus
ENSVVUG00000008878	SMARCA1	100	96.373	ENSLAFG00000000896	SMARCA1	100	96.620	Loxodonta_africana
ENSVVUG00000008878	SMARCA1	100	98.956	ENSMFAG00000002117	SMARCA1	97	98.774	Macaca_fascicularis
ENSVVUG00000008878	SMARCA1	100	98.956	ENSMMUG00000008818	SMARCA1	99	98.429	Macaca_mulatta
ENSVVUG00000008878	SMARCA1	100	98.956	ENSMNEG00000041768	SMARCA1	97	98.774	Macaca_nemestrina
ENSVVUG00000008878	SMARCA1	99	98.955	ENSMLEG00000043198	SMARCA1	95	98.900	Mandrillus_leucophaeus
ENSVVUG00000008878	SMARCA1	98	85.304	ENSMAMG00000014294	smarca5	96	82.700	Mastacembelus_armatus
ENSVVUG00000008878	SMARCA1	98	85.304	ENSMZEG00005009369	smarca5	95	83.367	Maylandia_zebra
ENSVVUG00000008878	SMARCA1	98	92.752	ENSMGAG00000007042	SMARCA1	99	91.304	Meleagris_gallopavo
ENSVVUG00000008878	SMARCA1	100	96.781	ENSMAUG00000008133	Smarca1	94	96.436	Mesocricetus_auratus
ENSVVUG00000008878	SMARCA1	99	99.269	ENSMICG00000015768	SMARCA1	95	99.100	Microcebus_murinus
ENSVVUG00000008878	SMARCA1	100	95.876	ENSMOCG00000009464	Smarca1	95	96.318	Microtus_ochrogaster
ENSVVUG00000008878	SMARCA1	98	83.174	ENSMMOG00000005547	smarca5	99	81.212	Mola_mola
ENSVVUG00000008878	SMARCA1	99	92.790	ENSMODG00000013187	-	96	91.600	Monodelphis_domestica
ENSVVUG00000008878	SMARCA1	98	84.665	ENSMALG00000002081	smarca5	97	83.025	Monopterus_albus
ENSVVUG00000008878	SMARCA1	100	96.885	MGP_CAROLIEiJ_G0033034	Smarca1	95	96.617	Mus_caroli
ENSVVUG00000008878	SMARCA1	100	96.885	ENSMUSG00000031099	Smarca1	95	96.716	Mus_musculus
ENSVVUG00000008878	SMARCA1	100	96.781	MGP_PahariEiJ_G0031579	Smarca1	95	96.517	Mus_pahari
ENSVVUG00000008878	SMARCA1	100	96.885	MGP_SPRETEiJ_G0034192	Smarca1	95	96.716	Mus_spretus
ENSVVUG00000008878	SMARCA1	99	98.419	ENSMPUG00000017423	SMARCA1	89	98.419	Mustela_putorius_furo
ENSVVUG00000008878	SMARCA1	99	96.087	ENSMLUG00000029614	SMARCA1	95	95.858	Myotis_lucifugus
ENSVVUG00000008878	SMARCA1	100	97.715	ENSNGAG00000006492	Smarca1	94	97.556	Nannospalax_galili
ENSVVUG00000008878	SMARCA1	98	85.410	ENSNBRG00000004463	smarca5	99	83.333	Neolamprologus_brichardi
ENSVVUG00000008878	SMARCA1	100	97.815	ENSNLEG00000015179	SMARCA1	98	97.857	Nomascus_leucogenys
ENSVVUG00000008878	SMARCA1	96	82.725	ENSMEUG00000008819	SMARCA1	100	82.143	Notamacropus_eugenii
ENSVVUG00000008878	SMARCA1	100	95.979	ENSODEG00000012163	SMARCA1	94	95.753	Octodon_degus
ENSVVUG00000008878	SMARCA1	98	85.410	ENSONIG00000009993	smarca5	95	83.468	Oreochromis_niloticus
ENSVVUG00000008878	SMARCA1	99	93.994	ENSOANG00000002862	SMARCA1	100	93.724	Ornithorhynchus_anatinus
ENSVVUG00000008878	SMARCA1	99	97.597	ENSOCUG00000001047	SMARCA1	95	97.100	Oryctolagus_cuniculus
ENSVVUG00000008878	SMARCA1	98	84.878	ENSORLG00000021998	smarca5	95	83.030	Oryzias_latipes
ENSVVUG00000008878	SMARCA1	98	84.984	ENSORLG00020017679	smarca5	95	83.131	Oryzias_latipes_hni
ENSVVUG00000008878	SMARCA1	98	84.878	ENSORLG00015017210	smarca5	95	82.929	Oryzias_latipes_hsok
ENSVVUG00000008878	SMARCA1	98	84.878	ENSOMEG00000000086	smarca5	95	82.929	Oryzias_melastigma
ENSVVUG00000008878	SMARCA1	100	97.629	ENSOGAG00000004399	SMARCA1	94	97.371	Otolemur_garnettii
ENSVVUG00000008878	SMARCA1	99	99.164	ENSOARG00000014638	SMARCA1	100	99.184	Ovis_aries
ENSVVUG00000008878	SMARCA1	99	99.060	ENSPPAG00000034647	SMARCA1	95	99.000	Pan_paniscus
ENSVVUG00000008878	SMARCA1	99	99.800	ENSPPRG00000008929	SMARCA1	95	99.800	Panthera_pardus
ENSVVUG00000008878	SMARCA1	99	97.640	ENSPTIG00000000915	SMARCA1	98	97.640	Panthera_tigris_altaica
ENSVVUG00000008878	SMARCA1	100	98.956	ENSPTRG00000049876	SMARCA1	94	98.976	Pan_troglodytes
ENSVVUG00000008878	SMARCA1	99	99.060	ENSPANG00000003871	SMARCA1	95	99.000	Papio_anubis
ENSVVUG00000008878	SMARCA1	97	88.185	ENSPKIG00000013411	smarca1	98	86.826	Paramormyrops_kingsleyae
ENSVVUG00000008878	SMARCA1	99	93.565	ENSPSIG00000010101	SMARCA1	100	93.313	Pelodiscus_sinensis
ENSVVUG00000008878	SMARCA1	100	97.300	ENSPEMG00000017503	Smarca1	94	97.149	Peromyscus_maniculatus_bairdii
ENSVVUG00000008878	SMARCA1	100	93.215	ENSPCIG00000015460	SMARCA1	98	92.300	Phascolarctos_cinereus
ENSVVUG00000008878	SMARCA1	98	85.091	ENSPFOG00000007649	smarca5	95	83.030	Poecilia_formosa
ENSVVUG00000008878	SMARCA1	98	85.091	ENSPLAG00000003363	smarca5	95	83.030	Poecilia_latipinna
ENSVVUG00000008878	SMARCA1	98	84.984	ENSPMEG00000019849	smarca5	95	82.929	Poecilia_mexicana
ENSVVUG00000008878	SMARCA1	98	84.984	ENSPREG00000023250	smarca5	95	82.929	Poecilia_reticulata
ENSVVUG00000008878	SMARCA1	99	96.096	ENSPPYG00000020703	SMARCA1	95	96.100	Pongo_abelii
ENSVVUG00000008878	SMARCA1	84	88.333	ENSPCOG00000020722	SMARCA1	94	93.833	Propithecus_coquereli
ENSVVUG00000008878	SMARCA1	94	96.272	ENSPVAG00000003805	SMARCA1	88	96.396	Pteropus_vampyrus
ENSVVUG00000008878	SMARCA1	61	85.319	ENSPNYG00000012299	smarca5	89	85.319	Pundamilia_nyererei
ENSVVUG00000008878	SMARCA1	99	97.492	ENSRNOG00000003762	Smarca1	95	97.200	Rattus_norvegicus
ENSVVUG00000008878	SMARCA1	99	98.955	ENSRROG00000034167	SMARCA1	95	98.900	Rhinopithecus_roxellana
ENSVVUG00000008878	SMARCA1	99	98.955	ENSSBOG00000020641	SMARCA1	100	98.980	Saimiri_boliviensis_boliviensis
ENSVVUG00000008878	SMARCA1	97	87.325	ENSSHAG00000013518	SMARCA1	99	86.536	Sarcophilus_harrisii
ENSVVUG00000008878	SMARCA1	98	85.075	ENSSFOG00015016794	smarca5	100	83.711	Scleropages_formosus
ENSVVUG00000008878	SMARCA1	98	89.926	ENSSFOG00015009043	smarca1	98	87.675	Scleropages_formosus
ENSVVUG00000008878	SMARCA1	98	84.239	ENSSMAG00000004801	smarca5	95	82.573	Scophthalmus_maximus
ENSVVUG00000008878	SMARCA1	98	84.771	ENSSDUG00000020690	smarca5	96	82.727	Seriola_dumerili
ENSVVUG00000008878	SMARCA1	98	84.771	ENSSLDG00000025190	smarca5	96	82.727	Seriola_lalandi_dorsalis
ENSVVUG00000008878	SMARCA1	85	97.163	ENSSARG00000000842	SMARCA1	83	97.163	Sorex_araneus
ENSVVUG00000008878	SMARCA1	100	92.589	ENSSPUG00000000590	SMARCA1	94	92.316	Sphenodon_punctatus
ENSVVUG00000008878	SMARCA1	98	85.165	ENSSPAG00000002894	smarca5	97	84.245	Stegastes_partitus
ENSVVUG00000008878	SMARCA1	100	99.269	ENSSSCG00000012649	SMARCA1	97	97.003	Sus_scrofa
ENSVVUG00000008878	SMARCA1	98	93.617	ENSTGUG00000003899	-	100	92.668	Taeniopygia_guttata
ENSVVUG00000008878	SMARCA1	98	84.952	ENSTRUG00000014094	smarca5	95	82.929	Takifugu_rubripes
ENSVVUG00000008878	SMARCA1	98	83.885	ENSTNIG00000017717	smarca5	94	81.919	Tetraodon_nigroviridis
ENSVVUG00000008878	SMARCA1	93	95.801	ENSTBEG00000014973	SMARCA1	99	90.091	Tupaia_belangeri
ENSVVUG00000008878	SMARCA1	100	94.639	ENSTTRG00000006168	SMARCA1	99	94.608	Tursiops_truncatus
ENSVVUG00000008878	SMARCA1	99	99.478	ENSUAMG00000020201	SMARCA1	95	99.300	Ursus_americanus
ENSVVUG00000008878	SMARCA1	99	94.781	ENSUMAG00000004073	SMARCA1	97	99.513	Ursus_maritimus
ENSVVUG00000008878	SMARCA1	80	99.353	ENSVPAG00000010492	-	79	99.675	Vicugna_pacos
ENSVVUG00000008878	SMARCA1	98	90.977	ENSXETG00000001526	smarca1	99	89.548	Xenopus_tropicalis
ENSVVUG00000008878	SMARCA1	98	84.878	ENSXCOG00000011170	smarca5	98	82.929	Xiphophorus_couchianus
ENSVVUG00000008878	SMARCA1	98	84.878	ENSXMAG00000009678	smarca5	98	84.809	Xiphophorus_maculatus